Wall clock time and date at job start Mon Mar 30 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47557 * 2 1 4 4 C 1.50706 * 109.47197 * 120.00221 * 2 1 3 5 5 H 1.07999 * 120.00463 * 119.99886 * 4 2 1 6 6 C 1.37888 * 119.99467 * 300.00028 * 4 2 1 7 7 N 1.31506 * 120.00184 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99742 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47010 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46892 * 119.99855 * 8 6 4 11 11 H 1.48490 * 109.47104 * 239.99984 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99890 * 2 1 3 13 13 C 1.45753 * 117.94641 * 119.98192 * 12 2 1 14 14 C 1.52906 * 110.49482 * 199.06015 * 13 12 2 15 15 C 1.53349 * 108.68557 * 309.27421 * 14 13 12 16 16 H 1.08993 * 109.70523 * 307.76568 * 15 14 13 17 17 C 1.53006 * 109.67088 * 187.25220 * 15 14 13 18 18 C 1.53000 * 117.49776 * 61.03431 * 17 15 14 19 19 C 1.52997 * 117.49537 * 129.65885 * 17 15 14 20 20 C 1.53065 * 108.42292 * 67.52189 * 15 14 13 21 21 C 1.33353 * 117.94585 * 299.99733 * 12 2 1 22 22 O 1.21278 * 118.25004 * 357.80184 * 21 12 2 23 23 H 1.08999 * 109.47034 * 60.00320 * 1 2 3 24 24 H 1.09001 * 109.46880 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47237 * 299.99818 * 1 2 3 26 26 H 0.96998 * 120.00205 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.30225 * 319.38601 * 13 12 2 28 28 H 1.08995 * 109.30263 * 78.96877 * 13 12 2 29 29 H 1.08999 * 109.60742 * 189.50478 * 14 13 12 30 30 H 1.08996 * 109.58553 * 69.03093 * 14 13 12 31 31 H 1.09002 * 115.56020 * 275.34014 * 17 15 14 32 32 H 1.08990 * 117.49990 * 359.97438 * 18 17 15 33 33 H 1.09004 * 117.49237 * 214.97568 * 18 17 15 34 34 H 1.08999 * 117.49685 * 145.02116 * 19 17 15 35 35 H 1.08997 * 117.50044 * 359.97438 * 19 17 15 36 36 H 1.08994 * 109.40692 * 71.22992 * 20 15 14 37 37 H 1.09001 * 109.40042 * 191.05717 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0081 9 1 3.1453 -2.2877 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1961 13 6 2.8526 0.0605 -2.1257 14 6 2.8769 -0.6213 -3.4942 15 6 3.2232 -2.1024 -3.2992 16 1 4.1324 -2.1920 -2.7048 17 6 3.4311 -2.7665 -4.6618 18 6 4.5557 -2.2255 -5.5471 19 6 4.7084 -3.5847 -4.8613 20 6 2.0608 -2.7788 -2.5682 21 6 1.6714 -1.9669 -1.3663 22 8 1.0053 -2.5005 -0.5046 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7094 1.1618 3.4844 27 1 2.4545 1.0695 -2.2328 28 1 3.8689 0.1138 -1.7354 29 1 3.6305 -0.1494 -4.1246 30 1 1.8971 -0.5335 -3.9635 31 1 2.5258 -3.1180 -5.1567 32 1 5.1470 -1.3963 -5.1590 33 1 4.3901 -2.2212 -6.6245 34 1 4.6435 -4.4745 -5.4875 35 1 5.4008 -3.6496 -4.0220 36 1 1.2079 -2.8605 -3.2419 37 1 2.3655 -3.7750 -2.2474 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:13 Heat of formation + Delta-G solvation = -16.391171 kcal Electronic energy + Delta-G solvation = -17538.864685 eV Core-core repulsion = 14895.670042 eV Total energy + Delta-G solvation = -2643.194643 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85058 -37.74490 -35.20221 -34.04542 -31.94445 -29.38593 -28.45964 -25.04778 -24.35003 -23.15180 -22.22601 -20.85774 -19.95228 -17.95092 -16.50262 -15.94097 -15.47609 -14.94295 -14.70526 -14.34786 -13.87060 -13.78279 -13.19758 -12.61507 -12.36401 -12.27669 -11.65844 -11.48515 -11.35135 -11.13742 -11.03329 -10.83297 -10.72756 -10.58849 -10.35679 -10.31656 -10.16736 -9.89054 -9.83048 -9.06872 -8.48711 -8.14078 -7.45488 -5.91026 -3.92359 3.37466 3.44911 3.50946 3.65743 3.73897 4.11140 4.52053 4.56578 4.81405 4.82124 5.00649 5.20118 5.25219 5.39343 5.42170 5.51012 5.54736 5.75871 5.78971 5.85236 6.00789 6.02944 6.10815 6.12630 6.19399 6.22615 6.49407 6.87579 7.08767 7.26203 7.33241 7.84495 7.97291 8.19871 8.33866 8.77217 9.06005 9.34990 9.70930 11.15184 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.006528 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.187357 B = 4288.472139 C = 4486.095378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.265 3.735 3 H 0.040 0.960 4 C -0.490 4.490 5 H 0.057 0.943 6 C 0.057 3.943 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.593 5.593 13 C 0.116 3.884 14 C -0.126 4.126 15 C -0.059 4.059 16 H 0.077 0.923 17 C -0.143 4.143 18 C -0.180 4.180 19 C -0.182 4.182 20 C -0.127 4.127 21 C 0.504 3.496 22 O -0.532 6.532 23 H 0.001 0.999 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.259 0.741 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 -3.227 -15.336 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.058 0.942 4 C -0.529 4.529 5 H 0.075 0.925 6 C -0.143 4.143 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.326 5.326 13 C -0.008 4.008 14 C -0.164 4.164 15 C -0.078 4.078 16 H 0.095 0.905 17 C -0.161 4.161 18 C -0.217 4.217 19 C -0.219 4.219 20 C -0.167 4.167 21 C 0.290 3.710 22 O -0.410 6.410 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.582 -3.395 -14.746 16.128 hybrid contribution 0.360 -0.390 0.738 0.909 sum 5.942 -3.785 -14.008 15.680 Atomic orbital electron populations 1.22131 0.98089 1.01396 0.99681 1.18858 0.91604 0.91986 0.81085 0.94208 1.21280 1.30030 1.11627 0.89936 0.92460 1.24846 0.95428 0.95171 0.98850 1.69879 1.37594 1.23317 1.23213 0.86440 0.78515 0.79540 0.82898 1.19969 1.21288 1.21075 1.47713 1.49705 1.11005 1.24174 1.21242 0.95389 0.95534 0.88664 1.21908 1.02427 0.94987 0.97034 1.20844 0.98853 0.94458 0.93605 0.90471 1.22360 0.93231 1.03366 0.97188 1.22927 1.02933 0.97512 0.98365 1.23012 1.00616 0.94851 1.03372 1.21726 0.98695 0.99956 0.96350 1.19681 0.81364 0.82299 0.87623 1.90700 1.39039 1.68813 1.42416 0.97990 0.92716 0.89344 0.93143 0.91387 0.92575 0.90547 0.91318 0.87826 0.88702 0.89094 0.89103 0.88772 0.89451 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.86 37.16 0.33 -3.72 16 2 C 0.26 6.88 2.60 -69.08 -0.18 6.70 16 3 H 0.04 1.07 7.79 -51.93 -0.40 0.66 16 4 C -0.49 -14.20 7.36 -34.43 -0.25 -14.46 16 5 H 0.06 1.73 7.33 -52.49 -0.38 1.35 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -26.42 11.32 55.43 0.63 -25.79 16 8 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 16 9 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 12 N -0.59 -12.74 2.78 -168.71 -0.47 -13.21 16 13 C 0.12 1.88 6.25 -4.49 -0.03 1.85 16 14 C -0.13 -1.57 5.26 -26.60 -0.14 -1.71 16 15 C -0.06 -0.75 2.41 -90.40 -0.22 -0.97 16 16 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 17 C -0.14 -1.47 5.15 -90.62 -0.47 -1.94 16 18 C -0.18 -1.60 9.67 -26.73 -0.26 -1.86 16 19 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 20 C -0.13 -1.99 5.35 -28.10 -0.15 -2.14 16 21 C 0.50 10.91 6.74 -11.87 -0.08 10.83 16 22 O -0.53 -14.11 13.38 5.56 0.07 -14.03 16 23 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 24 H 0.05 1.52 6.00 -51.93 -0.31 1.20 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.78 7.18 -51.93 -0.37 0.40 16 30 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 31 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 32 H 0.09 0.83 7.67 -51.93 -0.40 0.43 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.09 1.23 8.03 -51.93 -0.42 0.82 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 292.70 15.07 4.41 4.41 Total: -1.00 -32.29 292.70 -8.13 -40.41 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.94 Total: -1.65 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.81 Total: -7.83 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.16 Total: -39.00 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.29 -8.13 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.021 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds