Wall clock time and date at job start Mon Mar 30 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47246 * 2 1 4 4 C 1.50700 * 109.47000 * 120.00737 * 2 1 3 5 5 H 1.07994 * 120.00144 * 116.69000 * 4 2 1 6 6 C 1.37881 * 119.99669 * 296.68096 * 4 2 1 7 7 N 1.31517 * 120.00002 * 352.66220 * 6 4 2 8 8 Si 1.86801 * 119.99903 * 172.66369 * 6 4 2 9 9 H 1.48500 * 109.46962 * 265.07227 * 8 6 4 10 10 H 1.48494 * 109.47287 * 145.07119 * 8 6 4 11 11 H 1.48498 * 109.47041 * 25.07147 * 8 6 4 12 12 N 1.46501 * 109.46628 * 240.00212 * 2 1 3 13 13 C 1.34782 * 119.99999 * 85.00308 * 12 2 1 14 14 O 1.21280 * 119.99712 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00141 * 179.97438 * 13 12 2 16 16 C 1.52999 * 110.67493 * 300.70496 * 15 13 12 17 17 C 1.54888 * 110.75650 * 177.46419 * 15 13 12 18 18 C 1.54265 * 104.19803 * 279.63321 * 17 15 13 19 19 H 1.09000 * 117.41296 * 116.36527 * 18 17 15 20 20 C 1.52999 * 118.20017 * 272.21087 * 18 17 15 21 21 C 1.52997 * 60.37861 * 93.61467 * 20 18 17 22 22 H 1.09004 * 119.29784 * 111.30778 * 21 20 18 23 23 C 1.54752 * 118.23650 * 266.33556 * 21 20 18 24 24 H 1.08999 * 109.47030 * 57.85084 * 1 2 3 25 25 H 1.08998 * 109.47195 * 177.85221 * 1 2 3 26 26 H 1.09000 * 109.46810 * 297.84936 * 1 2 3 27 27 H 0.97002 * 119.99718 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00230 * 264.99570 * 12 2 1 29 29 H 1.08998 * 109.46941 * 59.29536 * 16 15 13 30 30 H 1.09001 * 109.46706 * 179.29392 * 16 15 13 31 31 H 1.09000 * 109.46916 * 299.29285 * 16 15 13 32 32 H 1.09002 * 110.48649 * 38.31069 * 17 15 13 33 33 H 1.09003 * 110.48816 * 160.81844 * 17 15 13 34 34 H 1.09004 * 117.46168 * 201.21596 * 20 18 17 35 35 H 1.09004 * 117.45773 * 346.01849 * 20 18 17 36 36 H 1.09004 * 110.49923 * 329.21630 * 23 21 20 37 37 H 1.08996 * 110.69308 * 206.42400 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6084 -1.6188 1.1321 6 6 1.7566 -0.2010 2.4816 7 7 1.1824 0.9762 2.6002 8 14 2.1985 -1.1828 4.0081 9 1 1.0168 -1.9642 4.4533 10 1 2.6148 -0.2549 5.0901 11 1 3.3153 -2.1099 3.6942 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6497 -0.7284 -3.5876 16 6 4.0460 -1.3053 -3.3457 17 6 2.6535 0.2247 -4.8085 18 6 1.1875 0.2306 -5.2885 19 1 0.6464 1.1754 -5.2373 20 6 0.7497 -0.8419 -6.2881 21 6 0.5563 -1.0810 -4.7894 22 1 -0.4532 -1.1038 -4.3788 23 6 1.6633 -1.8413 -4.0204 24 1 -0.3633 0.5468 -0.8701 25 1 -0.3633 -1.0269 -0.0385 26 1 -0.3633 0.4801 0.9087 27 1 0.9881 1.3345 3.4805 28 1 2.2490 -1.6317 -1.1528 29 1 4.0100 -2.0062 -2.5117 30 1 4.3848 -1.8245 -4.2422 31 1 4.7377 -0.4963 -3.1109 32 1 2.9609 1.2268 -4.5093 33 1 3.3112 -0.1578 -5.5891 34 1 -0.1405 -0.6402 -6.8840 35 1 1.5325 -1.4099 -6.7908 36 1 2.1597 -2.5576 -4.6751 37 1 1.2491 -2.3448 -3.1469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339503052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:52 Heat of formation + Delta-G solvation = -28.814116 kcal Electronic energy + Delta-G solvation = -17489.967519 eV Core-core repulsion = 14846.234177 eV Total energy + Delta-G solvation = -2643.733342 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29930 -37.74206 -34.69632 -33.41614 -32.13922 -28.90352 -27.99473 -26.86033 -25.21018 -22.95387 -21.34069 -20.28289 -19.55696 -18.77182 -16.89680 -16.01488 -15.41395 -15.17135 -14.38937 -14.32150 -13.57023 -13.14273 -12.99099 -12.67310 -12.50785 -12.30353 -11.97843 -11.74529 -11.47357 -11.16296 -11.03341 -10.98190 -10.75359 -10.59202 -10.49355 -10.30449 -10.25414 -9.92297 -9.59275 -9.06811 -8.74814 -8.48685 -7.84195 -6.12198 -4.18431 3.25178 3.32310 3.34248 3.47688 3.74156 4.13896 4.40149 4.61218 4.74908 4.93953 5.21440 5.23463 5.33293 5.40085 5.50173 5.56547 5.63377 5.74470 5.77580 5.93039 5.97923 6.09846 6.14095 6.34520 6.36033 6.38335 6.51116 6.81125 6.95244 7.13987 7.50329 7.61102 7.71454 7.91086 8.11651 8.75028 8.83284 9.22651 9.48741 10.95951 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.006158 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.671687 B = 4546.205521 C = 4721.705021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.519 3.481 14 O -0.552 6.552 15 C -0.089 4.089 16 C -0.135 4.135 17 C -0.071 4.071 18 C -0.153 4.153 19 H 0.109 0.891 20 C -0.156 4.156 21 C -0.170 4.170 22 H 0.107 0.893 23 C -0.079 4.079 24 H 0.017 0.983 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.386 0.614 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -6.310 -13.593 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.356 5.356 13 C 0.303 3.697 14 O -0.430 6.430 15 C -0.093 4.093 16 C -0.193 4.193 17 C -0.109 4.109 18 C -0.171 4.171 19 H 0.127 0.873 20 C -0.193 4.193 21 C -0.188 4.188 22 H 0.125 0.875 23 C -0.117 4.117 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.642 -5.311 -13.429 14.534 hybrid contribution 0.138 -0.927 1.018 1.383 sum 1.780 -6.237 -12.411 14.004 Atomic orbital electron populations 1.22000 0.98899 0.98617 1.00483 1.18705 0.90593 0.94324 0.80184 0.93059 1.21210 1.35294 1.10316 0.90409 0.92129 1.24895 0.95021 0.94694 0.99019 1.69976 1.41976 1.16048 1.23955 0.86484 0.78631 0.79839 0.82451 1.20581 1.21134 1.19835 1.46461 1.65219 1.13404 1.10483 1.20022 0.78213 0.87196 0.84238 1.90621 1.51183 1.16185 1.85033 1.21999 0.96258 0.96107 0.94917 1.21737 0.94493 1.01074 1.01967 1.21813 0.94141 1.00261 0.94670 1.23150 0.96840 0.93820 1.03325 0.87259 1.23042 1.02603 1.02139 0.91536 1.23269 0.99701 1.00474 0.95327 0.87479 1.22070 0.94188 0.95921 0.99529 0.96373 0.95433 0.90527 0.92626 0.78146 0.91823 0.92019 0.91973 0.89989 0.91391 0.88826 0.89262 0.90803 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.32 37.16 0.35 -3.19 16 2 C 0.26 6.81 2.45 -69.08 -0.17 6.64 16 3 H 0.05 1.54 7.57 -51.93 -0.39 1.15 16 4 C -0.53 -14.28 8.69 -34.44 -0.30 -14.58 16 5 H 0.06 1.55 7.73 -52.49 -0.41 1.14 16 6 C 0.07 1.83 5.21 -17.82 -0.09 1.73 16 7 N -0.88 -25.31 11.91 55.43 0.66 -24.65 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.96 4.80 -54.93 -0.26 -15.22 16 13 C 0.52 10.51 6.19 -10.98 -0.07 10.44 16 14 O -0.55 -13.41 15.22 5.56 0.08 -13.33 16 15 C -0.09 -1.34 0.77 -153.67 -0.12 -1.45 16 16 C -0.14 -1.71 8.52 37.16 0.32 -1.39 16 17 C -0.07 -1.01 5.25 -25.07 -0.13 -1.14 16 18 C -0.15 -2.15 6.60 -89.50 -0.59 -2.74 16 19 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 20 C -0.16 -1.75 10.08 -26.73 -0.27 -2.02 16 21 C -0.17 -2.29 6.77 -89.24 -0.60 -2.90 16 22 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 23 C -0.08 -1.04 5.59 -24.81 -0.14 -1.17 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 2.07 6.59 -51.93 -0.34 1.73 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.39 7.14 7.79 -40.82 -0.32 6.83 16 29 H 0.06 0.79 7.61 -51.93 -0.40 0.39 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.32 7.43 -51.93 -0.39 0.93 16 33 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -30.40 300.18 -7.83 -38.23 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.99 Total: 6.48 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.82 Total: -11.78 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.40 Total: -39.86 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.40 -7.83 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339503052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.416 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds