Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.43694 * 2 1 4 4 C 1.51286 * 110.48566 * 122.53331 * 2 1 3 5 5 O 1.21283 * 124.93955 * 314.95512 * 4 2 1 6 6 N 1.34415 * 110.11808 * 134.93100 * 4 2 1 7 7 C 1.46502 * 124.34903 * 180.41311 * 6 4 2 8 8 C 1.52996 * 109.47351 * 88.79577 * 7 6 4 9 9 C 1.50695 * 115.55232 * 174.19532 * 8 7 6 10 10 H 1.08009 * 120.00178 * 212.47042 * 9 8 7 11 11 C 1.37881 * 119.99964 * 32.46624 * 9 8 7 12 12 N 1.31516 * 119.99773 * 196.66646 * 11 9 8 13 13 Si 1.86789 * 119.99965 * 16.66667 * 11 9 8 14 14 H 1.48503 * 109.47092 * 272.35747 * 13 11 9 15 15 H 1.48507 * 109.47145 * 32.35311 * 13 11 9 16 16 H 1.48501 * 109.47412 * 152.35536 * 13 11 9 17 17 C 1.53000 * 117.49874 * 319.86721 * 8 7 6 18 18 C 1.53003 * 117.50085 * 28.52315 * 8 7 6 19 19 C 1.46763 * 111.29904 * 0.67493 * 6 4 2 20 20 C 1.54625 * 110.48996 * 237.30809 * 2 1 3 21 21 H 1.08997 * 110.97304 * 98.40792 * 20 2 1 22 22 C 1.52999 * 110.96871 * 334.64559 * 20 2 1 23 23 H 1.08995 * 109.47425 * 303.77009 * 1 2 3 24 24 H 1.09006 * 109.46586 * 63.76349 * 1 2 3 25 25 H 1.08999 * 109.47320 * 183.76444 * 1 2 3 26 26 H 1.08992 * 109.47210 * 328.79420 * 7 6 4 27 27 H 1.09001 * 109.46841 * 208.79445 * 7 6 4 28 28 H 0.97004 * 119.99573 * 174.99389 * 12 11 9 29 29 H 1.09005 * 117.49888 * 215.00432 * 17 8 7 30 30 H 1.08999 * 117.49930 * 0.02562 * 17 8 7 31 31 H 1.09001 * 117.49781 * 359.97438 * 18 8 7 32 32 H 1.08996 * 117.50057 * 144.97257 * 18 8 7 33 33 H 1.08995 * 110.24686 * 101.72370 * 19 6 4 34 34 H 1.09002 * 110.24668 * 223.71961 * 19 6 4 35 35 H 1.09000 * 109.46867 * 66.42707 * 22 20 2 36 36 H 1.09003 * 109.47336 * 186.43153 * 22 20 2 37 37 H 1.09006 * 109.47465 * 306.42848 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0594 -0.7621 1.1948 5 8 1.6445 -0.6511 2.3290 6 7 3.0562 -1.5806 0.8164 7 6 3.7857 -2.4694 1.7242 8 6 3.0653 -3.8166 1.8071 9 6 3.7736 -4.8848 2.5998 10 1 3.6747 -5.9224 2.3168 11 6 4.5480 -4.5374 3.6865 12 7 5.4163 -5.3952 4.1762 13 14 4.3637 -2.8486 4.4630 14 1 5.2561 -1.8850 3.7699 15 1 2.9546 -2.3970 4.3372 16 1 4.7339 -2.9211 5.8993 17 6 1.5362 -3.7983 1.8552 18 6 2.2569 -4.2618 0.5868 19 6 3.3241 -1.4649 -0.6219 20 6 2.0712 -0.7823 -1.2190 21 1 2.3472 -0.1043 -2.0265 22 6 1.0535 -1.8183 -1.7005 23 1 -0.3634 0.5712 0.8542 24 1 -0.3633 0.4543 -0.9219 25 1 -0.3634 -1.0254 0.0675 26 1 3.8297 -2.0193 2.7159 27 1 4.7977 -2.6211 1.3488 28 1 6.0117 -5.1266 4.8933 29 1 1.0425 -4.5588 2.4602 30 1 1.0434 -2.8265 1.8273 31 1 2.2378 -3.5946 -0.2750 32 1 2.2377 -5.3271 0.3571 33 1 4.2087 -0.8515 -0.7927 34 1 3.4591 -2.4533 -1.0612 35 1 0.1752 -1.3082 -2.0960 36 1 1.5011 -2.4309 -2.4831 37 1 0.7591 -2.4540 -0.8654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399587622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = -20.191983 kcal Electronic energy + Delta-G solvation = -18241.672117 eV Core-core repulsion = 15598.312658 eV Total energy + Delta-G solvation = -2643.359459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97816 -38.59725 -37.69561 -34.85691 -34.36019 -30.98910 -29.69776 -27.95655 -26.53962 -25.38640 -23.17917 -21.35301 -21.04145 -20.24790 -18.69074 -17.96494 -17.56536 -16.57882 -16.32785 -15.54617 -15.45637 -14.89365 -14.71526 -14.70937 -14.19882 -13.89714 -13.88557 -13.33471 -13.02414 -12.84679 -12.65227 -12.60432 -12.39490 -12.11850 -11.86948 -11.74987 -11.61366 -11.47766 -11.20428 -10.74850 -10.61175 -10.33048 -9.59690 -8.45037 -6.38046 1.12141 1.26912 1.45716 1.60989 2.08700 2.19324 2.71907 3.31092 3.43566 3.50984 3.88598 4.02305 4.04723 4.13281 4.24760 4.43090 4.45924 4.56915 4.64247 4.64860 4.78509 4.86659 4.87228 4.91382 4.98341 5.00637 5.12838 5.17183 5.25636 5.30579 5.43733 5.49501 5.56829 5.69839 6.22178 6.26732 6.59195 7.19061 7.21918 8.69866 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033722 B = 0.009546 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.113544 B = 2932.333797 C = 3228.159441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 H 0.127 0.873 4 C 0.497 3.503 5 O -0.586 6.586 6 N -0.613 5.613 7 C 0.148 3.852 8 C -0.030 4.030 9 C -0.492 4.492 10 H 0.045 0.955 11 C 0.039 3.961 12 N -0.926 5.926 13 Si 0.935 3.065 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.295 1.295 17 C -0.207 4.207 18 C -0.158 4.158 19 C 0.087 3.913 20 C -0.083 4.083 21 H 0.139 0.861 22 C -0.152 4.152 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.272 0.728 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 12.878 -16.074 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.144 0.856 4 C 0.287 3.713 5 O -0.467 6.467 6 N -0.345 5.345 7 C 0.026 3.974 8 C -0.031 4.031 9 C -0.530 4.530 10 H 0.063 0.937 11 C -0.161 4.161 12 N -0.564 5.564 13 Si 0.765 3.235 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.223 1.223 17 C -0.245 4.245 18 C -0.195 4.195 19 C -0.034 4.034 20 C -0.101 4.101 21 H 0.157 0.843 22 C -0.209 4.209 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.249 12.805 -15.276 20.890 hybrid contribution 0.192 0.011 1.418 1.431 sum -6.057 12.816 -13.858 19.824 Atomic orbital electron populations 1.21673 0.91759 1.02144 1.03257 1.22086 0.98701 1.00672 0.92119 0.85562 1.21921 0.79108 0.79862 0.90434 1.90680 1.62594 1.68639 1.24783 1.48506 1.35329 1.39847 1.10842 1.21198 0.95466 0.88459 0.92278 1.19689 0.89909 0.93762 0.99775 1.20505 1.28639 0.92637 1.11207 0.93692 1.25518 0.94168 0.99875 0.96539 1.69980 1.20435 1.37497 1.28511 0.86179 0.79257 0.80984 0.77069 1.18757 1.20072 1.22311 1.22982 0.98199 1.00563 1.02726 1.23035 1.04304 1.00491 0.91692 1.22721 0.99799 1.02993 0.77880 1.22327 0.93598 0.97553 0.96646 0.84298 1.21991 0.99524 0.98474 1.00924 0.93547 0.88017 0.93297 0.93535 0.89284 0.91865 0.91848 0.90722 0.86514 0.90577 0.88778 0.89386 0.89821 0.90584 0.94622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 7.97 71.98 0.57 -2.08 16 2 C -0.11 -2.52 3.44 -10.80 -0.04 -2.55 16 3 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.50 17.82 5.89 87.90 0.52 18.34 16 5 O -0.59 -27.41 16.50 -3.04 -0.05 -27.46 16 6 N -0.61 -21.27 2.03 -817.64 -1.66 -22.94 16 7 C 0.15 6.56 4.58 86.38 0.40 6.95 16 8 C -0.03 -1.44 1.92 -52.93 -0.10 -1.54 16 9 C -0.49 -28.80 9.56 25.60 0.24 -28.55 16 10 H 0.04 2.86 8.06 -2.91 -0.02 2.84 16 11 C 0.04 2.34 5.39 84.66 0.46 2.79 16 12 N -0.93 -57.57 13.95 21.45 0.30 -57.27 16 13 Si 0.94 48.97 24.06 68.60 1.65 50.62 16 14 H -0.26 -12.65 6.76 99.48 0.67 -11.98 16 15 H -0.27 -15.40 6.99 99.48 0.70 -14.70 16 16 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 17 C -0.21 -9.62 9.63 30.62 0.29 -9.32 16 18 C -0.16 -6.38 9.52 30.62 0.29 -6.09 16 19 C 0.09 1.93 6.12 86.90 0.53 2.46 16 20 C -0.08 -1.30 3.65 -9.67 -0.04 -1.34 16 21 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 22 C -0.15 -2.42 7.28 71.98 0.52 -1.89 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.10 1.27 7.82 -2.38 -0.02 1.25 16 25 H 0.05 1.14 6.69 -2.39 -0.02 1.12 16 26 H 0.05 2.33 2.63 -2.39 -0.01 2.32 16 27 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.27 15.78 8.32 -92.70 -0.77 15.01 16 29 H 0.06 3.09 8.14 -2.38 -0.02 3.07 16 30 H 0.07 3.47 5.38 -2.39 -0.01 3.45 16 31 H 0.12 3.80 3.16 -2.39 -0.01 3.79 16 32 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.91 6.51 -2.39 -0.02 1.90 16 35 H 0.08 0.99 7.16 -2.39 -0.02 0.98 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.03 0.81 6.18 -2.38 -0.01 0.79 16 Total: -1.00 -75.66 279.37 4.91 -70.75 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.02 Total: 9.11 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 3.66 Total: -22.82 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.36 Total: -80.20 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.65 Total: 50.62 kcal Total: -75.66 4.91 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399587622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.560 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds