Wall clock time and date at job start Mon Mar 30 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.02487 * 2 1 4 4 C 1.54398 * 110.04225 * 238.54168 * 2 1 3 5 5 C 1.55164 * 104.39275 * 217.40960 * 4 2 1 6 6 C 1.53365 * 102.61338 * 36.31885 * 5 4 2 7 7 C 1.53615 * 111.63058 * 201.59292 * 6 5 4 8 8 C 1.54595 * 102.77176 * 273.45450 * 7 6 5 9 9 N 1.47141 * 107.33478 * 339.19688 * 8 7 6 10 10 C 1.34773 * 125.60747 * 179.10233 * 9 8 7 11 11 O 1.21688 * 120.00512 * 179.97438 * 10 9 8 12 12 C 1.46372 * 119.99813 * 359.97438 * 10 9 8 13 13 H 1.07999 * 120.00498 * 359.97438 * 12 10 9 14 14 C 1.40054 * 120.00293 * 179.97438 * 12 10 9 15 15 N 1.30675 * 119.99810 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00503 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47078 * 89.99313 * 16 14 12 18 18 H 1.48492 * 109.47040 * 209.99858 * 16 14 12 19 19 H 1.48502 * 109.46671 * 329.99966 * 16 14 12 20 20 C 1.47723 * 108.78859 * 359.07440 * 9 8 7 21 21 C 1.52726 * 106.00944 * 323.82708 * 6 5 4 22 22 H 1.09002 * 109.47153 * 298.58995 * 1 2 3 23 23 H 1.09001 * 109.46832 * 178.59186 * 1 2 3 24 24 H 1.09004 * 109.47261 * 58.59167 * 1 2 3 25 25 H 1.09002 * 110.44172 * 336.13149 * 4 2 1 26 26 H 1.08993 * 110.44933 * 98.67541 * 4 2 1 27 27 H 1.09000 * 110.77784 * 278.03705 * 5 4 2 28 28 H 1.08997 * 110.94436 * 154.67987 * 5 4 2 29 29 H 1.09000 * 110.75325 * 31.77845 * 7 6 5 30 30 H 1.09005 * 110.75121 * 155.13180 * 7 6 5 31 31 H 1.09000 * 109.87705 * 98.63725 * 8 7 6 32 32 H 1.09006 * 109.87297 * 219.62443 * 8 7 6 33 33 H 0.96993 * 119.99944 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.39489 * 263.69932 * 20 9 8 35 35 H 1.09001 * 110.39006 * 141.30662 * 20 9 8 36 36 H 1.09004 * 110.11425 * 262.82887 * 21 6 5 37 37 H 1.09000 * 110.11704 * 141.17918 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0591 -0.7570 -1.2373 5 6 3.3128 -1.5114 -0.7209 6 6 2.9009 -1.9112 0.7013 7 6 4.1240 -2.1913 1.5875 8 6 4.4208 -3.6809 1.2994 9 7 3.1884 -4.2772 0.7601 10 6 3.0430 -5.5584 0.3681 11 8 1.9731 -5.9449 -0.0640 12 6 4.1721 -6.4852 0.4621 13 1 5.1218 -6.1422 0.8452 14 6 4.0209 -7.8167 0.0552 15 7 2.8716 -8.2319 -0.4079 16 14 5.4620 -8.9993 0.1745 17 1 5.4484 -9.6638 1.5025 18 1 5.3503 -10.0250 -0.8934 19 1 6.7328 -8.2491 0.0094 20 6 2.1366 -3.2408 0.7196 21 6 2.0586 -0.7551 1.2366 22 1 -0.3633 0.4918 0.9024 23 1 -0.3633 -1.0274 -0.0253 24 1 -0.3634 0.5356 -0.8771 25 1 1.3121 -1.4632 -1.5997 26 1 2.3343 -0.0549 -2.0243 27 1 4.1803 -0.8517 -0.7012 28 1 3.5139 -2.3941 -1.3279 29 1 4.9662 -1.5656 1.2923 30 1 3.8809 -2.0424 2.6396 31 1 5.2238 -3.7639 0.5671 32 1 4.7068 -4.1869 2.2216 33 1 2.7668 -9.1542 -0.6893 34 1 1.5063 -3.3043 1.6067 35 1 1.5349 -3.3454 -0.1832 36 1 2.6746 -0.0930 1.8451 37 1 1.2257 -1.1394 1.8254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335857909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:21 Heat of formation + Delta-G solvation = -81.003376 kcal Electronic energy + Delta-G solvation = -17492.810601 eV Core-core repulsion = 14846.814162 eV Total energy + Delta-G solvation = -2645.996439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19919 -38.86466 -36.58539 -34.67844 -32.53664 -30.69593 -29.91670 -28.71472 -26.78927 -24.85300 -23.32039 -21.40888 -20.56905 -19.90826 -18.47997 -17.63323 -16.64514 -16.23763 -16.03266 -15.74318 -15.15026 -14.74464 -14.43118 -14.12226 -13.80598 -13.37867 -13.35564 -13.22443 -13.01563 -12.84343 -12.72313 -12.47876 -12.38156 -12.02974 -11.82801 -11.58868 -11.47898 -11.25871 -11.24108 -11.16704 -10.96556 -9.90595 -9.08968 -8.32818 -6.88907 1.36785 1.39112 1.54630 2.21582 2.41717 2.88300 3.51135 3.53700 3.64987 3.68771 4.07917 4.17624 4.30721 4.36227 4.49848 4.58055 4.66846 4.73289 4.80059 4.84884 4.88825 4.99251 4.99542 5.09148 5.14074 5.17230 5.19087 5.28164 5.34768 5.35651 5.41928 5.48488 5.63357 5.68117 6.01652 6.40110 6.82790 7.47229 8.42711 8.63962 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043440 B = 0.006194 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.412888 B = 4519.532532 C = 4805.869024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.095 0.905 4 C -0.121 4.121 5 C -0.106 4.106 6 C -0.067 4.067 7 C -0.106 4.106 8 C 0.113 3.887 9 N -0.652 5.652 10 C 0.549 3.451 11 O -0.636 6.636 12 C -0.565 4.565 13 H 0.086 0.914 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 1.000 3.000 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.248 1.248 20 C 0.128 3.872 21 C -0.100 4.100 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.031 0.969 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.275 0.725 34 H 0.037 0.963 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 16.888 3.206 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.113 0.887 4 C -0.158 4.158 5 C -0.143 4.143 6 C -0.068 4.068 7 C -0.144 4.144 8 C -0.011 4.011 9 N -0.390 5.390 10 C 0.355 3.645 11 O -0.524 6.524 12 C -0.601 4.601 13 H 0.104 0.896 14 C -0.188 4.188 15 N -0.454 5.454 16 Si 0.819 3.181 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.171 1.171 20 C 0.005 3.995 21 C -0.137 4.137 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.113 0.887 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.187 16.479 2.884 17.030 hybrid contribution 0.000 -1.226 -0.220 1.245 sum 3.187 15.253 2.664 15.809 Atomic orbital electron populations 1.21890 0.95209 1.00879 1.02307 1.21818 0.95571 0.99813 0.93569 0.88718 1.22527 0.96486 0.98531 0.98289 1.22258 0.98887 0.99000 0.94196 1.21449 0.95638 0.93064 0.96644 1.22564 0.98070 0.93348 1.00373 1.21895 0.87332 0.94405 0.97429 1.48626 1.12785 1.09301 1.68268 1.18459 0.88910 0.80054 0.77042 1.90539 1.31397 1.77287 1.53204 1.21395 0.97672 0.95088 1.45978 0.89614 1.27065 0.99683 1.00608 0.91478 1.70205 1.26675 1.17146 1.31327 0.84988 0.77353 0.76782 0.78974 1.18389 1.19563 1.17095 1.21785 0.91280 0.88038 0.98445 1.22046 0.98803 0.95213 0.97672 0.91486 0.94726 0.92083 0.94131 0.90132 0.88756 0.94957 0.87511 0.89419 0.93283 0.93220 0.91504 0.94441 0.95226 0.88686 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.86 71.98 0.64 -2.27 16 2 C -0.09 -1.78 3.52 -9.90 -0.03 -1.82 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.12 -2.95 6.22 31.81 0.20 -2.75 16 5 C -0.11 -2.94 5.75 31.46 0.18 -2.76 16 6 C -0.07 -1.94 0.61 -51.82 -0.03 -1.97 16 7 C -0.11 -2.76 5.84 31.34 0.18 -2.58 16 8 C 0.11 4.23 6.01 86.80 0.52 4.75 16 9 N -0.65 -32.21 3.34 -818.30 -2.73 -34.94 16 10 C 0.55 34.26 7.78 86.36 0.67 34.94 16 11 O -0.64 -45.69 15.30 -4.31 -0.07 -45.76 16 12 C -0.56 -33.67 9.06 24.83 0.23 -33.44 16 13 H 0.09 4.62 7.16 -2.91 -0.02 4.60 16 14 C 0.03 1.53 5.50 85.31 0.47 2.00 16 15 N -0.82 -52.41 11.83 21.84 0.26 -52.15 16 16 Si 1.00 42.15 29.56 68.60 2.03 44.18 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 20 C 0.13 5.37 5.75 86.27 0.50 5.86 16 21 C -0.10 -2.16 5.66 30.92 0.18 -1.99 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.04 1.19 7.71 -2.39 -0.02 1.18 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.06 7.88 -2.39 -0.02 2.04 16 28 H 0.03 1.14 8.01 -2.39 -0.02 1.12 16 29 H 0.11 2.12 7.82 -2.39 -0.02 2.10 16 30 H 0.09 1.99 8.06 -2.38 -0.02 1.97 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.28 15.75 8.29 -92.71 -0.77 14.98 16 34 H 0.04 1.57 7.76 -2.39 -0.02 1.56 16 35 H 0.03 1.41 7.71 -2.39 -0.02 1.39 16 36 H 0.09 1.56 7.90 -2.39 -0.02 1.54 16 37 H 0.06 1.43 7.14 -2.39 -0.02 1.42 16 Total: -1.00 -80.16 294.30 4.21 -75.95 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.03 Total: 14.76 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 3.69 Total: -2.04 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.47 Total: -87.09 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.07 Total: -45.76 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -80.16 4.21 -75.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335857909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.054 kcal (2) G-P(sol) polarization free energy of solvation -80.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds