Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.43244 * 2 1 4 4 C 1.55360 * 110.46115 * 237.35923 * 2 1 3 5 5 C 1.55137 * 102.72310 * 203.96425 * 4 2 1 6 6 C 1.53219 * 104.04446 * 37.00113 * 5 4 2 7 7 C 1.54089 * 110.89000 * 98.82742 * 6 5 4 8 8 C 1.55102 * 101.47624 * 154.28044 * 7 6 5 9 9 N 1.47517 * 104.95278 * 324.05814 * 8 7 6 10 10 C 1.34778 * 125.67004 * 203.90746 * 9 8 7 11 11 O 1.21692 * 120.00023 * 180.02562 * 10 9 8 12 12 C 1.46374 * 120.00028 * 0.03718 * 10 9 8 13 13 H 1.07999 * 119.99698 * 0.02562 * 12 10 9 14 14 C 1.40051 * 119.99966 * 180.02562 * 12 10 9 15 15 N 1.30673 * 119.99892 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99767 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47070 * 60.00231 * 16 14 12 18 18 H 1.48508 * 109.46938 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47317 * 300.00223 * 16 14 12 20 20 C 1.47291 * 108.66158 * 23.94206 * 9 8 7 21 21 C 1.52831 * 107.72580 * 337.04438 * 6 5 4 22 22 H 1.08998 * 109.47077 * 297.47310 * 1 2 3 23 23 H 1.08993 * 109.47509 * 57.47444 * 1 2 3 24 24 H 1.09003 * 109.46987 * 177.47765 * 1 2 3 25 25 H 1.09007 * 110.87870 * 85.64227 * 4 2 1 26 26 H 1.08994 * 110.74475 * 322.23248 * 4 2 1 27 27 H 1.09002 * 110.54018 * 278.32168 * 5 4 2 28 28 H 1.09003 * 110.53817 * 155.67805 * 5 4 2 29 29 H 1.09005 * 111.02515 * 272.32777 * 7 6 5 30 30 H 1.08998 * 111.02562 * 36.23052 * 7 6 5 31 31 H 1.08999 * 110.34631 * 205.18625 * 8 7 6 32 32 H 1.09004 * 110.43500 * 82.97103 * 8 7 6 33 33 H 0.96996 * 119.99852 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.95768 * 238.81036 * 20 9 8 35 35 H 1.08998 * 109.99100 * 117.59727 * 20 9 8 36 36 H 1.08999 * 110.11427 * 118.83788 * 21 6 5 37 37 H 1.09000 * 110.11319 * 240.48155 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0730 -0.7851 -1.2257 5 6 3.4881 -1.2146 -0.7567 6 6 3.3059 -1.5336 0.7308 7 6 3.1530 -3.0508 0.9526 8 6 3.6536 -3.2011 2.4129 9 7 4.7483 -2.2209 2.5428 10 6 5.7588 -2.2845 3.4324 11 8 6.6103 -1.4152 3.4493 12 6 5.8323 -3.3993 4.3780 13 1 5.0769 -4.1711 4.3626 14 6 6.8820 -3.4652 5.3028 15 7 7.7956 -2.5311 5.3216 16 14 6.9753 -4.8876 6.5100 17 1 7.0758 -6.1662 5.7616 18 1 8.1712 -4.7246 7.3754 19 1 5.7530 -4.9022 7.3532 20 6 4.5530 -1.1605 1.5393 21 6 2.0708 -0.7785 1.2208 22 1 -0.3633 0.4741 0.9118 23 1 -0.3634 0.5525 -0.8664 24 1 -0.3633 -1.0267 -0.0452 25 1 2.1363 -0.1409 -2.1027 26 1 1.4531 -1.6578 -1.4308 27 1 4.1987 -0.3987 -0.8885 28 1 3.8187 -2.0999 -1.2999 29 1 2.1103 -3.3560 0.8633 30 1 3.7835 -3.6123 0.2633 31 1 4.0269 -4.2109 2.5835 32 1 2.8528 -2.9702 3.1155 33 1 8.5225 -2.5765 5.9623 34 1 5.4205 -1.1064 0.8815 35 1 4.4020 -0.2016 2.0350 36 1 1.3194 -1.4817 1.5798 37 1 2.3461 -0.0852 2.0155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335857908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = -79.909009 kcal Electronic energy + Delta-G solvation = -17343.898703 eV Core-core repulsion = 14697.949720 eV Total energy + Delta-G solvation = -2645.948983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15635 -38.88708 -36.54600 -34.67641 -32.61187 -30.64558 -29.97111 -28.53259 -26.92198 -24.65593 -23.30920 -21.25431 -20.89915 -19.89956 -18.41735 -17.64123 -16.60840 -16.34558 -16.15995 -15.48387 -15.20083 -14.82631 -14.41121 -13.92480 -13.74631 -13.63118 -13.28550 -13.15934 -12.94596 -12.80233 -12.70641 -12.45540 -12.39982 -12.06789 -11.81682 -11.59465 -11.49347 -11.29981 -11.24304 -11.12135 -10.94693 -9.91495 -9.12087 -8.32599 -6.88924 1.37384 1.41646 1.53666 2.21937 2.41682 2.87231 3.48384 3.51870 3.62609 3.66617 4.08666 4.20625 4.31915 4.38830 4.45579 4.60997 4.68912 4.74364 4.77184 4.83326 4.92600 4.94481 4.98043 5.09633 5.16033 5.19352 5.25216 5.27040 5.29970 5.41034 5.43389 5.51101 5.62391 5.65232 6.01340 6.38902 6.82731 7.45955 8.41988 8.63795 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.048501 B = 0.005663 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.171221 B = 4943.302116 C = 5113.713013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.065 0.935 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.066 4.066 7 C -0.106 4.106 8 C 0.110 3.890 9 N -0.654 5.654 10 C 0.548 3.452 11 O -0.637 6.637 12 C -0.566 4.566 13 H 0.088 0.912 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 1.001 2.999 17 H -0.252 1.252 18 H -0.272 1.272 19 H -0.253 1.253 20 C 0.126 3.874 21 C -0.103 4.103 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.275 0.725 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.080 0.920 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 -1.570 -10.815 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.083 0.917 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.066 4.066 7 C -0.144 4.144 8 C -0.013 4.013 9 N -0.391 5.391 10 C 0.355 3.645 11 O -0.525 6.525 12 C -0.602 4.602 13 H 0.106 0.894 14 C -0.188 4.188 15 N -0.453 5.453 16 Si 0.820 3.180 17 H -0.176 1.176 18 H -0.197 1.197 19 H -0.177 1.177 20 C 0.003 3.997 21 C -0.140 4.140 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.129 0.871 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.774 -1.018 -10.684 18.261 hybrid contribution 0.814 -0.042 0.866 1.190 sum -13.959 -1.060 -9.818 17.099 Atomic orbital electron populations 1.21762 0.93588 1.02417 1.01826 1.22107 0.96475 0.98665 0.94209 0.91671 1.22636 0.94482 1.00199 0.97056 1.22289 0.98563 1.01407 0.92499 1.21458 0.93182 0.96282 0.95701 1.22839 1.02880 0.94312 0.94332 1.22210 0.88795 0.92736 0.97529 1.48653 1.27526 1.26390 1.36564 1.18501 0.79025 0.86777 0.80235 1.90540 1.42733 1.44488 1.74763 1.21378 1.12396 1.08775 1.17656 0.89373 1.27072 0.93290 0.99498 0.98972 1.70202 1.10250 1.33057 1.31831 0.85032 0.78878 0.77121 0.77013 1.17573 1.19711 1.17679 1.21751 0.97140 0.90801 0.90039 1.22191 0.95642 0.98512 0.97695 0.93083 0.91712 0.91789 0.90451 0.89876 0.92487 0.90585 0.87088 0.90760 0.91936 0.92782 0.91488 0.95416 0.95585 0.90111 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.12 71.98 0.66 -1.46 16 2 C -0.10 -1.87 3.48 -9.45 -0.03 -1.91 16 3 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -1.85 6.38 32.14 0.20 -1.65 16 5 C -0.11 -2.57 5.83 31.40 0.18 -2.39 16 6 C -0.07 -1.90 0.73 -51.72 -0.04 -1.94 16 7 C -0.11 -2.87 5.90 31.68 0.19 -2.69 16 8 C 0.11 4.12 6.43 86.90 0.56 4.68 16 9 N -0.65 -32.44 3.34 -817.67 -2.73 -35.17 16 10 C 0.55 34.25 7.78 86.36 0.67 34.92 16 11 O -0.64 -45.89 15.35 -4.32 -0.07 -45.95 16 12 C -0.57 -33.57 8.99 24.83 0.22 -33.34 16 13 H 0.09 4.69 6.65 -2.91 -0.02 4.67 16 14 C 0.03 1.53 5.50 85.31 0.47 2.00 16 15 N -0.82 -52.30 11.83 21.84 0.26 -52.04 16 16 Si 1.00 41.89 29.56 68.60 2.03 43.92 16 17 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 20 C 0.13 5.38 5.98 86.31 0.52 5.90 16 21 C -0.10 -2.60 5.60 31.07 0.17 -2.42 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 25 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.08 1.22 8.04 -2.39 -0.02 1.20 16 27 H 0.06 1.45 7.83 -2.39 -0.02 1.43 16 28 H 0.08 1.65 7.56 -2.39 -0.02 1.63 16 29 H 0.11 2.21 7.69 -2.38 -0.02 2.19 16 30 H 0.07 1.98 7.71 -2.39 -0.02 1.96 16 31 H 0.06 2.38 7.15 -2.39 -0.02 2.36 16 32 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.28 15.77 8.29 -92.71 -0.77 15.00 16 34 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 35 H 0.03 1.19 7.37 -2.39 -0.02 1.17 16 36 H 0.08 1.81 7.16 -2.39 -0.02 1.79 16 37 H 0.04 1.25 7.29 -2.39 -0.02 1.23 16 Total: -1.00 -79.69 292.44 4.30 -75.39 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.04 Total: 14.15 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 3.77 Total: -0.30 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.47 Total: -87.21 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.07 Total: -45.95 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -79.69 4.30 -75.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335857908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.515 kcal (2) G-P(sol) polarization free energy of solvation -79.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds