Wall clock time and date at job start Mon Mar 30 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21284 * 119.99756 * 2 1 4 4 N 1.34773 * 120.00362 * 179.97438 * 2 1 3 5 5 C 1.47814 * 134.57981 * 4.89904 * 4 2 1 6 6 C 1.53950 * 86.15854 * 155.42310 * 5 4 2 7 7 C 1.47578 * 134.49685 * 184.85734 * 4 2 1 8 8 H 1.08995 * 113.77228 * 90.21538 * 7 4 2 9 9 C 1.53000 * 113.76681 * 318.92800 * 7 4 2 10 10 H 1.09003 * 109.47124 * 340.47388 * 9 7 4 11 11 C 1.50699 * 109.47278 * 220.46807 * 9 7 4 12 12 H 1.08000 * 119.99906 * 124.39386 * 11 9 7 13 13 C 1.37874 * 120.00039 * 304.39023 * 11 9 7 14 14 N 1.31517 * 120.00288 * 190.65181 * 13 11 9 15 15 Si 1.86800 * 119.99951 * 10.65478 * 13 11 9 16 16 H 1.48502 * 109.47448 * 84.75563 * 15 13 11 17 17 H 1.48498 * 109.47067 * 204.75683 * 15 13 11 18 18 H 1.48500 * 109.47057 * 324.75212 * 15 13 11 19 19 C 1.53008 * 109.46990 * 100.46737 * 9 7 4 20 20 C 1.53784 * 113.61397 * 171.07237 * 19 9 7 21 21 C 1.53780 * 87.07915 * 139.98221 * 20 19 9 22 22 C 1.53775 * 87.08281 * 334.56923 * 21 20 19 23 23 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47182 * 300.00668 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00684 * 1 2 3 26 26 H 1.09004 * 113.83156 * 41.10018 * 5 4 2 27 27 H 1.08992 * 113.77427 * 269.74537 * 5 4 2 28 28 H 1.08994 * 113.74304 * 269.16927 * 6 5 4 29 29 H 1.09003 * 113.83676 * 137.87388 * 6 5 4 30 30 H 0.96997 * 120.00450 * 180.02562 * 14 13 11 31 31 H 1.08999 * 112.90274 * 39.82194 * 19 9 7 32 32 H 1.09001 * 113.61339 * 254.53282 * 20 19 9 33 33 H 1.08995 * 113.61254 * 25.42834 * 20 19 9 34 34 H 1.09002 * 113.61387 * 89.11364 * 21 20 19 35 35 H 1.08993 * 113.61238 * 220.01468 * 21 20 19 36 36 H 1.09007 * 113.61409 * 270.88404 * 22 21 20 37 37 H 1.08994 * 113.69370 * 139.99721 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.7913 -2.5902 -0.0888 6 6 3.2093 -2.8370 -0.6352 7 6 3.6065 -1.5383 0.0898 8 1 3.9568 -1.6942 1.1101 9 6 4.5315 -0.6341 -0.7274 10 1 3.9497 -0.1085 -1.4846 11 6 5.5889 -1.4723 -1.3984 12 1 5.7170 -1.4240 -2.4697 13 6 6.3930 -2.3007 -0.6447 14 7 7.4456 -2.8700 -1.1903 15 14 5.9874 -2.6146 1.1516 16 1 4.9955 -3.7153 1.2501 17 1 7.2245 -2.9965 1.8789 18 1 5.4200 -1.3814 1.7537 19 6 5.1994 0.3834 0.1998 20 6 6.3115 1.1993 -0.4803 21 6 5.7799 2.4190 0.2908 22 6 4.4199 1.7025 0.3304 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.0011 -2.7858 -0.8136 27 1 1.6060 -3.0565 0.8788 28 1 3.2786 -2.7723 -1.7210 29 1 3.6880 -3.7291 -0.2312 30 1 8.0111 -3.4531 -0.6601 31 1 5.4956 -0.0454 1.1571 32 1 7.3167 0.8994 -0.1839 33 1 6.1946 1.2809 -1.5609 34 1 6.2348 2.5467 1.2731 35 1 5.7728 3.3374 -0.2961 36 1 3.7857 1.9218 -0.5286 37 1 3.8966 1.8082 1.2806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260711184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:38 Heat of formation + Delta-G solvation = 19.564882 kcal Electronic energy + Delta-G solvation = -18301.608336 eV Core-core repulsion = 15659.972864 eV Total energy + Delta-G solvation = -2641.635472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.44845 -39.37875 -38.48279 -34.96818 -32.54539 -31.26707 -29.13584 -26.73369 -25.87143 -25.74016 -22.81298 -22.49290 -21.11367 -19.21750 -18.38447 -17.94466 -16.91492 -16.73205 -16.01374 -15.90732 -15.46468 -15.15422 -14.92836 -13.92285 -13.71154 -13.50584 -13.26551 -13.22565 -12.94159 -12.84507 -12.71330 -12.60947 -12.56845 -12.11205 -11.82788 -11.45860 -11.41669 -10.91196 -10.70612 -10.52770 -10.38987 -10.11593 -9.38037 -8.25027 -6.23879 1.28223 1.32916 1.41229 1.84809 2.10199 2.36476 3.11078 3.71604 3.77617 3.96711 4.01111 4.13428 4.20470 4.27625 4.37759 4.45550 4.56356 4.60619 4.72246 4.73729 4.83382 4.90668 4.98367 5.09501 5.09931 5.15126 5.21956 5.29771 5.34375 5.36454 5.59114 5.67706 5.78794 5.93203 6.37713 6.75108 7.04490 7.40960 7.44213 8.92405 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.013646 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.621361 B = 2051.326833 C = 2945.522483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.504 3.496 3 O -0.576 6.576 4 N -0.642 5.642 5 C 0.109 3.891 6 C -0.137 4.137 7 C 0.107 3.893 8 H 0.074 0.926 9 C 0.043 3.957 10 H 0.027 0.973 11 C -0.493 4.493 12 H 0.025 0.975 13 C 0.039 3.961 14 N -0.944 5.944 15 Si 0.899 3.101 16 H -0.244 1.244 17 H -0.312 1.312 18 H -0.224 1.224 19 C -0.124 4.124 20 C -0.112 4.112 21 C -0.145 4.145 22 C -0.093 4.093 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.088 1.207 5.771 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.296 3.704 3 O -0.457 6.457 4 N -0.378 5.378 5 C -0.013 4.013 6 C -0.175 4.175 7 C 0.004 3.996 8 H 0.091 0.909 9 C 0.023 3.977 10 H 0.046 0.954 11 C -0.531 4.531 12 H 0.043 0.957 13 C -0.158 4.158 14 N -0.584 5.584 15 Si 0.728 3.272 16 H -0.168 1.168 17 H -0.240 1.240 18 H -0.149 1.149 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.182 4.182 22 C -0.130 4.130 23 H 0.114 0.886 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.779 1.821 5.781 15.054 hybrid contribution 0.735 -0.427 0.433 0.954 sum -13.044 1.395 6.215 14.516 Atomic orbital electron populations 1.21791 0.88301 1.05575 1.05515 1.21480 0.91728 0.82050 0.75109 1.90749 1.71018 1.31880 1.52071 1.50606 1.08778 1.06482 1.71943 1.23427 0.97496 0.78050 1.02288 1.23460 0.96073 0.96466 1.01493 1.23580 0.82828 0.94817 0.98372 0.90876 1.18977 0.92716 0.92648 0.93317 0.95427 1.20809 1.15761 1.23276 0.93268 0.95696 1.25537 0.93628 0.95246 1.01426 1.70068 1.16049 1.33393 1.38909 0.87171 0.77285 0.80825 0.81962 1.16841 1.24034 1.14943 1.23149 0.97058 0.95391 0.98592 1.22531 0.97396 0.96393 0.98683 1.22992 0.97925 0.97001 1.00264 1.22734 0.93979 0.95325 1.00962 0.88623 0.88006 0.88421 0.87013 0.87767 0.89865 0.90760 0.92812 0.90832 0.93947 0.92315 0.90117 0.91160 0.90625 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 10.34 71.24 0.74 -2.29 16 2 C 0.50 16.49 8.02 87.66 0.70 17.20 16 3 O -0.58 -23.47 11.89 -3.04 -0.04 -23.51 16 4 N -0.64 -21.41 3.46 -810.67 -2.81 -24.21 16 5 C 0.11 2.66 8.11 86.44 0.70 3.37 16 6 C -0.14 -4.82 6.23 31.25 0.19 -4.62 16 7 C 0.11 4.33 2.44 45.09 0.11 4.44 16 8 H 0.07 3.04 4.05 -2.39 -0.01 3.03 16 9 C 0.04 2.07 1.64 -11.54 -0.02 2.05 16 10 H 0.03 1.41 7.37 -2.39 -0.02 1.39 16 11 C -0.49 -27.36 7.33 25.60 0.19 -27.17 16 12 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16 13 C 0.04 2.20 5.28 84.65 0.45 2.65 16 14 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 15 Si 0.90 41.36 22.42 68.60 1.54 42.89 16 16 H -0.24 -9.94 6.02 99.48 0.60 -9.34 16 17 H -0.31 -14.97 7.11 99.48 0.71 -14.27 16 18 H -0.22 -9.73 3.60 99.48 0.36 -9.37 16 19 C -0.12 -5.67 2.55 -10.27 -0.03 -5.70 16 20 C -0.11 -5.04 6.82 31.12 0.21 -4.83 16 21 C -0.14 -5.42 8.08 31.12 0.25 -5.17 16 22 C -0.09 -3.89 5.29 31.12 0.16 -3.72 16 23 H 0.09 1.38 7.34 -2.39 -0.02 1.36 16 24 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.11 1.98 8.11 -2.38 -0.02 1.96 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.08 3.20 7.78 -2.39 -0.02 3.18 16 29 H 0.07 2.62 6.33 -2.39 -0.02 2.61 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.07 3.45 4.57 -2.39 -0.01 3.44 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 2.78 8.08 -2.39 -0.02 2.76 16 34 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 3.42 6.00 -2.38 -0.01 3.40 16 37 H 0.04 1.81 7.70 -2.39 -0.02 1.79 16 Total: -1.00 -68.73 273.15 3.25 -65.48 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.59 Total: 20.37 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.66 Total: -23.80 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.51 Total: -81.43 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.04 Total: -23.51 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.54 Total: 42.89 kcal Total: -68.73 3.25 -65.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.046 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds