Wall clock time and date at job start Mon Mar 30 2020 03:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.43244 * 2 1 4 4 C 1.55360 * 110.46115 * 237.35923 * 2 1 3 5 5 C 1.55137 * 102.72310 * 203.96425 * 4 2 1 6 6 C 1.53219 * 104.04446 * 37.00113 * 5 4 2 7 7 C 1.54089 * 110.89000 * 98.82742 * 6 5 4 8 8 C 1.55102 * 101.47624 * 154.28044 * 7 6 5 9 9 N 1.47517 * 104.95278 * 324.05814 * 8 7 6 10 10 C 1.34778 * 125.67004 * 203.90746 * 9 8 7 11 11 O 1.21692 * 120.00023 * 180.02562 * 10 9 8 12 12 C 1.46374 * 120.00028 * 0.03718 * 10 9 8 13 13 H 1.07999 * 119.99698 * 0.02562 * 12 10 9 14 14 C 1.40051 * 119.99966 * 180.02562 * 12 10 9 15 15 N 1.30673 * 119.99892 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99767 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47070 * 60.00231 * 16 14 12 18 18 H 1.48508 * 109.46938 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47317 * 300.00223 * 16 14 12 20 20 C 1.47291 * 108.66158 * 23.94206 * 9 8 7 21 21 C 1.52831 * 107.72580 * 337.04438 * 6 5 4 22 22 H 1.08998 * 109.47077 * 297.47310 * 1 2 3 23 23 H 1.08993 * 109.47509 * 57.47444 * 1 2 3 24 24 H 1.09003 * 109.46987 * 177.47765 * 1 2 3 25 25 H 1.09007 * 110.87870 * 85.64227 * 4 2 1 26 26 H 1.08994 * 110.74475 * 322.23248 * 4 2 1 27 27 H 1.09002 * 110.54018 * 278.32168 * 5 4 2 28 28 H 1.09003 * 110.53817 * 155.67805 * 5 4 2 29 29 H 1.09005 * 111.02515 * 272.32777 * 7 6 5 30 30 H 1.08998 * 111.02562 * 36.23052 * 7 6 5 31 31 H 1.08999 * 110.34631 * 205.18625 * 8 7 6 32 32 H 1.09004 * 110.43500 * 82.97103 * 8 7 6 33 33 H 0.96996 * 119.99852 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.95768 * 238.81036 * 20 9 8 35 35 H 1.08998 * 109.99100 * 117.59727 * 20 9 8 36 36 H 1.08999 * 110.11427 * 118.83788 * 21 6 5 37 37 H 1.09000 * 110.11319 * 240.48155 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0730 -0.7851 -1.2257 5 6 3.4881 -1.2146 -0.7567 6 6 3.3059 -1.5336 0.7308 7 6 3.1530 -3.0508 0.9526 8 6 3.6536 -3.2011 2.4129 9 7 4.7483 -2.2209 2.5428 10 6 5.7588 -2.2845 3.4324 11 8 6.6103 -1.4152 3.4493 12 6 5.8323 -3.3993 4.3780 13 1 5.0769 -4.1711 4.3626 14 6 6.8820 -3.4652 5.3028 15 7 7.7956 -2.5311 5.3216 16 14 6.9753 -4.8876 6.5100 17 1 7.0758 -6.1662 5.7616 18 1 8.1712 -4.7246 7.3754 19 1 5.7530 -4.9022 7.3532 20 6 4.5530 -1.1605 1.5393 21 6 2.0708 -0.7785 1.2208 22 1 -0.3633 0.4741 0.9118 23 1 -0.3634 0.5525 -0.8664 24 1 -0.3633 -1.0267 -0.0452 25 1 2.1363 -0.1409 -2.1027 26 1 1.4531 -1.6578 -1.4308 27 1 4.1987 -0.3987 -0.8885 28 1 3.8187 -2.0999 -1.2999 29 1 2.1103 -3.3560 0.8633 30 1 3.7835 -3.6123 0.2633 31 1 4.0269 -4.2109 2.5835 32 1 2.8528 -2.9702 3.1155 33 1 8.5225 -2.5765 5.9623 34 1 5.4205 -1.1064 0.8815 35 1 4.4020 -0.2016 2.0350 36 1 1.3194 -1.4817 1.5798 37 1 2.3461 -0.0852 2.0155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335857908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:19 Heat of formation + Delta-G solvation = -57.506688 kcal Electronic energy + Delta-G solvation = -17342.927266 eV Core-core repulsion = 14697.949720 eV Total energy + Delta-G solvation = -2644.977546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80064 -37.01050 -34.90548 -32.46451 -31.29127 -29.31809 -28.54189 -26.74862 -25.54599 -23.16507 -21.94755 -20.04044 -19.22775 -18.56827 -16.48488 -15.65114 -15.35816 -14.84312 -14.40890 -14.01639 -13.67424 -13.51633 -13.07288 -12.88286 -12.10761 -11.98833 -11.90862 -11.75520 -11.59628 -11.19288 -11.07422 -10.88426 -10.75218 -10.64729 -10.48175 -10.35257 -10.19830 -10.17894 -10.07530 -9.88098 -8.82131 -7.59459 -7.11420 -6.16765 -4.61263 3.17047 3.21566 3.23647 4.10933 4.53583 4.60951 4.68076 4.70947 4.77306 5.14095 5.32261 5.38229 5.47128 5.55642 5.61689 5.69282 5.73965 5.84361 5.89176 5.93429 5.99409 6.07934 6.14327 6.14434 6.27910 6.30488 6.42855 6.45832 6.49205 6.64464 6.72459 6.76008 7.45357 7.46562 8.14737 8.46291 9.04511 9.55545 10.61420 10.80607 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048501 B = 0.005663 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.171221 B = 4943.302116 C = 5113.713013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.075 4.075 7 C -0.122 4.122 8 C 0.119 3.881 9 N -0.645 5.645 10 C 0.571 3.429 11 O -0.578 6.578 12 C -0.540 4.540 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.130 3.870 21 C -0.104 4.104 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 0.433 -9.977 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.076 4.076 7 C -0.160 4.160 8 C -0.005 4.005 9 N -0.386 5.386 10 C 0.377 3.623 11 O -0.461 6.461 12 C -0.577 4.577 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.398 5.398 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.193 1.193 20 C 0.006 3.994 21 C -0.141 4.141 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.124 0.997 -9.799 15.621 hybrid contribution 0.006 -0.734 0.629 0.966 sum -12.118 0.263 -9.170 15.199 Atomic orbital electron populations 1.21793 0.95375 1.01570 1.01248 1.22127 0.95066 0.99305 0.95237 0.91010 1.22663 0.96389 0.99420 0.97038 1.22282 0.96837 1.01200 0.94397 1.21463 0.95400 0.95776 0.94925 1.22846 1.00661 0.94771 0.97682 1.21921 0.90200 0.94339 0.94078 1.48785 1.27756 1.24614 1.37395 1.18026 0.78350 0.86864 0.79036 1.90606 1.40062 1.42612 1.72789 1.20867 1.11246 1.08381 1.17166 0.91329 1.25729 0.94482 0.96090 0.96960 1.70017 1.09204 1.30135 1.30443 0.86432 0.78213 0.81799 0.80302 1.19261 1.20529 1.19267 1.21553 0.94895 0.92293 0.90618 1.22202 0.96175 0.98573 0.97160 0.92840 0.93079 0.92728 0.92041 0.91621 0.91459 0.91533 0.91109 0.91255 0.91458 0.93684 0.92056 0.93396 0.93445 0.91533 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.12 37.15 0.34 -0.99 16 2 C -0.10 -1.09 3.48 -88.55 -0.31 -1.40 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -1.24 6.38 -24.35 -0.16 -1.39 16 5 C -0.11 -1.39 5.83 -25.49 -0.15 -1.53 16 6 C -0.08 -1.13 0.73 -153.79 -0.11 -1.24 16 7 C -0.12 -1.81 5.90 -25.05 -0.15 -1.95 16 8 C 0.12 2.27 6.43 -2.37 -0.02 2.25 16 9 N -0.65 -15.45 3.34 -172.43 -0.58 -16.03 16 10 C 0.57 17.01 7.78 -12.99 -0.10 16.91 16 11 O -0.58 -19.54 15.35 5.20 0.08 -19.46 16 12 C -0.54 -15.66 8.99 -35.63 -0.32 -15.98 16 13 H 0.07 1.82 6.65 -52.49 -0.35 1.47 16 14 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 15 N -0.77 -23.54 11.83 55.55 0.66 -22.89 16 16 Si 0.91 20.44 29.56 -169.99 -5.02 15.42 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.13 2.65 5.98 -3.49 -0.02 2.63 16 21 C -0.10 -1.39 5.60 -26.00 -0.15 -1.53 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 27 H 0.07 0.87 7.83 -51.93 -0.41 0.47 16 28 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 29 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 30 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 31 H 0.07 1.31 7.15 -51.93 -0.37 0.93 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 34 H 0.05 1.02 7.75 -51.93 -0.40 0.62 16 35 H 0.05 1.01 7.37 -51.93 -0.38 0.62 16 36 H 0.07 0.85 7.16 -51.93 -0.37 0.48 16 37 H 0.07 0.99 7.29 -51.93 -0.38 0.61 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -34.26 292.44 -7.63 -41.89 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.94 Total: -1.49 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.23 Total: -1.85 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.08 Total: -38.91 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.08 Total: -19.46 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.26 -7.63 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335857908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.617 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds