Wall clock time and date at job start Mon Mar 30 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21284 * 119.99850 * 2 1 4 4 N 1.34773 * 120.00207 * 180.02562 * 2 1 3 5 5 C 1.47064 * 136.05667 * 4.99076 * 4 2 1 6 6 C 1.53502 * 87.98762 * 207.09027 * 5 4 2 7 7 C 1.47072 * 136.05722 * 184.95096 * 4 2 1 8 8 H 1.08997 * 113.46278 * 267.74335 * 7 4 2 9 9 C 1.52995 * 113.46751 * 38.13016 * 7 4 2 10 10 H 1.09001 * 109.47106 * 161.88992 * 9 7 4 11 11 C 1.50694 * 109.47495 * 41.88950 * 9 7 4 12 12 H 1.08006 * 120.00102 * 304.93159 * 11 9 7 13 13 C 1.37879 * 120.00278 * 124.93391 * 11 9 7 14 14 N 1.31513 * 119.99923 * 354.96367 * 13 11 9 15 15 Si 1.86796 * 120.00206 * 174.96665 * 13 11 9 16 16 H 1.48499 * 109.46937 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47527 * 119.99959 * 15 13 11 18 18 H 1.48500 * 109.47143 * 240.00028 * 15 13 11 19 19 C 1.53003 * 109.46901 * 281.88507 * 9 7 4 20 20 C 1.53778 * 113.61185 * 173.91650 * 19 9 7 21 21 C 1.53786 * 87.08244 * 139.98151 * 20 19 9 22 22 C 1.53776 * 113.61545 * 271.41459 * 19 9 7 23 23 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47778 * 299.99757 * 1 2 3 25 25 H 1.09001 * 109.47555 * 59.99948 * 1 2 3 26 26 H 1.09000 * 113.46808 * 321.87033 * 5 4 2 27 27 H 1.08999 * 113.46902 * 92.25436 * 5 4 2 28 28 H 1.09000 * 114.21005 * 220.34554 * 6 5 4 29 29 H 1.08997 * 114.20670 * 87.51973 * 6 5 4 30 30 H 0.96991 * 120.00186 * 180.02562 * 14 13 11 31 31 H 1.08994 * 112.90631 * 42.67046 * 19 9 7 32 32 H 1.08999 * 113.61660 * 25.43761 * 20 19 9 33 33 H 1.09001 * 113.61788 * 254.52806 * 20 19 9 34 34 H 1.09007 * 113.61094 * 89.11410 * 21 20 19 35 35 H 1.08994 * 113.61873 * 220.01635 * 21 20 19 36 36 H 1.09001 * 113.61235 * 105.47474 * 22 19 9 37 37 H 1.08997 * 113.69378 * 334.57826 * 22 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 1.8299 -2.5925 -0.0899 6 6 3.1124 -2.9019 0.6947 7 6 3.5909 -1.5758 0.0874 8 1 4.0708 -1.6906 -0.8845 9 6 4.4130 -0.7236 1.0561 10 1 5.3284 -1.2535 1.3193 11 6 3.6078 -0.4621 2.3028 12 1 2.6274 -0.0153 2.2287 13 6 4.1228 -0.7933 3.5382 14 7 5.2721 -1.4268 3.6232 15 14 3.1880 -0.3422 5.0913 16 1 1.9322 0.3614 4.7264 17 1 2.8619 -1.5770 5.8491 18 1 4.0270 0.5481 5.9331 19 6 4.7678 0.6072 0.3897 20 6 5.4687 1.6003 1.3317 21 6 6.3738 1.9671 0.1437 22 6 6.0790 0.5641 -0.4126 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3635 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.9183 -2.8497 0.4495 27 1 1.8396 -2.9788 -1.1091 28 1 3.6541 -3.7780 0.3382 29 1 2.9903 -2.8792 1.7776 30 1 5.6342 -1.6601 4.4922 31 1 3.9334 1.0419 -0.1605 32 1 6.0002 1.1213 2.1539 33 1 4.8269 2.4177 1.6603 34 1 5.9783 2.7736 -0.4738 35 1 7.4175 2.1169 0.4199 36 1 5.9298 0.5450 -1.4922 37 1 6.7783 -0.1979 -0.0684 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:46 Heat of formation + Delta-G solvation = 20.686041 kcal Electronic energy + Delta-G solvation = -18191.073088 eV Core-core repulsion = 15549.486234 eV Total energy + Delta-G solvation = -2641.586855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80522 -37.42760 -36.84948 -32.77046 -30.57384 -29.16821 -27.69678 -24.99465 -24.02101 -23.96866 -21.32839 -20.44737 -18.27530 -17.82415 -16.39719 -15.93474 -15.14944 -14.84917 -14.45995 -14.10534 -13.75703 -13.33602 -12.56434 -12.41894 -11.94162 -11.88655 -11.79689 -11.52059 -11.30824 -11.20798 -10.86000 -10.77947 -10.53331 -10.44068 -10.34754 -9.62391 -9.48802 -8.99229 -8.78107 -8.55688 -8.35503 -8.22179 -7.72348 -5.91128 -3.86548 3.32657 3.42341 3.45633 3.47675 3.69428 4.52509 5.16540 5.25380 5.38524 5.52218 5.66644 5.73560 5.80335 5.82511 5.85748 5.92464 6.03285 6.14157 6.18191 6.29809 6.47608 6.48343 6.60075 6.71015 6.85090 6.90425 7.13882 7.25046 7.28869 7.52872 7.64672 7.79883 8.02367 8.10378 8.59555 8.71289 9.09182 9.25316 9.72793 11.18398 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.013828 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.166163 B = 2024.415528 C = 2755.831869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.537 3.463 3 O -0.535 6.535 4 N -0.622 5.622 5 C 0.094 3.906 6 C -0.137 4.137 7 C 0.137 3.863 8 H 0.059 0.941 9 C 0.037 3.963 10 H 0.076 0.924 11 C -0.469 4.469 12 H 0.052 0.948 13 C 0.062 3.938 14 N -0.899 5.899 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.286 1.286 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.150 4.150 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.257 0.743 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 -2.579 -7.240 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.327 3.673 3 O -0.413 6.413 4 N -0.357 5.357 5 C -0.030 4.030 6 C -0.174 4.174 7 C 0.035 3.965 8 H 0.077 0.923 9 C 0.018 3.982 10 H 0.094 0.906 11 C -0.508 4.508 12 H 0.070 0.930 13 C -0.137 4.137 14 N -0.539 5.539 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.212 1.212 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.187 4.187 22 C -0.184 4.184 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.968 -1.872 -7.099 8.864 hybrid contribution -0.523 0.197 0.961 1.112 sum -5.490 -1.675 -6.138 8.404 Atomic orbital electron populations 1.21775 0.93384 1.03215 1.04100 1.19912 0.89084 0.82276 0.76030 1.90547 1.69264 1.30565 1.50948 1.49582 1.10548 1.04253 1.71319 1.22924 0.99548 0.81288 0.99238 1.23366 0.94918 0.96750 1.02408 1.22952 0.83031 0.93008 0.97503 0.92288 1.19161 0.96625 0.90801 0.91637 0.90569 1.20912 1.02130 1.37857 0.89888 0.93009 1.24892 0.95028 0.95222 0.98604 1.69891 1.19090 1.41102 1.23843 0.86764 0.80275 0.78045 0.84280 1.20057 1.21434 1.21236 1.23187 0.95037 0.98502 0.95787 1.22568 0.97247 0.98641 0.96085 1.22842 0.98799 0.97065 0.99998 1.23057 1.00790 0.96539 0.97981 0.91424 0.89447 0.89874 0.91658 0.91283 0.91498 0.87203 0.93355 0.87360 0.90260 0.93679 0.91886 0.93350 0.93984 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.36 36.00 0.37 -2.02 16 2 C 0.54 10.65 6.65 -10.99 -0.07 10.58 16 3 O -0.54 -12.68 13.44 5.55 0.07 -12.61 16 4 N -0.62 -11.81 3.01 -177.42 -0.53 -12.34 16 5 C 0.09 1.39 8.04 -8.50 -0.07 1.33 16 6 C -0.14 -2.42 7.82 -26.21 -0.20 -2.62 16 7 C 0.14 2.78 3.82 -72.39 -0.28 2.50 16 8 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 9 C 0.04 0.88 1.94 -91.78 -0.18 0.70 16 10 H 0.08 2.02 6.61 -51.93 -0.34 1.68 16 11 C -0.47 -12.34 5.59 -34.44 -0.19 -12.53 16 12 H 0.05 1.45 6.01 -52.48 -0.32 1.14 16 13 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 14 N -0.90 -25.06 12.62 55.43 0.70 -24.36 16 15 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 C -0.11 -2.48 2.77 -89.81 -0.25 -2.73 16 20 C -0.11 -2.52 6.91 -25.92 -0.18 -2.70 16 21 C -0.15 -2.97 8.08 -25.91 -0.21 -3.18 16 22 C -0.15 -2.98 7.63 -25.92 -0.20 -3.18 16 23 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.86 7.83 -51.93 -0.41 0.46 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.11 2.30 7.20 -51.93 -0.37 1.92 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.11 2.70 4.57 -51.93 -0.24 2.46 16 32 H 0.08 2.02 8.10 -51.93 -0.42 1.60 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.43 7.89 -51.93 -0.41 1.02 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -29.86 292.02 -7.76 -37.62 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.82 Total: 3.02 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.55 Total: -12.27 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.16 Total: -36.70 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.86 -7.76 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.306 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds