Wall clock time and date at job start Mon Mar 30 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.02487 * 2 1 4 4 C 1.54398 * 110.04225 * 238.54168 * 2 1 3 5 5 C 1.55164 * 104.39275 * 217.40960 * 4 2 1 6 6 C 1.53365 * 102.61338 * 36.31885 * 5 4 2 7 7 C 1.53615 * 111.63058 * 201.59292 * 6 5 4 8 8 C 1.54595 * 102.77176 * 273.45450 * 7 6 5 9 9 N 1.47141 * 107.33478 * 339.19688 * 8 7 6 10 10 C 1.34773 * 125.60747 * 179.10233 * 9 8 7 11 11 O 1.21688 * 120.00512 * 179.97438 * 10 9 8 12 12 C 1.46372 * 119.99813 * 359.97438 * 10 9 8 13 13 H 1.07999 * 120.00498 * 359.97438 * 12 10 9 14 14 C 1.40054 * 120.00293 * 179.97438 * 12 10 9 15 15 N 1.30675 * 119.99810 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00503 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47078 * 89.99313 * 16 14 12 18 18 H 1.48492 * 109.47040 * 209.99858 * 16 14 12 19 19 H 1.48502 * 109.46671 * 329.99966 * 16 14 12 20 20 C 1.47723 * 108.78859 * 359.07440 * 9 8 7 21 21 C 1.52726 * 106.00944 * 323.82708 * 6 5 4 22 22 H 1.09002 * 109.47153 * 298.58995 * 1 2 3 23 23 H 1.09001 * 109.46832 * 178.59186 * 1 2 3 24 24 H 1.09004 * 109.47261 * 58.59167 * 1 2 3 25 25 H 1.09002 * 110.44172 * 336.13149 * 4 2 1 26 26 H 1.08993 * 110.44933 * 98.67541 * 4 2 1 27 27 H 1.09000 * 110.77784 * 278.03705 * 5 4 2 28 28 H 1.08997 * 110.94436 * 154.67987 * 5 4 2 29 29 H 1.09000 * 110.75325 * 31.77845 * 7 6 5 30 30 H 1.09005 * 110.75121 * 155.13180 * 7 6 5 31 31 H 1.09000 * 109.87705 * 98.63725 * 8 7 6 32 32 H 1.09006 * 109.87297 * 219.62443 * 8 7 6 33 33 H 0.96993 * 119.99944 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.39489 * 263.69932 * 20 9 8 35 35 H 1.09001 * 110.39006 * 141.30662 * 20 9 8 36 36 H 1.09004 * 110.11425 * 262.82887 * 21 6 5 37 37 H 1.09000 * 110.11704 * 141.17918 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0591 -0.7570 -1.2373 5 6 3.3128 -1.5114 -0.7209 6 6 2.9009 -1.9112 0.7013 7 6 4.1240 -2.1913 1.5875 8 6 4.4208 -3.6809 1.2994 9 7 3.1884 -4.2772 0.7601 10 6 3.0430 -5.5584 0.3681 11 8 1.9731 -5.9449 -0.0640 12 6 4.1721 -6.4852 0.4621 13 1 5.1218 -6.1422 0.8452 14 6 4.0209 -7.8167 0.0552 15 7 2.8716 -8.2319 -0.4079 16 14 5.4620 -8.9993 0.1745 17 1 5.4484 -9.6638 1.5025 18 1 5.3503 -10.0250 -0.8934 19 1 6.7328 -8.2491 0.0094 20 6 2.1366 -3.2408 0.7196 21 6 2.0586 -0.7551 1.2366 22 1 -0.3633 0.4918 0.9024 23 1 -0.3633 -1.0274 -0.0253 24 1 -0.3634 0.5356 -0.8771 25 1 1.3121 -1.4632 -1.5997 26 1 2.3343 -0.0549 -2.0243 27 1 4.1803 -0.8517 -0.7012 28 1 3.5139 -2.3941 -1.3279 29 1 4.9662 -1.5656 1.2923 30 1 3.8809 -2.0424 2.6396 31 1 5.2238 -3.7639 0.5671 32 1 4.7068 -4.1869 2.2216 33 1 2.7668 -9.1542 -0.6893 34 1 1.5063 -3.3043 1.6067 35 1 1.5349 -3.3454 -0.1832 36 1 2.6746 -0.0930 1.8451 37 1 1.2257 -1.1394 1.8254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335857909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:21 Heat of formation + Delta-G solvation = -58.757298 kcal Electronic energy + Delta-G solvation = -17491.845938 eV Core-core repulsion = 14846.814162 eV Total energy + Delta-G solvation = -2645.031776 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.83202 -36.97691 -34.93526 -32.46691 -31.08431 -29.47329 -28.45532 -26.87450 -25.28885 -23.46154 -21.85364 -19.90514 -19.11087 -18.55148 -16.59477 -15.48126 -15.32610 -14.82674 -14.50597 -14.02436 -13.62565 -13.35079 -13.18119 -12.74292 -12.26075 -12.01724 -11.93267 -11.65348 -11.40309 -11.16064 -11.04918 -10.81844 -10.77521 -10.58564 -10.46564 -10.32170 -10.18021 -10.09199 -10.03086 -9.95441 -8.82969 -7.59389 -7.10385 -6.16932 -4.61172 3.15297 3.21856 3.25492 4.11057 4.56804 4.61196 4.69331 4.75874 4.85309 5.24110 5.34801 5.36510 5.58028 5.60565 5.63629 5.74554 5.79127 5.84803 5.95065 6.02005 6.03591 6.13167 6.17093 6.25125 6.25457 6.38671 6.46128 6.50248 6.57545 6.64665 6.74331 6.78858 7.44937 7.47809 8.15014 8.46796 9.04793 9.55948 10.61306 10.80655 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043440 B = 0.006194 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.412888 B = 4519.532532 C = 4805.869024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.066 0.934 4 C -0.120 4.120 5 C -0.106 4.106 6 C -0.076 4.076 7 C -0.122 4.122 8 C 0.122 3.878 9 N -0.645 5.645 10 C 0.571 3.429 11 O -0.578 6.578 12 C -0.539 4.539 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.132 3.868 21 C -0.104 4.104 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.268 0.732 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 14.668 2.060 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.158 4.158 5 C -0.144 4.144 6 C -0.076 4.076 7 C -0.160 4.160 8 C -0.002 4.002 9 N -0.385 5.385 10 C 0.377 3.623 11 O -0.461 6.461 12 C -0.575 4.575 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.398 5.398 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 C 0.008 3.992 21 C -0.142 4.142 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.784 14.189 1.710 14.313 hybrid contribution 0.797 -0.564 0.150 0.988 sum 1.581 13.625 1.860 13.842 Atomic orbital electron populations 1.21893 0.95294 1.02064 1.01013 1.21810 0.95475 0.98888 0.95202 0.91554 1.22523 0.97851 0.98660 0.96767 1.22255 0.96955 0.99861 0.95311 1.21478 0.95596 0.95052 0.95520 1.22544 0.97396 0.96718 0.99310 1.21608 0.89425 0.91289 0.97918 1.48781 1.10081 1.10077 1.69535 1.18016 0.89255 0.77922 0.77077 1.90604 1.29539 1.75314 1.50598 1.20905 0.97164 0.94107 1.45370 0.91339 1.25734 0.96062 0.98571 0.92906 1.70026 1.23394 1.16133 1.30248 0.86376 0.81994 0.80026 0.78403 1.19727 1.20441 1.18891 1.21611 0.91525 0.85779 1.00295 1.22032 0.99032 0.96128 0.97037 0.93022 0.92277 0.93086 0.91391 0.92198 0.91815 0.90915 0.91078 0.91429 0.93047 0.93160 0.92124 0.93995 0.91915 0.91815 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.86 37.16 0.33 -1.24 16 2 C -0.10 -1.09 3.52 -89.24 -0.31 -1.41 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.54 6.22 -24.85 -0.15 -1.70 16 5 C -0.11 -1.54 5.75 -25.40 -0.15 -1.69 16 6 C -0.08 -1.15 0.61 -153.95 -0.09 -1.24 16 7 C -0.12 -1.78 5.84 -25.57 -0.15 -1.93 16 8 C 0.12 2.33 6.01 -2.85 -0.02 2.31 16 9 N -0.64 -15.31 3.34 -172.63 -0.58 -15.88 16 10 C 0.57 16.90 7.78 -12.99 -0.10 16.80 16 11 O -0.58 -19.38 15.30 5.20 0.08 -19.30 16 12 C -0.54 -15.60 9.06 -35.63 -0.32 -15.93 16 13 H 0.07 1.83 7.16 -52.49 -0.38 1.46 16 14 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 15 N -0.77 -23.49 11.83 55.55 0.66 -22.84 16 16 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 20 C 0.13 2.65 5.75 -3.18 -0.02 2.63 16 21 C -0.10 -1.30 5.66 -26.22 -0.15 -1.45 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.81 7.88 -51.93 -0.41 0.41 16 28 H 0.07 1.26 8.01 -51.93 -0.42 0.84 16 29 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 30 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 34 H 0.04 0.84 7.76 -51.93 -0.40 0.44 16 35 H 0.06 1.37 7.71 -51.93 -0.40 0.97 16 36 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 37 H 0.07 0.86 7.14 -51.93 -0.37 0.49 16 LS Contribution 294.30 15.07 4.44 4.44 Total: -1.00 -33.99 294.30 -7.76 -41.75 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.10 Total: -1.13 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.23 Total: -2.46 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.08 Total: -38.72 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.30 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.99 -7.76 -41.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335857909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.005 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds