Wall clock time and date at job start Mon Mar 30 2020 04:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00115 * 2 1 4 4 O 1.21689 * 120.00025 * 180.02562 * 3 2 1 5 5 C 1.46373 * 120.00045 * 359.97438 * 3 2 1 6 6 H 1.07993 * 120.00048 * 0.02562 * 5 3 2 7 7 C 1.40047 * 120.00074 * 179.97438 * 5 3 2 8 8 N 1.30675 * 120.00159 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00284 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47383 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.46906 * 300.00799 * 9 7 5 12 12 H 1.48496 * 109.46983 * 60.00289 * 9 7 5 13 13 C 1.46498 * 119.99894 * 180.02562 * 2 1 3 14 14 H 1.09003 * 109.47383 * 160.95594 * 13 2 1 15 15 C 1.52996 * 109.47264 * 40.95373 * 13 2 1 16 16 C 1.53001 * 109.47600 * 240.00329 * 15 13 2 17 17 C 1.53008 * 109.46947 * 300.00214 * 16 15 13 18 18 C 1.52996 * 109.47146 * 59.99508 * 17 16 15 19 19 C 1.53004 * 109.47193 * 0.02562 * 18 17 16 20 20 C 1.52989 * 109.47477 * 59.99630 * 19 18 17 21 21 C 1.52996 * 109.46927 * 59.99711 * 16 15 13 22 22 H 1.08997 * 109.47003 * 84.34646 * 1 2 3 23 23 H 1.08994 * 109.47529 * 204.35289 * 1 2 3 24 24 H 1.08998 * 109.46993 * 324.35204 * 1 2 3 25 25 H 0.96993 * 120.00361 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.47314 * 0.02562 * 15 13 2 27 27 H 1.09003 * 109.47315 * 120.00256 * 15 13 2 28 28 H 1.09001 * 109.47562 * 180.02562 * 16 15 13 29 29 H 1.09003 * 109.46879 * 299.99405 * 17 16 15 30 30 H 1.09002 * 109.47032 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.47266 * 240.00340 * 18 17 16 32 32 H 1.08999 * 109.46992 * 119.99762 * 18 17 16 33 33 H 1.09000 * 109.46973 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.47646 * 59.99983 * 20 19 18 35 35 H 1.08998 * 109.47642 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.47128 * 60.00603 * 21 16 15 37 37 H 1.09007 * 109.47147 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1672 -0.0005 5 6 1.4071 2.4348 -0.0006 6 1 0.3271 2.4349 -0.0006 7 6 2.1073 3.6477 0.0000 8 7 3.4141 3.6477 0.0005 9 14 1.1734 5.2655 0.0000 10 1 2.1384 6.3941 0.0000 11 1 0.3200 5.3443 -1.2127 12 1 0.3193 5.3439 1.2122 13 6 2.1975 -1.2687 -0.0006 14 1 3.2204 -1.0976 -0.3358 15 6 1.5090 -2.2547 -0.9465 16 6 1.0675 -3.4914 -0.1612 17 6 2.2915 -4.1591 0.4690 18 6 2.9800 -3.1732 1.4149 19 6 2.2146 -1.8483 1.4158 20 6 0.7790 -2.0889 1.8866 21 6 0.0907 -3.0743 0.9400 22 1 -0.3633 0.1012 -1.0226 23 1 -0.3634 -0.9361 0.4237 24 1 -0.3633 0.8351 0.5989 25 1 3.8991 4.4876 0.0005 26 1 0.6373 -1.7789 -1.3957 27 1 2.2050 -2.5518 -1.7310 28 1 0.5775 -4.1940 -0.8352 29 1 2.9875 -4.4563 -0.3156 30 1 1.9769 -5.0399 1.0288 31 1 4.0029 -3.0020 1.0796 32 1 2.9924 -3.5859 2.4236 33 1 2.7054 -1.1457 2.0894 34 1 0.7917 -2.5018 2.8953 35 1 0.2337 -1.1451 1.8869 36 1 -0.7813 -2.5986 0.4911 37 1 -0.2235 -3.9553 1.4998 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382004521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:39 Heat of formation + Delta-G solvation = -65.830573 kcal Electronic energy + Delta-G solvation = -18069.380289 eV Core-core repulsion = 15424.041792 eV Total energy + Delta-G solvation = -2645.338497 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81752 -38.96481 -35.51183 -34.60709 -32.26673 -31.95150 -30.95414 -28.13778 -27.11120 -23.49298 -23.35760 -22.82137 -20.98822 -18.53675 -17.79970 -17.52008 -17.34603 -16.93278 -16.56242 -15.66956 -15.13573 -14.89046 -14.09734 -13.90734 -13.43253 -13.12332 -13.05669 -12.98824 -12.91984 -12.87599 -12.82878 -12.69401 -12.62291 -12.47393 -12.07076 -11.95993 -11.53855 -10.94874 -10.82118 -10.79382 -10.65524 -9.75338 -8.96612 -8.28366 -6.84511 1.37254 1.41306 1.52736 2.23025 2.46062 2.89761 3.57465 3.70039 3.80195 3.84141 4.27524 4.36524 4.40777 4.43748 4.47622 4.51156 4.56223 4.59159 4.68953 4.74376 4.86317 4.91476 5.00058 5.14423 5.19112 5.22569 5.33840 5.36101 5.44679 5.49173 5.52933 5.53764 5.59991 5.82137 6.15967 6.50788 6.86977 7.46176 8.49181 8.68510 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045061 B = 0.007092 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.233148 B = 3947.174298 C = 4186.169120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.639 5.639 3 C 0.536 3.464 4 O -0.637 6.637 5 C -0.570 4.570 6 H 0.091 0.909 7 C 0.026 3.974 8 N -0.825 5.825 9 Si 0.996 3.004 10 H -0.275 1.275 11 H -0.253 1.253 12 H -0.253 1.253 13 C 0.152 3.848 14 H 0.032 0.968 15 C -0.118 4.118 16 C -0.078 4.078 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.109 4.109 22 H 0.037 0.963 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.273 0.727 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 -13.532 1.508 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.375 5.375 3 C 0.342 3.658 4 O -0.525 6.525 5 C -0.607 4.607 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.454 5.454 9 Si 0.815 3.185 10 H -0.199 1.199 11 H -0.177 1.177 12 H -0.177 1.177 13 C 0.048 3.952 14 H 0.051 0.949 15 C -0.156 4.156 16 C -0.097 4.097 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.113 4.113 20 C -0.155 4.155 21 C -0.146 4.146 22 H 0.055 0.945 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.765 -13.462 1.499 16.133 hybrid contribution 0.467 1.279 -0.023 1.362 sum -8.298 -12.183 1.476 14.814 Atomic orbital electron populations 1.21913 0.80204 1.03163 1.00439 1.47854 1.06565 1.04637 1.78411 1.18687 0.86614 0.84488 0.76026 1.90527 1.16481 1.87703 1.57748 1.21511 0.94787 0.89977 1.54388 0.89128 1.27038 0.95500 1.05058 0.91222 1.70207 1.09628 1.28852 1.36738 0.85099 0.78248 0.74757 0.80365 1.19941 1.17714 1.17706 1.20707 0.94950 0.84044 0.95488 0.94938 1.21930 1.00455 0.95902 0.97329 1.21058 0.96270 0.95485 0.96838 1.21547 0.96700 0.97683 0.98472 1.21493 0.98035 0.94307 1.00848 1.21317 0.97684 0.96488 0.95827 1.21695 0.94273 1.00010 0.99538 1.21619 0.97508 0.99176 0.96293 0.94475 0.88083 0.92740 0.91719 0.91049 0.92180 0.88556 0.91854 0.89526 0.93883 0.90673 0.95994 0.91266 0.92303 0.90986 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.16 7.17 127.77 0.92 4.07 16 2 N -0.64 -30.40 2.69 -827.62 -2.22 -32.63 16 3 C 0.54 32.69 7.61 86.36 0.66 33.35 16 4 O -0.64 -44.97 14.45 -4.31 -0.06 -45.03 16 5 C -0.57 -33.43 8.73 24.83 0.22 -33.21 16 6 H 0.09 4.74 6.12 -2.91 -0.02 4.73 16 7 C 0.03 1.52 5.50 85.30 0.47 1.99 16 8 N -0.82 -52.34 11.83 21.84 0.26 -52.09 16 9 Si 1.00 42.06 29.56 68.60 2.03 44.09 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 12 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 13 C 0.15 6.34 2.56 45.01 0.12 6.45 16 14 H 0.03 1.65 7.12 -2.39 -0.02 1.64 16 15 C -0.12 -3.64 5.11 30.59 0.16 -3.48 16 16 C -0.08 -1.73 3.20 -10.79 -0.03 -1.76 16 17 C -0.11 -2.30 5.71 30.60 0.17 -2.12 16 18 C -0.11 -3.06 5.71 30.59 0.17 -2.88 16 19 C -0.09 -3.33 2.91 -10.78 -0.03 -3.37 16 20 C -0.12 -3.31 5.10 30.59 0.16 -3.15 16 21 C -0.11 -2.28 5.18 30.59 0.16 -2.12 16 22 H 0.04 1.30 7.91 -2.39 -0.02 1.28 16 23 H 0.10 2.97 2.75 -2.39 -0.01 2.97 16 24 H 0.05 2.10 6.43 -2.39 -0.02 2.09 16 25 H 0.27 15.72 8.29 -92.71 -0.77 14.96 16 26 H 0.07 2.19 6.32 -2.39 -0.02 2.17 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.85 5.28 -2.39 -0.01 1.84 16 36 H 0.07 1.41 6.58 -2.38 -0.02 1.39 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -78.82 274.42 4.19 -74.63 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.06 Total: 17.26 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 3.13 Total: -6.23 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.97 Total: -84.71 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.06 Total: -45.03 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -78.82 4.19 -74.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382004521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.799 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds