Wall clock time and date at job start Mon Mar 30 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47557 * 2 1 4 4 C 1.50706 * 109.47197 * 120.00221 * 2 1 3 5 5 H 1.07999 * 120.00463 * 119.99886 * 4 2 1 6 6 C 1.37888 * 119.99467 * 300.00028 * 4 2 1 7 7 N 1.31506 * 120.00184 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99742 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47010 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46892 * 119.99855 * 8 6 4 11 11 H 1.48490 * 109.47104 * 239.99984 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99890 * 2 1 3 13 13 C 1.45753 * 117.94641 * 119.98192 * 12 2 1 14 14 C 1.52906 * 110.49482 * 199.06015 * 13 12 2 15 15 C 1.53349 * 108.68557 * 309.27421 * 14 13 12 16 16 H 1.08993 * 109.70523 * 307.76568 * 15 14 13 17 17 C 1.53006 * 109.67088 * 187.25220 * 15 14 13 18 18 C 1.53000 * 117.49776 * 61.03431 * 17 15 14 19 19 C 1.52997 * 117.49537 * 129.65885 * 17 15 14 20 20 C 1.53065 * 108.42292 * 67.52189 * 15 14 13 21 21 C 1.33353 * 117.94585 * 299.99733 * 12 2 1 22 22 O 1.21278 * 118.25004 * 357.80184 * 21 12 2 23 23 H 1.08999 * 109.47034 * 60.00320 * 1 2 3 24 24 H 1.09001 * 109.46880 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47237 * 299.99818 * 1 2 3 26 26 H 0.96998 * 120.00205 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.30225 * 319.38601 * 13 12 2 28 28 H 1.08995 * 109.30263 * 78.96877 * 13 12 2 29 29 H 1.08999 * 109.60742 * 189.50478 * 14 13 12 30 30 H 1.08996 * 109.58553 * 69.03093 * 14 13 12 31 31 H 1.09002 * 115.56020 * 275.34014 * 17 15 14 32 32 H 1.08990 * 117.49990 * 359.97438 * 18 17 15 33 33 H 1.09004 * 117.49237 * 214.97568 * 18 17 15 34 34 H 1.08999 * 117.49685 * 145.02116 * 19 17 15 35 35 H 1.08997 * 117.50044 * 359.97438 * 19 17 15 36 36 H 1.08994 * 109.40692 * 71.22992 * 20 15 14 37 37 H 1.09001 * 109.40042 * 191.05717 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0081 9 1 3.1453 -2.2877 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1961 13 6 2.8526 0.0605 -2.1257 14 6 2.8769 -0.6213 -3.4942 15 6 3.2232 -2.1024 -3.2992 16 1 4.1324 -2.1920 -2.7048 17 6 3.4311 -2.7665 -4.6618 18 6 4.5557 -2.2255 -5.5471 19 6 4.7084 -3.5847 -4.8613 20 6 2.0608 -2.7788 -2.5682 21 6 1.6714 -1.9669 -1.3663 22 8 1.0053 -2.5005 -0.5046 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7094 1.1618 3.4844 27 1 2.4545 1.0695 -2.2328 28 1 3.8689 0.1138 -1.7354 29 1 3.6305 -0.1494 -4.1246 30 1 1.8971 -0.5335 -3.9635 31 1 2.5258 -3.1180 -5.1567 32 1 5.1470 -1.3963 -5.1590 33 1 4.3901 -2.2212 -6.6245 34 1 4.6435 -4.4745 -5.4875 35 1 5.4008 -3.6496 -4.0220 36 1 1.2079 -2.8605 -3.2419 37 1 2.3655 -3.7750 -2.2474 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:13 Heat of formation + Delta-G solvation = -35.670671 kcal Electronic energy + Delta-G solvation = -17539.700707 eV Core-core repulsion = 14895.670042 eV Total energy + Delta-G solvation = -2644.030665 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37292 -38.81317 -36.87129 -35.69868 -33.72199 -30.95586 -30.13565 -27.26906 -25.63056 -24.47357 -23.08469 -22.46863 -20.93305 -19.52222 -18.45819 -17.52213 -16.90145 -16.43674 -16.19270 -15.84483 -15.26371 -15.14243 -14.54050 -14.32354 -14.10968 -13.64712 -13.28907 -13.06111 -12.77973 -12.72809 -12.50748 -12.32914 -12.24317 -12.15516 -12.03377 -11.88453 -11.67043 -11.20820 -11.05972 -10.66230 -10.57524 -10.04736 -9.26248 -8.11997 -6.20565 1.34077 1.37390 1.48480 2.01737 2.37788 2.54978 2.98746 3.15189 3.59847 3.81126 3.93674 3.98338 4.19784 4.33500 4.35563 4.48346 4.64081 4.72597 4.77463 4.82869 4.89811 4.90429 4.99956 5.01405 5.10349 5.16427 5.17678 5.30214 5.35088 5.38567 5.51272 5.63503 5.86895 6.08214 6.22990 6.78304 7.05277 7.40980 7.70105 8.92390 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.006528 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.187357 B = 4288.472139 C = 4486.095378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.266 3.734 3 H 0.030 0.970 4 C -0.505 4.505 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.269 1.269 11 H -0.282 1.282 12 N -0.596 5.596 13 C 0.106 3.894 14 C -0.114 4.114 15 C -0.051 4.051 16 H 0.067 0.933 17 C -0.149 4.149 18 C -0.168 4.168 19 C -0.185 4.185 20 C -0.115 4.115 21 C 0.492 3.508 22 O -0.593 6.593 23 H 0.024 0.976 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.262 0.738 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -3.323 -17.366 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.048 0.952 4 C -0.544 4.544 5 H 0.053 0.947 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.208 1.208 12 N -0.327 5.327 13 C -0.017 4.017 14 C -0.151 4.151 15 C -0.070 4.070 16 H 0.086 0.914 17 C -0.168 4.168 18 C -0.204 4.204 19 C -0.222 4.222 20 C -0.155 4.155 21 C 0.281 3.719 22 O -0.474 6.474 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.781 -3.467 -16.817 18.461 hybrid contribution 0.003 -0.341 1.362 1.404 sum 6.784 -3.808 -15.455 17.303 Atomic orbital electron populations 1.21916 0.98517 0.99850 0.99577 1.18560 0.91291 0.91489 0.82318 0.95228 1.21413 1.30187 1.11091 0.91746 0.94726 1.25562 0.95691 0.95942 1.01462 1.69965 1.37993 1.24044 1.23979 0.85559 0.78082 0.78521 0.79729 1.20549 1.19472 1.20831 1.47724 1.49906 1.11392 1.23702 1.21577 0.94437 0.95887 0.89777 1.21884 1.03957 0.94496 0.94773 1.20753 0.96901 0.94615 0.94727 0.91424 1.22212 0.94225 1.04354 0.95961 1.23021 1.01290 0.97124 0.99000 1.23086 0.99780 0.95828 1.03548 1.21662 1.00755 0.98916 0.94123 1.20764 0.80135 0.82299 0.88694 1.90664 1.41713 1.70025 1.45014 0.95669 0.94816 0.91727 0.92828 0.90602 0.92376 0.87229 0.90662 0.86915 0.88338 0.87517 0.87988 0.89416 0.87411 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.52 8.86 71.98 0.64 -6.88 16 2 C 0.27 14.10 2.60 44.25 0.11 14.21 16 3 H 0.03 1.62 7.79 -2.39 -0.02 1.60 16 4 C -0.51 -30.15 7.36 25.60 0.19 -29.96 16 5 H 0.03 2.17 7.33 -2.91 -0.02 2.15 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -54.79 11.32 21.45 0.24 -54.55 16 8 Si 0.95 47.27 29.54 68.60 2.03 49.30 16 9 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 12 N -0.60 -25.68 2.78 -806.85 -2.24 -27.93 16 13 C 0.11 3.28 6.25 86.49 0.54 3.82 16 14 C -0.11 -2.48 5.26 30.68 0.16 -2.32 16 15 C -0.05 -1.18 2.41 -10.65 -0.03 -1.20 16 16 H 0.07 1.70 7.90 -2.39 -0.02 1.68 16 17 C -0.15 -2.54 5.15 -10.79 -0.06 -2.60 16 18 C -0.17 -2.29 9.67 30.60 0.30 -2.00 16 19 C -0.19 -2.90 10.18 30.60 0.31 -2.59 16 20 C -0.11 -3.44 5.35 29.71 0.16 -3.28 16 21 C 0.49 21.48 6.74 87.72 0.59 22.07 16 22 O -0.59 -32.48 13.38 -3.02 -0.04 -32.52 16 23 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.92 6.00 -2.39 -0.01 1.90 16 25 H 0.06 3.75 6.07 -2.39 -0.01 3.74 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.08 2.23 8.03 -2.39 -0.02 2.21 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.11 1.74 7.18 -2.39 -0.02 1.72 16 30 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 31 H 0.11 1.77 8.05 -2.39 -0.02 1.75 16 32 H 0.10 1.30 7.67 -2.39 -0.02 1.28 16 33 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.49 8.06 -2.39 -0.02 1.47 16 36 H 0.11 2.81 8.03 -2.39 -0.02 2.79 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -71.92 292.70 4.39 -67.53 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.03 Total: 7.77 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.37 Total: -9.61 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.00 Total: -82.47 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.04 Total: -32.52 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -71.92 4.39 -67.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.860 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds