Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.43694 * 2 1 4 4 C 1.51286 * 110.48566 * 122.53331 * 2 1 3 5 5 O 1.21283 * 124.93955 * 314.95512 * 4 2 1 6 6 N 1.34415 * 110.11808 * 134.93100 * 4 2 1 7 7 C 1.46502 * 124.34903 * 180.41311 * 6 4 2 8 8 C 1.52996 * 109.47351 * 88.79577 * 7 6 4 9 9 C 1.50695 * 115.55232 * 174.19532 * 8 7 6 10 10 H 1.08009 * 120.00178 * 212.47042 * 9 8 7 11 11 C 1.37881 * 119.99964 * 32.46624 * 9 8 7 12 12 N 1.31516 * 119.99773 * 196.66646 * 11 9 8 13 13 Si 1.86789 * 119.99965 * 16.66667 * 11 9 8 14 14 H 1.48503 * 109.47092 * 272.35747 * 13 11 9 15 15 H 1.48507 * 109.47145 * 32.35311 * 13 11 9 16 16 H 1.48501 * 109.47412 * 152.35536 * 13 11 9 17 17 C 1.53000 * 117.49874 * 319.86721 * 8 7 6 18 18 C 1.53003 * 117.50085 * 28.52315 * 8 7 6 19 19 C 1.46763 * 111.29904 * 0.67493 * 6 4 2 20 20 C 1.54625 * 110.48996 * 237.30809 * 2 1 3 21 21 H 1.08997 * 110.97304 * 98.40792 * 20 2 1 22 22 C 1.52999 * 110.96871 * 334.64559 * 20 2 1 23 23 H 1.08995 * 109.47425 * 303.77009 * 1 2 3 24 24 H 1.09006 * 109.46586 * 63.76349 * 1 2 3 25 25 H 1.08999 * 109.47320 * 183.76444 * 1 2 3 26 26 H 1.08992 * 109.47210 * 328.79420 * 7 6 4 27 27 H 1.09001 * 109.46841 * 208.79445 * 7 6 4 28 28 H 0.97004 * 119.99573 * 174.99389 * 12 11 9 29 29 H 1.09005 * 117.49888 * 215.00432 * 17 8 7 30 30 H 1.08999 * 117.49930 * 0.02562 * 17 8 7 31 31 H 1.09001 * 117.49781 * 359.97438 * 18 8 7 32 32 H 1.08996 * 117.50057 * 144.97257 * 18 8 7 33 33 H 1.08995 * 110.24686 * 101.72370 * 19 6 4 34 34 H 1.09002 * 110.24668 * 223.71961 * 19 6 4 35 35 H 1.09000 * 109.46867 * 66.42707 * 22 20 2 36 36 H 1.09003 * 109.47336 * 186.43153 * 22 20 2 37 37 H 1.09006 * 109.47465 * 306.42848 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0594 -0.7621 1.1948 5 8 1.6445 -0.6511 2.3290 6 7 3.0562 -1.5806 0.8164 7 6 3.7857 -2.4694 1.7242 8 6 3.0653 -3.8166 1.8071 9 6 3.7736 -4.8848 2.5998 10 1 3.6747 -5.9224 2.3168 11 6 4.5480 -4.5374 3.6865 12 7 5.4163 -5.3952 4.1762 13 14 4.3637 -2.8486 4.4630 14 1 5.2561 -1.8850 3.7699 15 1 2.9546 -2.3970 4.3372 16 1 4.7339 -2.9211 5.8993 17 6 1.5362 -3.7983 1.8552 18 6 2.2569 -4.2618 0.5868 19 6 3.3241 -1.4649 -0.6219 20 6 2.0712 -0.7823 -1.2190 21 1 2.3472 -0.1043 -2.0265 22 6 1.0535 -1.8183 -1.7005 23 1 -0.3634 0.5712 0.8542 24 1 -0.3633 0.4543 -0.9219 25 1 -0.3634 -1.0254 0.0675 26 1 3.8297 -2.0193 2.7159 27 1 4.7977 -2.6211 1.3488 28 1 6.0117 -5.1266 4.8933 29 1 1.0425 -4.5588 2.4602 30 1 1.0434 -2.8265 1.8273 31 1 2.2378 -3.5946 -0.2750 32 1 2.2377 -5.3271 0.3571 33 1 4.2087 -0.8515 -0.7927 34 1 3.4591 -2.4533 -1.0612 35 1 0.1752 -1.3082 -2.0960 36 1 1.5011 -2.4309 -2.4831 37 1 0.7591 -2.4540 -0.8654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399587622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = 1.558272 kcal Electronic energy + Delta-G solvation = -18240.728955 eV Core-core repulsion = 15598.312658 eV Total energy + Delta-G solvation = -2642.416297 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66863 -36.83506 -36.37010 -33.47155 -32.20269 -29.99494 -28.16126 -26.27845 -25.26644 -24.04533 -21.41584 -20.16692 -19.31027 -18.75434 -16.97207 -16.32877 -16.09341 -15.13991 -14.56166 -14.47544 -13.84578 -13.56290 -13.26899 -12.89698 -12.81135 -12.41252 -12.31676 -12.03417 -11.80676 -11.75961 -11.27938 -10.93717 -10.86786 -10.77868 -10.51499 -10.18575 -9.92458 -9.64491 -9.31738 -9.10683 -8.80593 -8.29541 -8.06646 -6.18420 -4.10035 2.99205 3.21787 3.34946 3.53329 3.58828 4.35873 4.38622 4.46577 4.74586 4.79047 5.00169 5.31709 5.36901 5.40501 5.45031 5.58047 5.67398 5.77436 5.82542 5.86858 5.90701 5.97372 6.02587 6.07482 6.16504 6.31769 6.42411 6.60364 6.61616 6.73426 7.02016 7.11469 7.26887 7.61380 7.73625 8.45606 8.63958 8.86241 9.45223 10.91955 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.009546 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.113544 B = 2932.333797 C = 3228.159441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 H 0.102 0.898 4 C 0.514 3.486 5 O -0.528 6.528 6 N -0.609 5.609 7 C 0.143 3.857 8 C -0.002 4.002 9 C -0.486 4.486 10 H 0.079 0.921 11 C 0.079 3.921 12 N -0.886 5.886 13 Si 0.873 3.127 14 H -0.281 1.281 15 H -0.249 1.249 16 H -0.295 1.295 17 C -0.205 4.205 18 C -0.194 4.194 19 C 0.099 3.901 20 C -0.099 4.099 21 H 0.093 0.907 22 C -0.149 4.149 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.267 0.733 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 10.592 -12.830 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.146 4.146 3 H 0.120 0.880 4 C 0.301 3.699 5 O -0.405 6.405 6 N -0.342 5.342 7 C 0.023 3.977 8 C -0.004 4.004 9 C -0.523 4.523 10 H 0.097 0.903 11 C -0.125 4.125 12 N -0.522 5.522 13 Si 0.703 3.297 14 H -0.209 1.209 15 H -0.174 1.174 16 H -0.223 1.223 17 C -0.243 4.243 18 C -0.232 4.232 19 C -0.024 4.024 20 C -0.118 4.118 21 H 0.111 0.889 22 C -0.206 4.206 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.869 10.513 -11.975 16.982 hybrid contribution 0.129 0.794 0.457 0.925 sum -5.741 11.307 -11.518 17.131 Atomic orbital electron populations 1.21650 0.92560 1.02921 1.01910 1.21995 0.98189 1.00146 0.94227 0.87995 1.20754 0.79719 0.79900 0.89572 1.90719 1.60999 1.66856 1.21932 1.48397 1.35797 1.40930 1.09036 1.21642 0.94848 0.88953 0.92232 1.19701 0.89646 0.93329 0.97701 1.20299 1.28496 0.92871 1.10684 0.90288 1.24972 0.94238 0.97047 0.96199 1.69897 1.19125 1.35770 1.27411 0.87178 0.80599 0.83997 0.77912 1.20880 1.17350 1.22306 1.23114 0.99310 1.00763 1.01072 1.22969 1.08525 0.99819 0.91851 1.22289 0.97192 1.01777 0.81127 1.22225 0.95330 0.97487 0.96785 0.88920 1.21946 0.98491 0.98516 1.01692 0.91968 0.91940 0.91803 0.90759 0.89893 0.92258 0.90286 0.90885 0.90210 0.90450 0.91379 0.89668 0.91997 0.92144 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 7.97 37.16 0.30 -1.27 16 2 C -0.12 -1.60 3.44 -90.63 -0.31 -1.92 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.51 9.60 5.89 -10.86 -0.06 9.53 16 5 O -0.53 -12.23 16.50 5.55 0.09 -12.14 16 6 N -0.61 -11.17 2.03 -172.30 -0.35 -11.52 16 7 C 0.14 3.22 4.58 -4.04 -0.02 3.20 16 8 C 0.00 -0.05 1.92 -155.66 -0.30 -0.34 16 9 C -0.49 -13.80 9.56 -34.44 -0.33 -14.13 16 10 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 11 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 12 N -0.89 -26.81 13.95 55.43 0.77 -26.04 16 13 Si 0.87 22.75 24.06 -169.99 -4.09 18.66 16 14 H -0.28 -6.97 6.76 56.52 0.38 -6.59 16 15 H -0.25 -6.79 6.99 56.52 0.40 -6.40 16 16 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 17 C -0.20 -4.71 9.63 -26.70 -0.26 -4.96 16 18 C -0.19 -4.02 9.52 -26.70 -0.25 -4.28 16 19 C 0.10 1.31 6.12 -3.03 -0.02 1.30 16 20 C -0.10 -1.06 3.65 -88.89 -0.32 -1.38 16 21 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -1.55 7.28 37.16 0.27 -1.28 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 25 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 26 H 0.07 1.85 2.63 -51.93 -0.14 1.72 16 27 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.27 7.59 8.32 -40.82 -0.34 7.25 16 29 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 30 H 0.07 1.68 5.38 -51.93 -0.28 1.40 16 31 H 0.08 1.40 3.16 -51.93 -0.16 1.24 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.12 6.51 -51.93 -0.34 0.78 16 35 H 0.06 0.54 7.16 -51.93 -0.37 0.17 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.89 6.18 -51.93 -0.32 0.57 16 LS Contribution 279.37 15.07 4.21 4.21 Total: -1.00 -32.74 279.37 -6.10 -38.84 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.33 Total: 1.33 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.41 Total: -13.33 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.42 Total: -37.56 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.09 Total: 18.66 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.74 -6.10 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399587622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.401 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds