Wall clock time and date at job start Mon Mar 30 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47518 * 2 1 4 4 C 1.50706 * 109.47225 * 119.99322 * 2 1 3 5 5 O 1.21279 * 119.99462 * 93.78002 * 4 2 1 6 6 N 1.34770 * 119.99998 * 273.78556 * 4 2 1 7 7 C 1.47421 * 125.65458 * 354.63659 * 6 4 2 8 8 C 1.54908 * 104.83584 * 155.91026 * 7 6 4 9 9 C 1.55154 * 101.58190 * 37.01263 * 8 7 6 10 10 H 1.08992 * 110.72180 * 83.03531 * 9 8 7 11 11 C 1.50699 * 110.71738 * 206.13709 * 9 8 7 12 12 H 1.07997 * 119.99983 * 116.15657 * 11 9 8 13 13 C 1.37879 * 120.00003 * 296.15157 * 11 9 8 14 14 N 1.31512 * 119.99917 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99921 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46918 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47363 * 60.00132 * 15 13 11 18 18 H 1.48504 * 109.47055 * 300.00066 * 15 13 11 19 19 C 1.47323 * 125.61220 * 174.86121 * 6 4 2 20 20 C 1.52998 * 109.47604 * 239.99445 * 2 1 3 21 21 C 1.52997 * 117.49837 * 128.62106 * 20 2 1 22 22 C 1.52998 * 60.00071 * 252.51528 * 21 20 2 23 23 H 1.09000 * 109.47103 * 304.75124 * 1 2 3 24 24 H 1.09003 * 109.46705 * 64.74846 * 1 2 3 25 25 H 1.09001 * 109.46886 * 184.74793 * 1 2 3 26 26 H 1.09000 * 110.36219 * 37.06802 * 7 6 4 27 27 H 1.08997 * 110.36395 * 274.75204 * 7 6 4 28 28 H 1.08999 * 111.00360 * 278.93458 * 8 7 6 29 29 H 1.08999 * 111.03718 * 155.10323 * 8 7 6 30 30 H 0.97000 * 120.00079 * 359.97438 * 14 13 11 31 31 H 1.09001 * 110.06443 * 61.68200 * 19 6 4 32 32 H 1.08992 * 109.85234 * 300.41738 * 19 6 4 33 33 H 1.08994 * 115.55253 * 274.33410 * 20 2 1 34 34 H 1.08997 * 117.50081 * 0.02562 * 21 20 2 35 35 H 1.09003 * 117.49914 * 145.02472 * 21 20 2 36 36 H 1.09000 * 117.50117 * 252.51274 * 22 21 20 37 37 H 1.09004 * 117.50051 * 107.49381 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.2998 -1.8922 1.1817 6 7 2.1844 -0.0321 2.3852 7 6 2.0052 1.4209 2.5584 8 6 1.6751 1.6037 4.0608 9 6 2.5846 0.5288 4.7125 10 1 3.5976 0.9088 4.8438 11 6 2.0126 0.0744 6.0306 12 1 1.6950 -0.9501 6.1570 13 6 1.8948 0.9665 7.0752 14 7 2.2811 2.2141 6.9211 15 14 1.1864 0.4031 8.7093 16 1 1.1665 1.5438 9.6598 17 1 2.0268 -0.6887 9.2631 18 1 -0.1980 -0.0935 8.5037 19 6 2.5617 -0.6201 3.6823 20 6 2.0401 -0.7213 -1.2491 21 6 3.0742 0.0050 -2.1115 22 6 1.6359 -0.1497 -2.6095 23 1 -0.3633 0.5858 0.8444 24 1 -0.3633 0.4384 -0.9295 25 1 -0.3633 -1.0242 0.0851 26 1 1.1795 1.7773 1.9424 27 1 2.9242 1.9493 2.3048 28 1 0.6232 1.3970 4.2577 29 1 1.9452 2.6030 4.4020 30 1 2.6493 2.5066 6.0727 31 1 3.5495 -1.0757 3.6131 32 1 1.8260 -1.3682 3.9775 33 1 2.1268 -1.8045 -1.1641 34 1 3.3915 0.9966 -1.7888 35 1 3.8417 -0.6003 -2.5940 36 1 1.4570 -0.8568 -3.4195 37 1 1.0065 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397667397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:46 Heat of formation + Delta-G solvation = -45.346608 kcal Electronic energy + Delta-G solvation = -17142.383052 eV Core-core repulsion = 14497.932807 eV Total energy + Delta-G solvation = -2644.450245 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31147 -39.04936 -37.92904 -35.31396 -33.32557 -31.58818 -30.19897 -26.85144 -25.80398 -24.24551 -23.14673 -22.10516 -21.40305 -19.91322 -19.11941 -18.24778 -17.40679 -16.72729 -15.93531 -15.66538 -15.41916 -15.28021 -14.58393 -14.27584 -14.05637 -13.78970 -13.65564 -13.35824 -12.99862 -12.96387 -12.73196 -12.51493 -12.29666 -11.94742 -11.90003 -11.75591 -11.66328 -11.30986 -10.98681 -10.76340 -10.60817 -10.49841 -9.70020 -8.59891 -6.34184 1.54707 1.55834 1.61695 1.81699 1.96574 2.57268 2.88670 3.18104 3.43493 3.64254 3.86593 3.96303 4.05418 4.12631 4.22348 4.25642 4.32583 4.43591 4.49020 4.54187 4.62150 4.76123 4.83974 4.86212 4.92593 5.01730 5.06467 5.17317 5.22893 5.24733 5.27319 5.34447 5.56052 6.03159 6.17439 6.55193 6.65082 7.08514 7.43318 8.79639 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.052097 B = 0.005231 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.329538 B = 5351.555214 C = 5458.612054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 H 0.110 0.890 4 C 0.523 3.477 5 O -0.594 6.594 6 N -0.616 5.616 7 C 0.104 3.896 8 C -0.116 4.116 9 C 0.020 3.980 10 H 0.013 0.987 11 C -0.613 4.613 12 H 0.040 0.960 13 C -0.018 4.018 14 N -0.930 5.930 15 Si 1.110 2.890 16 H -0.281 1.281 17 H -0.276 1.276 18 H -0.274 1.274 19 C 0.128 3.872 20 C -0.164 4.164 21 C -0.181 4.181 22 C -0.150 4.150 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.046 0.954 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.266 0.734 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 1.334 -16.293 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 H 0.128 0.872 4 C 0.313 3.687 5 O -0.475 6.475 6 N -0.348 5.348 7 C -0.017 4.017 8 C -0.154 4.154 9 C 0.001 3.999 10 H 0.031 0.969 11 C -0.651 4.651 12 H 0.059 0.941 13 C -0.218 4.218 14 N -0.567 5.567 15 Si 0.933 3.067 16 H -0.206 1.206 17 H -0.202 1.202 18 H -0.200 1.200 19 C 0.005 3.995 20 C -0.183 4.183 21 C -0.218 4.218 22 C -0.187 4.187 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.065 0.935 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.402 1.198 -14.874 15.305 hybrid contribution 0.787 -0.886 -1.037 1.575 sum -2.615 0.312 -15.911 16.127 Atomic orbital electron populations 1.21714 0.90978 1.02349 1.04129 1.20827 0.98494 0.99911 0.89329 0.87178 1.21137 0.76568 0.86677 0.84286 1.90609 1.53361 1.18183 1.85367 1.48875 1.67488 1.10128 1.08336 1.22539 1.02306 0.79468 0.97418 1.22772 0.99776 0.99649 0.93232 1.19814 0.94977 0.92126 0.92983 0.96886 1.22182 1.46171 0.98213 0.98533 0.94139 1.27029 0.95163 0.93614 1.06008 1.70917 1.40104 1.17227 1.28457 0.82993 0.76455 0.75415 0.71843 1.20631 1.20196 1.19956 1.21875 0.97782 0.97037 0.82831 1.22007 1.06362 0.98916 0.91034 1.23144 0.93233 1.02035 1.03408 1.23067 0.97274 1.03454 0.94918 0.91935 0.88174 0.93509 0.87918 0.90197 0.92890 0.91216 0.92264 0.94075 0.94046 0.89320 0.87884 0.88675 0.87679 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.07 71.98 0.65 -2.20 16 2 C -0.06 -1.62 2.19 -11.54 -0.03 -1.64 16 3 H 0.11 2.27 6.93 -2.39 -0.02 2.25 16 4 C 0.52 19.07 6.94 87.66 0.61 19.68 16 5 O -0.59 -26.51 16.15 -3.03 -0.05 -26.55 16 6 N -0.62 -23.45 3.33 -811.04 -2.70 -26.16 16 7 C 0.10 3.35 6.37 86.86 0.55 3.90 16 8 C -0.12 -4.82 5.77 31.98 0.18 -4.63 16 9 C 0.02 0.98 2.46 -10.35 -0.03 0.96 16 10 H 0.01 0.68 8.00 -2.39 -0.02 0.66 16 11 C -0.61 -33.87 8.48 25.60 0.22 -33.65 16 12 H 0.04 2.27 7.55 -2.91 -0.02 2.25 16 13 C -0.02 -1.01 5.35 84.66 0.45 -0.55 16 14 N -0.93 -53.34 13.45 21.45 0.29 -53.05 16 15 Si 1.11 49.06 29.90 68.60 2.05 51.11 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 C 0.13 5.83 6.48 86.67 0.56 6.39 16 20 C -0.16 -3.88 4.97 -10.80 -0.05 -3.93 16 21 C -0.18 -3.38 10.18 30.59 0.31 -3.07 16 22 C -0.15 -2.36 9.67 30.59 0.30 -2.07 16 23 H 0.06 1.33 7.53 -2.39 -0.02 1.31 16 24 H 0.10 1.48 7.13 -2.39 -0.02 1.46 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 2.55 6.78 -2.39 -0.02 2.53 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 2.34 8.04 -2.39 -0.02 2.32 16 29 H 0.07 2.95 6.61 -2.39 -0.02 2.94 16 30 H 0.27 14.97 5.45 -92.71 -0.50 14.46 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 2.03 7.64 -2.39 -0.02 2.01 16 33 H 0.09 2.61 7.33 -2.39 -0.02 2.60 16 34 H 0.10 1.72 8.05 -2.39 -0.02 1.71 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 1.37 7.59 -2.38 -0.02 1.35 16 Total: -1.00 -67.07 297.44 4.62 -62.45 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.30 Total: 13.03 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.73 Total: -20.82 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.41 Total: -79.21 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -67.07 4.62 -62.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.101 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds