Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.86010 * 2 1 4 4 C 1.54663 * 111.22666 * 236.21261 * 2 1 3 5 5 N 1.46762 * 105.38443 * 267.58230 * 4 2 1 6 6 C 1.46497 * 124.35239 * 162.85342 * 5 4 2 7 7 C 1.53002 * 109.46961 * 268.97870 * 6 5 4 8 8 C 1.50703 * 115.54922 * 175.30573 * 7 6 5 9 9 H 1.08003 * 120.00023 * 219.67979 * 8 7 6 10 10 C 1.37871 * 120.00045 * 39.67409 * 8 7 6 11 11 N 1.31515 * 119.99982 * 356.35156 * 10 8 7 12 12 Si 1.86803 * 120.00239 * 176.07257 * 10 8 7 13 13 H 1.48503 * 109.46802 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46992 * 120.00046 * 12 10 8 15 15 H 1.48492 * 109.47499 * 240.00093 * 12 10 8 16 16 C 1.53000 * 117.52128 * 321.00924 * 7 6 5 17 17 C 1.52997 * 60.00049 * 107.48014 * 16 7 6 18 18 C 1.34420 * 111.29789 * 342.58824 * 5 4 2 19 19 O 1.21291 * 124.94245 * 180.69237 * 18 5 4 20 20 C 1.51278 * 110.12034 * 0.67128 * 18 5 4 21 21 H 1.09000 * 110.48603 * 135.06066 * 20 18 5 22 22 C 1.52995 * 110.48937 * 257.57775 * 20 18 5 23 23 H 1.08997 * 109.47201 * 301.59771 * 1 2 3 24 24 H 1.09004 * 109.47139 * 61.60017 * 1 2 3 25 25 H 1.08999 * 109.47207 * 181.59895 * 1 2 3 26 26 H 1.09001 * 110.39636 * 148.55448 * 4 2 1 27 27 H 1.08998 * 110.17711 * 26.49482 * 4 2 1 28 28 H 1.08995 * 109.47694 * 148.97986 * 6 5 4 29 29 H 1.09001 * 109.47091 * 28.97725 * 6 5 4 30 30 H 0.97001 * 120.00359 * 184.99467 * 11 10 8 31 31 H 1.08993 * 117.49814 * 214.97269 * 16 7 6 32 32 H 1.09005 * 117.49429 * 359.97438 * 16 7 6 33 33 H 1.09003 * 117.50208 * 252.51040 * 17 16 7 34 34 H 1.09008 * 117.51912 * 107.48209 * 17 16 7 35 35 H 1.08999 * 109.47254 * 58.54131 * 22 20 18 36 36 H 1.08997 * 109.47055 * 178.54691 * 22 20 18 37 37 H 1.09003 * 109.46697 * 298.54168 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0899 -0.8017 -1.1982 5 7 2.2865 -2.1666 -0.6957 6 6 2.4566 -3.3452 -1.5489 7 6 1.0903 -3.9760 -1.8254 8 6 1.0934 -5.1390 -2.7838 9 1 0.3000 -5.2430 -3.5092 10 6 2.1090 -6.0701 -2.7348 11 7 3.1124 -5.9054 -1.9007 12 14 2.0559 -7.5697 -3.8474 13 1 0.8283 -7.5238 -4.6817 14 1 3.2520 -7.5756 -4.7274 15 1 2.0456 -8.8014 -3.0180 16 6 0.0822 -4.0113 -0.6751 17 6 -0.1256 -3.0476 -1.8451 18 6 2.2963 -2.1953 0.6482 19 8 2.4533 -3.1925 1.3206 20 6 2.0834 -0.8030 1.2001 21 1 1.3597 -0.8222 2.0150 22 6 3.4095 -0.2074 1.6770 23 1 -0.3633 0.5384 0.8753 24 1 -0.3634 0.4888 -0.9040 25 1 -0.3633 -1.0272 0.0287 26 1 3.0400 -0.3802 -1.5266 27 1 1.3725 -0.8017 -2.0188 28 1 3.0959 -4.0697 -1.0447 29 1 2.9170 -3.0482 -2.4913 30 1 3.8622 -6.5206 -1.9164 31 1 -0.5788 -4.8756 -0.6115 32 1 0.3923 -3.5853 0.2792 33 1 0.0478 -1.9873 -1.6607 34 1 -0.9231 -3.2776 -2.5516 35 1 4.1143 -0.1779 0.8461 36 1 3.2413 0.8040 2.0470 37 1 3.8175 -0.8241 2.4779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399587628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = -12.850777 kcal Electronic energy + Delta-G solvation = -18020.172292 eV Core-core repulsion = 15377.131172 eV Total energy + Delta-G solvation = -2643.041120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29486 -36.46728 -36.04134 -32.81811 -32.12082 -30.45589 -26.99822 -25.88413 -25.41040 -23.52958 -21.24433 -20.19453 -19.48814 -18.27663 -16.47785 -15.76449 -15.48235 -14.95927 -14.51277 -13.86410 -13.79256 -13.33750 -13.01359 -12.83539 -12.56440 -12.26122 -11.98706 -11.69294 -11.67780 -11.37445 -11.00931 -10.93638 -10.79385 -10.60544 -10.53581 -10.25968 -9.98752 -9.64544 -9.07533 -8.81057 -8.72486 -8.05515 -7.70836 -6.01412 -4.11815 3.26117 3.33908 3.35137 3.38785 3.89669 4.36731 4.56997 4.69583 4.92674 5.05509 5.21224 5.46944 5.52689 5.58824 5.60737 5.76613 5.80321 5.95506 6.00811 6.05221 6.09811 6.20224 6.28641 6.43112 6.45693 6.57300 6.76664 6.98847 7.05348 7.27740 7.39716 7.48193 7.73785 7.90502 8.19037 8.41904 8.85561 9.03351 9.50677 10.97483 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037428 B = 0.007810 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.932294 B = 3584.339204 C = 3901.291481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.099 3.901 5 N -0.607 5.607 6 C 0.157 3.843 7 C 0.041 3.959 8 C -0.488 4.488 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.882 5.882 12 Si 0.900 3.100 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.198 4.198 17 C -0.219 4.219 18 C 0.515 3.485 19 O -0.529 6.529 20 C -0.127 4.127 21 H 0.097 0.903 22 C -0.131 4.131 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 13.081 2.422 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.025 4.025 5 N -0.340 5.340 6 C 0.038 3.962 7 C 0.039 3.961 8 C -0.526 4.526 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.519 5.519 12 Si 0.728 3.272 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.236 4.236 17 C -0.256 4.256 18 C 0.301 3.699 19 O -0.406 6.406 20 C -0.149 4.149 21 H 0.115 0.885 22 C -0.189 4.189 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.685 12.326 2.799 12.658 hybrid contribution -0.173 -0.723 -0.661 0.995 sum -0.858 11.602 2.137 11.828 Atomic orbital electron populations 1.21869 0.93970 1.03036 1.01634 1.22244 0.96490 0.98994 0.94259 0.89258 1.22218 1.00264 0.83120 0.96880 1.48704 1.70380 1.08157 1.06726 1.21648 0.98390 0.83263 0.92905 1.19400 0.86622 0.94534 0.95517 1.20608 1.09441 1.05966 1.16614 0.91965 1.25042 0.95537 0.97913 0.95060 1.69718 1.08497 1.37847 1.35875 0.86399 0.78000 0.82676 0.80145 1.19755 1.20889 1.20832 1.22919 1.07237 1.00322 0.93159 1.23074 1.04052 0.95602 1.02868 1.20541 0.76567 0.89833 0.82931 1.90716 1.50183 1.37060 1.62668 1.22077 0.99424 0.94765 0.98649 0.88510 1.21579 0.95410 1.00359 1.01540 0.92491 0.92181 0.91498 0.91955 0.90307 0.84913 0.92331 0.92591 0.91187 0.91148 0.90532 0.91343 0.92333 0.91969 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.53 37.16 0.32 -1.45 16 2 C -0.10 -1.24 3.27 -88.89 -0.29 -1.53 16 3 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 4 C 0.10 1.48 6.13 -3.02 -0.02 1.46 16 5 N -0.61 -12.05 2.05 -172.30 -0.35 -12.41 16 6 C 0.16 3.79 5.22 -4.04 -0.02 3.77 16 7 C 0.04 1.03 2.40 -155.66 -0.37 0.66 16 8 C -0.49 -13.47 9.03 -34.44 -0.31 -13.78 16 9 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 10 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 11 N -0.88 -25.00 10.48 55.43 0.58 -24.42 16 12 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.20 -4.89 9.62 -26.73 -0.26 -5.14 16 17 C -0.22 -4.81 9.50 -26.73 -0.25 -5.06 16 18 C 0.52 10.51 5.74 -10.86 -0.06 10.45 16 19 O -0.53 -13.34 16.76 5.55 0.09 -13.25 16 20 C -0.13 -1.86 3.08 -90.63 -0.28 -2.14 16 21 H 0.10 1.37 7.91 -51.93 -0.41 0.96 16 22 C -0.13 -1.61 9.17 37.16 0.34 -1.27 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.99 6.88 -51.93 -0.36 0.64 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.17 6.39 -51.93 -0.33 0.84 16 28 H 0.13 3.72 5.66 -51.93 -0.29 3.42 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 31 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.07 1.76 5.44 -51.93 -0.28 1.48 16 33 H 0.08 1.47 3.22 -51.93 -0.17 1.31 16 34 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -30.83 290.04 -7.24 -38.07 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.60 Total: 3.82 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.30 Total: -12.31 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.23 Total: -36.83 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.83 -7.24 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399587628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.215 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds