Wall clock time and date at job start Mon Mar 30 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00115 * 2 1 4 4 O 1.21689 * 120.00025 * 180.02562 * 3 2 1 5 5 C 1.46373 * 120.00045 * 359.97438 * 3 2 1 6 6 H 1.07993 * 120.00048 * 0.02562 * 5 3 2 7 7 C 1.40047 * 120.00074 * 179.97438 * 5 3 2 8 8 N 1.30675 * 120.00159 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00284 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47383 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.46906 * 300.00799 * 9 7 5 12 12 H 1.48496 * 109.46983 * 60.00289 * 9 7 5 13 13 C 1.46498 * 119.99894 * 180.02562 * 2 1 3 14 14 H 1.09003 * 109.47383 * 160.95594 * 13 2 1 15 15 C 1.52996 * 109.47264 * 40.95373 * 13 2 1 16 16 C 1.53001 * 109.47600 * 240.00329 * 15 13 2 17 17 C 1.53008 * 109.46947 * 300.00214 * 16 15 13 18 18 C 1.52996 * 109.47146 * 59.99508 * 17 16 15 19 19 C 1.53004 * 109.47193 * 0.02562 * 18 17 16 20 20 C 1.52989 * 109.47477 * 59.99630 * 19 18 17 21 21 C 1.52996 * 109.46927 * 59.99711 * 16 15 13 22 22 H 1.08997 * 109.47003 * 84.34646 * 1 2 3 23 23 H 1.08994 * 109.47529 * 204.35289 * 1 2 3 24 24 H 1.08998 * 109.46993 * 324.35204 * 1 2 3 25 25 H 0.96993 * 120.00361 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.47314 * 0.02562 * 15 13 2 27 27 H 1.09003 * 109.47315 * 120.00256 * 15 13 2 28 28 H 1.09001 * 109.47562 * 180.02562 * 16 15 13 29 29 H 1.09003 * 109.46879 * 299.99405 * 17 16 15 30 30 H 1.09002 * 109.47032 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.47266 * 240.00340 * 18 17 16 32 32 H 1.08999 * 109.46992 * 119.99762 * 18 17 16 33 33 H 1.09000 * 109.46973 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.47646 * 59.99983 * 20 19 18 35 35 H 1.08998 * 109.47642 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.47128 * 60.00603 * 21 16 15 37 37 H 1.09007 * 109.47147 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1672 -0.0005 5 6 1.4071 2.4348 -0.0006 6 1 0.3271 2.4349 -0.0006 7 6 2.1073 3.6477 0.0000 8 7 3.4141 3.6477 0.0005 9 14 1.1734 5.2655 0.0000 10 1 2.1384 6.3941 0.0000 11 1 0.3200 5.3443 -1.2127 12 1 0.3193 5.3439 1.2122 13 6 2.1975 -1.2687 -0.0006 14 1 3.2204 -1.0976 -0.3358 15 6 1.5090 -2.2547 -0.9465 16 6 1.0675 -3.4914 -0.1612 17 6 2.2915 -4.1591 0.4690 18 6 2.9800 -3.1732 1.4149 19 6 2.2146 -1.8483 1.4158 20 6 0.7790 -2.0889 1.8866 21 6 0.0907 -3.0743 0.9400 22 1 -0.3633 0.1012 -1.0226 23 1 -0.3634 -0.9361 0.4237 24 1 -0.3633 0.8351 0.5989 25 1 3.8991 4.4876 0.0005 26 1 0.6373 -1.7789 -1.3957 27 1 2.2050 -2.5518 -1.7310 28 1 0.5775 -4.1940 -0.8352 29 1 2.9875 -4.4563 -0.3156 30 1 1.9769 -5.0399 1.0288 31 1 4.0029 -3.0020 1.0796 32 1 2.9924 -3.5859 2.4236 33 1 2.7054 -1.1457 2.0894 34 1 0.7917 -2.5018 2.8953 35 1 0.2337 -1.1451 1.8869 36 1 -0.7813 -2.5986 0.4911 37 1 -0.2235 -3.9553 1.4998 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382004521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:39 Heat of formation + Delta-G solvation = -44.175285 kcal Electronic energy + Delta-G solvation = -18068.441245 eV Core-core repulsion = 15424.041792 eV Total energy + Delta-G solvation = -2644.399453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45311 -36.97426 -33.64061 -32.41047 -31.03154 -30.76597 -29.45230 -26.03815 -25.45786 -22.28927 -21.82361 -21.56848 -19.14290 -16.61585 -16.16142 -16.08949 -15.85640 -15.50137 -14.88174 -13.90206 -13.56279 -13.18608 -12.63860 -12.18518 -11.87477 -11.82583 -11.73544 -11.68553 -11.54085 -11.40780 -11.27273 -11.08858 -10.91220 -10.74251 -10.38645 -10.22479 -10.09625 -9.61908 -9.56610 -9.36674 -8.80589 -7.50905 -7.06955 -6.14562 -4.59798 3.17092 3.22009 3.23725 4.11844 4.59183 4.60629 4.85822 4.96021 5.03764 5.53578 5.54260 5.63566 5.65301 5.66253 5.69441 5.74247 5.87408 5.88454 5.91012 6.05689 6.17366 6.20111 6.32687 6.41368 6.47435 6.48779 6.56542 6.64379 6.72123 6.78252 6.88802 6.95281 7.48017 7.74550 8.21358 8.45320 9.06525 9.51322 10.63269 10.82799 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045061 B = 0.007092 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.233148 B = 3947.174298 C = 4186.169120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.639 5.639 3 C 0.557 3.443 4 O -0.580 6.580 5 C -0.543 4.543 6 H 0.070 0.930 7 C 0.087 3.913 8 N -0.769 5.769 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.159 3.841 14 H 0.084 0.916 15 C -0.124 4.124 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.113 4.113 22 H 0.027 0.973 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.268 0.732 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 -11.929 1.411 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.376 5.376 3 C 0.363 3.637 4 O -0.463 6.463 5 C -0.580 4.580 6 H 0.088 0.912 7 C -0.132 4.132 8 N -0.397 5.397 9 Si 0.730 3.270 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.193 1.193 13 C 0.054 3.946 14 H 0.102 0.898 15 C -0.163 4.163 16 C -0.102 4.102 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.150 4.150 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.581 -11.801 1.403 13.129 hybrid contribution -0.566 0.828 -0.003 1.003 sum -6.146 -10.973 1.399 12.655 Atomic orbital electron populations 1.21722 0.82962 1.01448 0.99670 1.47977 1.04764 1.05018 1.79887 1.18226 0.86951 0.82338 0.76219 1.90583 1.14093 1.86362 1.55223 1.20981 0.93631 0.89362 1.54046 0.91177 1.25733 0.94584 1.00237 0.92662 1.70014 1.07038 1.27254 1.35435 0.86479 0.79868 0.81257 0.79409 1.20590 1.19316 1.19317 1.20537 0.97303 0.84084 0.92667 0.89781 1.21976 1.00933 0.95452 0.97893 1.21021 0.95838 0.96798 0.96556 1.21534 0.97000 0.97650 0.98658 1.21500 0.99144 0.95367 0.98897 1.21406 0.95341 0.95981 0.98709 1.21719 0.96607 0.99751 0.97705 1.21602 0.97853 0.98738 0.96843 0.95468 0.91736 0.91906 0.92145 0.91156 0.92251 0.91851 0.92328 0.92603 0.92079 0.92543 0.91146 0.93011 0.90504 0.91943 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 7.17 59.85 0.43 2.05 16 2 N -0.64 -14.62 2.69 -175.57 -0.47 -15.09 16 3 C 0.56 16.05 7.61 -12.99 -0.10 15.95 16 4 O -0.58 -18.97 14.45 5.20 0.08 -18.90 16 5 C -0.54 -15.47 8.73 -35.63 -0.31 -15.79 16 6 H 0.07 1.83 6.12 -52.49 -0.32 1.51 16 7 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 8 N -0.77 -23.31 11.83 55.55 0.66 -22.65 16 9 Si 0.91 20.34 29.56 -169.99 -5.02 15.32 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.16 3.17 2.56 -67.91 -0.17 2.99 16 14 H 0.08 1.95 7.12 -51.93 -0.37 1.58 16 15 C -0.12 -1.99 5.11 -26.73 -0.14 -2.13 16 16 C -0.08 -1.09 3.20 -90.62 -0.29 -1.38 16 17 C -0.11 -1.39 5.71 -26.73 -0.15 -1.54 16 18 C -0.11 -1.60 5.71 -26.73 -0.15 -1.75 16 19 C -0.09 -1.65 2.91 -90.60 -0.26 -1.91 16 20 C -0.12 -1.81 5.10 -26.74 -0.14 -1.95 16 21 C -0.11 -1.44 5.18 -26.73 -0.14 -1.58 16 22 H 0.03 0.49 7.91 -51.93 -0.41 0.08 16 23 H 0.06 1.02 2.75 -51.93 -0.14 0.87 16 24 H 0.06 1.23 6.43 -51.93 -0.33 0.89 16 25 H 0.27 7.39 8.29 -40.82 -0.34 7.06 16 26 H 0.07 1.14 6.32 -51.93 -0.33 0.82 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.26 5.28 -51.93 -0.27 0.98 16 36 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -33.12 274.42 -7.61 -40.73 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.46 Total: 1.11 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.52 Total: -4.66 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.19 Total: -37.75 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.08 Total: -18.90 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.12 -7.61 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382004521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.442 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds