Wall clock time and date at job start Mon Mar 30 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99756 * 2 1 4 4 N 1.34773 * 120.00362 * 179.97438 * 2 1 3 5 5 C 1.47814 * 134.57981 * 4.89904 * 4 2 1 6 6 C 1.53950 * 86.15854 * 155.42310 * 5 4 2 7 7 C 1.47578 * 134.49685 * 184.85734 * 4 2 1 8 8 H 1.08995 * 113.77228 * 90.21538 * 7 4 2 9 9 C 1.53000 * 113.76681 * 318.92800 * 7 4 2 10 10 H 1.09003 * 109.47124 * 340.47388 * 9 7 4 11 11 C 1.50699 * 109.47278 * 220.46807 * 9 7 4 12 12 H 1.08000 * 119.99906 * 124.39386 * 11 9 7 13 13 C 1.37874 * 120.00039 * 304.39023 * 11 9 7 14 14 N 1.31517 * 120.00288 * 190.65181 * 13 11 9 15 15 Si 1.86800 * 119.99951 * 10.65478 * 13 11 9 16 16 H 1.48502 * 109.47448 * 84.75563 * 15 13 11 17 17 H 1.48498 * 109.47067 * 204.75683 * 15 13 11 18 18 H 1.48500 * 109.47057 * 324.75212 * 15 13 11 19 19 C 1.53008 * 109.46990 * 100.46737 * 9 7 4 20 20 C 1.53784 * 113.61397 * 171.07237 * 19 9 7 21 21 C 1.53780 * 87.07915 * 139.98221 * 20 19 9 22 22 C 1.53775 * 87.08281 * 334.56923 * 21 20 19 23 23 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47182 * 300.00668 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00684 * 1 2 3 26 26 H 1.09004 * 113.83156 * 41.10018 * 5 4 2 27 27 H 1.08992 * 113.77427 * 269.74537 * 5 4 2 28 28 H 1.08994 * 113.74304 * 269.16927 * 6 5 4 29 29 H 1.09003 * 113.83676 * 137.87388 * 6 5 4 30 30 H 0.96997 * 120.00450 * 180.02562 * 14 13 11 31 31 H 1.08999 * 112.90274 * 39.82194 * 19 9 7 32 32 H 1.09001 * 113.61339 * 254.53282 * 20 19 9 33 33 H 1.08995 * 113.61254 * 25.42834 * 20 19 9 34 34 H 1.09002 * 113.61387 * 89.11364 * 21 20 19 35 35 H 1.08993 * 113.61238 * 220.01468 * 21 20 19 36 36 H 1.09007 * 113.61409 * 270.88404 * 22 21 20 37 37 H 1.08994 * 113.69370 * 139.99721 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.7913 -2.5902 -0.0888 6 6 3.2093 -2.8370 -0.6352 7 6 3.6065 -1.5383 0.0898 8 1 3.9568 -1.6942 1.1101 9 6 4.5315 -0.6341 -0.7274 10 1 3.9497 -0.1085 -1.4846 11 6 5.5889 -1.4723 -1.3984 12 1 5.7170 -1.4240 -2.4697 13 6 6.3930 -2.3007 -0.6447 14 7 7.4456 -2.8700 -1.1903 15 14 5.9874 -2.6146 1.1516 16 1 4.9955 -3.7153 1.2501 17 1 7.2245 -2.9965 1.8789 18 1 5.4200 -1.3814 1.7537 19 6 5.1994 0.3834 0.1998 20 6 6.3115 1.1993 -0.4803 21 6 5.7799 2.4190 0.2908 22 6 4.4199 1.7025 0.3304 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.0011 -2.7858 -0.8136 27 1 1.6060 -3.0565 0.8788 28 1 3.2786 -2.7723 -1.7210 29 1 3.6880 -3.7291 -0.2312 30 1 8.0111 -3.4531 -0.6601 31 1 5.4956 -0.0454 1.1571 32 1 7.3167 0.8994 -0.1839 33 1 6.1946 1.2809 -1.5609 34 1 6.2348 2.5467 1.2731 35 1 5.7728 3.3374 -0.2961 36 1 3.7857 1.9218 -0.5286 37 1 3.8966 1.8082 1.2806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:38 Heat of formation + Delta-G solvation = 39.521151 kcal Electronic energy + Delta-G solvation = -18300.742967 eV Core-core repulsion = 15659.972864 eV Total energy + Delta-G solvation = -2640.770103 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96082 -37.70384 -37.02305 -32.96628 -30.89589 -29.75374 -27.91355 -24.92866 -24.34075 -23.83238 -21.37209 -20.67837 -19.48284 -17.64164 -16.81551 -16.08893 -15.47730 -15.17939 -14.40176 -14.22705 -13.79623 -13.62694 -13.01844 -12.56901 -12.43227 -12.07125 -11.97583 -11.64815 -11.37222 -11.25867 -11.04788 -11.00042 -10.67660 -10.32353 -10.12669 -9.66923 -9.60536 -9.21161 -8.82306 -8.78969 -8.58710 -8.32790 -7.87597 -6.09933 -4.04457 3.11787 3.19515 3.22955 3.33116 3.48533 4.37721 4.89418 5.13781 5.21295 5.31868 5.50061 5.61049 5.63132 5.72926 5.77016 5.80754 5.86651 5.93216 5.96396 6.13191 6.33847 6.44100 6.52396 6.55963 6.72870 6.90518 6.92399 7.00761 7.12570 7.17797 7.39894 7.46158 7.74121 7.80341 8.35833 8.55702 8.78944 8.96005 9.56606 11.03966 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.013646 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.621361 B = 2051.326833 C = 2945.522483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.518 3.482 3 O -0.534 6.534 4 N -0.637 5.637 5 C 0.088 3.912 6 C -0.130 4.130 7 C 0.121 3.879 8 H 0.077 0.923 9 C 0.034 3.966 10 H 0.050 0.950 11 C -0.498 4.498 12 H 0.072 0.928 13 C 0.083 3.917 14 N -0.895 5.895 15 Si 0.845 3.155 16 H -0.275 1.275 17 H -0.299 1.299 18 H -0.238 1.238 19 C -0.114 4.114 20 C -0.104 4.104 21 C -0.164 4.164 22 C -0.108 4.108 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.312 1.304 3.762 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.308 3.692 3 O -0.412 6.412 4 N -0.373 5.373 5 C -0.036 4.036 6 C -0.168 4.168 7 C 0.020 3.980 8 H 0.095 0.905 9 C 0.014 3.986 10 H 0.068 0.932 11 C -0.536 4.536 12 H 0.090 0.910 13 C -0.119 4.119 14 N -0.533 5.533 15 Si 0.677 3.323 16 H -0.202 1.202 17 H -0.227 1.227 18 H -0.164 1.164 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.201 4.201 22 C -0.145 4.145 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.945 1.929 3.781 11.740 hybrid contribution -0.157 -0.502 1.195 1.306 sum -11.102 1.427 4.976 12.250 Atomic orbital electron populations 1.21822 0.93235 1.03319 1.04277 1.20397 0.89452 0.82963 0.76404 1.90776 1.69624 1.30430 1.50388 1.50550 1.10223 1.04577 1.71929 1.23286 0.99363 0.80789 1.00112 1.23523 0.92636 0.97967 1.02691 1.23834 0.81160 0.93980 0.99017 0.90546 1.19210 0.93296 0.92742 0.93385 0.93158 1.20815 1.14650 1.22865 0.95317 0.90966 1.24919 0.94200 0.95731 0.97061 1.69923 1.14514 1.31960 1.36909 0.88055 0.77317 0.79454 0.87494 1.20179 1.22673 1.16430 1.23108 0.96365 0.94681 0.99087 1.22553 0.98002 0.94316 0.99312 1.23058 0.99932 0.97553 0.99580 1.22962 0.93613 0.96322 1.01634 0.91377 0.89541 0.89518 0.90690 0.90823 0.87986 0.90469 0.92760 0.90409 0.92938 0.90645 0.92058 0.93141 0.89216 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.34 36.01 0.37 -1.65 16 2 C 0.52 9.13 8.02 -10.99 -0.09 9.04 16 3 O -0.53 -11.16 11.89 5.55 0.07 -11.10 16 4 N -0.64 -11.46 3.46 -170.17 -0.59 -12.05 16 5 C 0.09 1.27 8.11 -2.84 -0.02 1.24 16 6 C -0.13 -2.40 6.23 -25.79 -0.16 -2.56 16 7 C 0.12 2.54 2.44 -66.86 -0.16 2.37 16 8 H 0.08 1.68 4.05 -51.93 -0.21 1.47 16 9 C 0.03 0.79 1.64 -91.77 -0.15 0.64 16 10 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 11 C -0.50 -13.22 7.33 -34.44 -0.25 -13.47 16 12 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 13 C 0.08 2.25 5.28 -17.82 -0.09 2.16 16 14 N -0.90 -26.28 13.96 55.43 0.77 -25.51 16 15 Si 0.85 20.08 22.42 -169.99 -3.81 16.27 16 16 H -0.28 -6.11 6.02 56.52 0.34 -5.77 16 17 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.24 -5.43 3.60 56.52 0.20 -5.23 16 19 C -0.11 -2.62 2.55 -89.80 -0.23 -2.85 16 20 C -0.10 -2.30 6.82 -25.92 -0.18 -2.48 16 21 C -0.16 -3.19 8.08 -25.92 -0.21 -3.40 16 22 C -0.11 -2.31 5.29 -25.92 -0.14 -2.44 16 23 H 0.07 0.69 7.34 -51.93 -0.38 0.31 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.96 7.78 -51.93 -0.40 1.55 16 29 H 0.08 1.44 6.33 -51.93 -0.33 1.12 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.08 1.86 4.57 -51.93 -0.24 1.62 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.71 8.08 -51.93 -0.42 1.29 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 2.02 6.00 -51.93 -0.31 1.71 16 37 H 0.04 0.93 7.70 -51.93 -0.40 0.53 16 LS Contribution 273.15 15.07 4.12 4.12 Total: -1.00 -29.97 273.15 -6.61 -36.58 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.85 Total: 5.10 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.31 Total: -13.40 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.18 Total: -37.56 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -3.81 Total: 16.27 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.97 -6.61 -36.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.101 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds