Wall clock time and date at job start Mon Mar 30 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47518 * 2 1 4 4 C 1.50706 * 109.47225 * 119.99322 * 2 1 3 5 5 O 1.21279 * 119.99462 * 93.78002 * 4 2 1 6 6 N 1.34770 * 119.99998 * 273.78556 * 4 2 1 7 7 C 1.47421 * 125.65458 * 354.63659 * 6 4 2 8 8 C 1.54908 * 104.83584 * 155.91026 * 7 6 4 9 9 C 1.55154 * 101.58190 * 37.01263 * 8 7 6 10 10 H 1.08992 * 110.72180 * 83.03531 * 9 8 7 11 11 C 1.50699 * 110.71738 * 206.13709 * 9 8 7 12 12 H 1.07997 * 119.99983 * 116.15657 * 11 9 8 13 13 C 1.37879 * 120.00003 * 296.15157 * 11 9 8 14 14 N 1.31512 * 119.99917 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99921 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46918 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47363 * 60.00132 * 15 13 11 18 18 H 1.48504 * 109.47055 * 300.00066 * 15 13 11 19 19 C 1.47323 * 125.61220 * 174.86121 * 6 4 2 20 20 C 1.52998 * 109.47604 * 239.99445 * 2 1 3 21 21 C 1.52997 * 117.49837 * 128.62106 * 20 2 1 22 22 C 1.52998 * 60.00071 * 252.51528 * 21 20 2 23 23 H 1.09000 * 109.47103 * 304.75124 * 1 2 3 24 24 H 1.09003 * 109.46705 * 64.74846 * 1 2 3 25 25 H 1.09001 * 109.46886 * 184.74793 * 1 2 3 26 26 H 1.09000 * 110.36219 * 37.06802 * 7 6 4 27 27 H 1.08997 * 110.36395 * 274.75204 * 7 6 4 28 28 H 1.08999 * 111.00360 * 278.93458 * 8 7 6 29 29 H 1.08999 * 111.03718 * 155.10323 * 8 7 6 30 30 H 0.97000 * 120.00079 * 359.97438 * 14 13 11 31 31 H 1.09001 * 110.06443 * 61.68200 * 19 6 4 32 32 H 1.08992 * 109.85234 * 300.41738 * 19 6 4 33 33 H 1.08994 * 115.55253 * 274.33410 * 20 2 1 34 34 H 1.08997 * 117.50081 * 0.02562 * 21 20 2 35 35 H 1.09003 * 117.49914 * 145.02472 * 21 20 2 36 36 H 1.09000 * 117.50117 * 252.51274 * 22 21 20 37 37 H 1.09004 * 117.50051 * 107.49381 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.2998 -1.8922 1.1817 6 7 2.1844 -0.0321 2.3852 7 6 2.0052 1.4209 2.5584 8 6 1.6751 1.6037 4.0608 9 6 2.5846 0.5288 4.7125 10 1 3.5976 0.9088 4.8438 11 6 2.0126 0.0744 6.0306 12 1 1.6950 -0.9501 6.1570 13 6 1.8948 0.9665 7.0752 14 7 2.2811 2.2141 6.9211 15 14 1.1864 0.4031 8.7093 16 1 1.1665 1.5438 9.6598 17 1 2.0268 -0.6887 9.2631 18 1 -0.1980 -0.0935 8.5037 19 6 2.5617 -0.6201 3.6823 20 6 2.0401 -0.7213 -1.2491 21 6 3.0742 0.0050 -2.1115 22 6 1.6359 -0.1497 -2.6095 23 1 -0.3633 0.5858 0.8444 24 1 -0.3633 0.4384 -0.9295 25 1 -0.3633 -1.0242 0.0851 26 1 1.1795 1.7773 1.9424 27 1 2.9242 1.9493 2.3048 28 1 0.6232 1.3970 4.2577 29 1 1.9452 2.6030 4.4020 30 1 2.6493 2.5066 6.0727 31 1 3.5495 -1.0757 3.6131 32 1 1.8260 -1.3682 3.9775 33 1 2.1268 -1.8045 -1.1641 34 1 3.3915 0.9966 -1.7888 35 1 3.8417 -0.6003 -2.5940 36 1 1.4570 -0.8568 -3.4195 37 1 1.0065 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397667397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:46 Heat of formation + Delta-G solvation = -28.170723 kcal Electronic energy + Delta-G solvation = -17141.638250 eV Core-core repulsion = 14497.932807 eV Total energy + Delta-G solvation = -2643.705443 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86437 -37.71273 -36.55965 -33.41134 -32.11716 -29.90300 -28.50431 -25.34838 -24.22440 -22.71059 -22.36758 -20.70014 -19.79066 -18.59258 -17.31379 -16.67461 -15.90104 -15.31797 -14.49332 -14.37374 -14.08670 -13.77967 -13.11225 -12.82448 -12.47410 -12.27332 -12.22934 -11.86353 -11.73617 -11.51796 -11.38539 -10.98850 -10.90162 -10.73221 -10.42814 -10.15486 -10.07413 -9.96420 -9.77112 -9.29899 -8.61857 -8.45074 -8.08249 -6.42519 -4.16128 2.99297 3.40002 3.42140 3.43534 3.61138 3.76361 4.47582 4.56162 4.68440 4.84214 5.01315 5.23428 5.26184 5.38100 5.39792 5.45521 5.50849 5.65831 5.73563 5.76222 5.82432 5.84141 6.00617 6.06273 6.15799 6.17867 6.30162 6.49397 6.67709 6.75775 6.88091 7.06241 7.45525 8.05360 8.08645 8.34397 8.58079 8.78225 9.55142 10.95187 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.052097 B = 0.005231 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.329538 B = 5351.555214 C = 5458.612054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.087 0.913 4 C 0.529 3.471 5 O -0.553 6.553 6 N -0.612 5.612 7 C 0.094 3.906 8 C -0.125 4.125 9 C 0.027 3.973 10 H 0.031 0.969 11 C -0.594 4.594 12 H 0.052 0.948 13 C 0.023 3.977 14 N -0.910 5.910 15 Si 1.068 2.932 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.288 1.288 19 C 0.119 3.881 20 C -0.136 4.136 21 C -0.181 4.181 22 C -0.177 4.177 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.271 0.729 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 0.063 -14.519 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.105 0.895 4 C 0.317 3.683 5 O -0.432 6.432 6 N -0.344 5.344 7 C -0.029 4.029 8 C -0.163 4.163 9 C 0.008 3.992 10 H 0.050 0.950 11 C -0.633 4.633 12 H 0.071 0.929 13 C -0.181 4.181 14 N -0.546 5.546 15 Si 0.896 3.104 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.003 4.003 20 C -0.154 4.154 21 C -0.218 4.218 22 C -0.214 4.214 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.480 -0.084 -13.067 13.300 hybrid contribution 0.453 -0.431 -1.561 1.682 sum -2.027 -0.514 -14.628 14.777 Atomic orbital electron populations 1.21677 0.92430 1.02976 1.02364 1.20789 0.97536 0.99558 0.91877 0.89480 1.20092 0.77792 0.86920 0.83462 1.90632 1.51801 1.16095 1.84663 1.48785 1.67326 1.09201 1.09124 1.22484 0.99806 0.80735 0.99841 1.23002 1.01605 1.01211 0.90524 1.19879 0.95555 0.90489 0.93241 0.95048 1.21872 1.46050 0.98618 0.96730 0.92923 1.25794 0.95375 0.93952 1.02996 1.70830 1.38806 1.16512 1.28453 0.83546 0.76197 0.75468 0.75176 1.20756 1.21371 1.21422 1.22235 0.98843 0.97999 0.81204 1.22142 1.03224 1.00288 0.89796 1.23027 0.92548 1.01966 1.04258 1.22945 0.98055 1.03204 0.97227 0.91934 0.91500 0.91891 0.91837 0.92263 0.91411 0.90798 0.91712 0.93192 0.91913 0.86442 0.88880 0.88844 0.88796 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.07 37.16 0.34 -1.33 16 2 C -0.08 -1.05 2.19 -91.77 -0.20 -1.25 16 3 H 0.09 1.09 6.93 -51.93 -0.36 0.73 16 4 C 0.53 9.82 6.94 -10.99 -0.08 9.75 16 5 O -0.55 -12.08 16.15 5.56 0.09 -11.99 16 6 N -0.61 -11.84 3.33 -170.28 -0.57 -12.41 16 7 C 0.09 1.62 6.37 -2.53 -0.02 1.60 16 8 C -0.12 -2.62 5.77 -24.58 -0.14 -2.76 16 9 C 0.03 0.66 2.46 -89.94 -0.22 0.44 16 10 H 0.03 0.80 8.00 -51.93 -0.42 0.38 16 11 C -0.59 -16.05 8.48 -34.44 -0.29 -16.34 16 12 H 0.05 1.44 7.55 -52.49 -0.40 1.04 16 13 C 0.02 0.64 5.35 -17.82 -0.10 0.55 16 14 N -0.91 -25.90 13.45 55.43 0.75 -25.16 16 15 Si 1.07 24.37 29.90 -169.99 -5.08 19.28 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 C 0.12 2.63 6.48 -2.90 -0.02 2.61 16 20 C -0.14 -1.74 4.97 -90.62 -0.45 -2.19 16 21 C -0.18 -1.95 10.18 -26.73 -0.27 -2.22 16 22 C -0.18 -1.73 9.67 -26.73 -0.26 -1.99 16 23 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 24 H 0.07 0.65 7.13 -51.93 -0.37 0.28 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.92 6.78 -51.93 -0.35 0.57 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.50 8.04 -51.93 -0.42 1.09 16 29 H 0.07 1.58 6.61 -51.93 -0.34 1.23 16 30 H 0.27 7.51 5.45 -40.82 -0.22 7.29 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.47 7.64 -51.93 -0.40 1.08 16 33 H 0.12 1.72 7.33 -51.93 -0.38 1.34 16 34 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.82 7.59 -51.93 -0.39 0.43 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -30.15 297.44 -7.81 -37.96 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.77 Total: 0.97 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.71 Total: -13.14 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.18 Total: -37.57 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.15 -7.81 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.789 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds