Wall clock time and date at job start Mon Mar 30 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47246 * 2 1 4 4 C 1.50700 * 109.47000 * 120.00737 * 2 1 3 5 5 H 1.07994 * 120.00144 * 116.69000 * 4 2 1 6 6 C 1.37881 * 119.99669 * 296.68096 * 4 2 1 7 7 N 1.31517 * 120.00002 * 352.66220 * 6 4 2 8 8 Si 1.86801 * 119.99903 * 172.66369 * 6 4 2 9 9 H 1.48500 * 109.46962 * 265.07227 * 8 6 4 10 10 H 1.48494 * 109.47287 * 145.07119 * 8 6 4 11 11 H 1.48498 * 109.47041 * 25.07147 * 8 6 4 12 12 N 1.46501 * 109.46628 * 240.00212 * 2 1 3 13 13 C 1.34782 * 119.99999 * 85.00308 * 12 2 1 14 14 O 1.21280 * 119.99712 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00141 * 179.97438 * 13 12 2 16 16 C 1.52999 * 110.67493 * 300.70496 * 15 13 12 17 17 C 1.54888 * 110.75650 * 177.46419 * 15 13 12 18 18 C 1.54265 * 104.19803 * 279.63321 * 17 15 13 19 19 H 1.09000 * 117.41296 * 116.36527 * 18 17 15 20 20 C 1.52999 * 118.20017 * 272.21087 * 18 17 15 21 21 C 1.52997 * 60.37861 * 93.61467 * 20 18 17 22 22 H 1.09004 * 119.29784 * 111.30778 * 21 20 18 23 23 C 1.54752 * 118.23650 * 266.33556 * 21 20 18 24 24 H 1.08999 * 109.47030 * 57.85084 * 1 2 3 25 25 H 1.08998 * 109.47195 * 177.85221 * 1 2 3 26 26 H 1.09000 * 109.46810 * 297.84936 * 1 2 3 27 27 H 0.97002 * 119.99718 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00230 * 264.99570 * 12 2 1 29 29 H 1.08998 * 109.46941 * 59.29536 * 16 15 13 30 30 H 1.09001 * 109.46706 * 179.29392 * 16 15 13 31 31 H 1.09000 * 109.46916 * 299.29285 * 16 15 13 32 32 H 1.09002 * 110.48649 * 38.31069 * 17 15 13 33 33 H 1.09003 * 110.48816 * 160.81844 * 17 15 13 34 34 H 1.09004 * 117.46168 * 201.21596 * 20 18 17 35 35 H 1.09004 * 117.45773 * 346.01849 * 20 18 17 36 36 H 1.09004 * 110.49923 * 329.21630 * 23 21 20 37 37 H 1.08996 * 110.69308 * 206.42400 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6084 -1.6188 1.1321 6 6 1.7566 -0.2010 2.4816 7 7 1.1824 0.9762 2.6002 8 14 2.1985 -1.1828 4.0081 9 1 1.0168 -1.9642 4.4533 10 1 2.6148 -0.2549 5.0901 11 1 3.3153 -2.1099 3.6942 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6497 -0.7284 -3.5876 16 6 4.0460 -1.3053 -3.3457 17 6 2.6535 0.2247 -4.8085 18 6 1.1875 0.2306 -5.2885 19 1 0.6464 1.1754 -5.2373 20 6 0.7497 -0.8419 -6.2881 21 6 0.5563 -1.0810 -4.7894 22 1 -0.4532 -1.1038 -4.3788 23 6 1.6633 -1.8413 -4.0204 24 1 -0.3633 0.5468 -0.8701 25 1 -0.3633 -1.0269 -0.0385 26 1 -0.3633 0.4801 0.9087 27 1 0.9881 1.3345 3.4805 28 1 2.2490 -1.6317 -1.1528 29 1 4.0100 -2.0062 -2.5117 30 1 4.3848 -1.8245 -4.2422 31 1 4.7377 -0.4963 -3.1109 32 1 2.9609 1.2268 -4.5093 33 1 3.3112 -0.1578 -5.5891 34 1 -0.1405 -0.6402 -6.8840 35 1 1.5325 -1.4099 -6.7908 36 1 2.1597 -2.5576 -4.6751 37 1 1.2491 -2.3448 -3.1469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339503052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:52 Heat of formation + Delta-G solvation = -47.652903 kcal Electronic energy + Delta-G solvation = -17490.784430 eV Core-core repulsion = 14846.234177 eV Total energy + Delta-G solvation = -2644.550254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.61612 -39.22717 -36.64667 -34.76340 -33.96638 -30.79765 -29.11429 -27.85777 -27.33292 -24.55748 -22.43718 -21.98382 -20.67193 -20.44398 -18.51324 -17.55334 -17.15783 -16.72384 -16.01215 -15.83492 -15.04226 -14.56480 -14.39857 -14.22529 -13.75583 -13.69816 -13.43822 -13.10211 -12.95024 -12.92986 -12.70103 -12.59332 -12.36065 -12.23189 -12.13520 -11.65023 -11.60190 -11.15051 -10.95519 -10.73633 -10.59458 -10.29034 -9.71983 -8.20784 -6.35761 1.44055 1.44743 1.55892 1.89199 2.35647 2.63236 2.74697 3.11221 3.57124 3.65861 3.80897 4.09936 4.20279 4.34951 4.44343 4.50225 4.52639 4.70001 4.76278 4.85414 4.89450 4.94711 5.00405 5.01867 5.04869 5.18452 5.25657 5.29272 5.37580 5.41284 5.44874 5.61532 5.63061 5.90903 6.04390 6.73302 7.01865 7.31974 7.61649 8.88223 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042116 B = 0.006158 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.671687 B = 4546.205521 C = 4721.705021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.511 3.489 14 O -0.601 6.601 15 C -0.084 4.084 16 C -0.133 4.133 17 C -0.068 4.068 18 C -0.181 4.181 19 H 0.083 0.917 20 C -0.118 4.118 21 C -0.187 4.187 22 H 0.092 0.908 23 C -0.072 4.072 24 H 0.010 0.990 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -9.435 -14.919 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.167 3.833 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.184 1.184 12 N -0.352 5.352 13 C 0.299 3.701 14 O -0.483 6.483 15 C -0.087 4.087 16 C -0.190 4.190 17 C -0.105 4.105 18 C -0.199 4.199 19 H 0.101 0.899 20 C -0.154 4.154 21 C -0.205 4.205 22 H 0.110 0.890 23 C -0.109 4.109 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.716 -8.476 -14.781 17.254 hybrid contribution -0.223 0.140 1.396 1.421 sum 2.493 -8.336 -13.384 15.964 Atomic orbital electron populations 1.21811 0.98614 0.99210 0.98879 1.18295 0.90780 0.92006 0.82269 0.98624 1.21535 1.35408 1.10665 0.90785 0.90761 1.25846 0.94799 0.95509 1.02476 1.70133 1.43176 1.17852 1.24755 0.85325 0.78817 0.78249 0.77913 1.19757 1.21337 1.18398 1.46224 1.65303 1.14024 1.09661 1.21119 0.76812 0.86796 0.85390 1.90597 1.53073 1.18703 1.85910 1.22009 0.98076 0.96630 0.91957 1.21781 0.92312 1.00850 1.04064 1.21816 0.94909 0.98643 0.95174 1.23133 0.96715 0.93536 1.06554 0.89866 1.23143 1.03350 0.98941 0.90007 1.23375 0.99238 1.00213 0.97711 0.89021 1.22096 0.93470 0.95434 0.99947 0.97092 0.93568 0.92875 0.92590 0.76285 0.91481 0.88077 0.93298 0.93102 0.87766 0.87513 0.86553 0.86977 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 9.32 71.98 0.67 -5.88 16 2 C 0.27 14.44 2.45 44.25 0.11 14.54 16 3 H 0.00 -0.27 7.57 -2.39 -0.02 -0.29 16 4 C -0.55 -29.35 8.69 25.60 0.22 -29.13 16 5 H 0.07 3.71 7.73 -2.91 -0.02 3.68 16 6 C 0.01 0.75 5.21 84.66 0.44 1.19 16 7 N -0.92 -54.34 11.91 21.45 0.26 -54.09 16 8 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 N -0.70 -30.08 4.80 -446.09 -2.14 -32.22 16 13 C 0.51 21.18 6.19 87.66 0.54 21.72 16 14 O -0.60 -30.97 15.22 -3.03 -0.05 -31.01 16 15 C -0.08 -2.36 0.77 -51.64 -0.04 -2.40 16 16 C -0.13 -2.96 8.52 71.98 0.61 -2.35 16 17 C -0.07 -1.84 5.25 31.67 0.17 -1.67 16 18 C -0.18 -4.93 6.60 -10.07 -0.07 -5.00 16 19 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 20 C -0.12 -2.23 10.08 30.59 0.31 -1.92 16 21 C -0.19 -4.73 6.77 -9.90 -0.07 -4.80 16 22 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 23 C -0.07 -1.66 5.59 31.84 0.18 -1.48 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 2.98 6.59 -2.39 -0.02 2.97 16 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.40 14.50 7.79 -92.71 -0.72 13.78 16 29 H 0.07 1.45 7.61 -2.39 -0.02 1.43 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.68 7.43 -2.39 -0.02 1.66 16 33 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.11 1.79 8.05 -2.38 -0.02 1.77 16 37 H 0.07 1.69 7.70 -2.39 -0.02 1.67 16 Total: -1.00 -69.63 300.18 3.49 -66.13 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.32 Total: 24.00 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 3.08 Total: -17.18 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.89 Total: -86.31 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.05 Total: -31.01 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.63 3.49 -66.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339503052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.478 kcal (2) G-P(sol) polarization free energy of solvation -69.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds