Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.86010 * 2 1 4 4 C 1.54663 * 111.22666 * 236.21261 * 2 1 3 5 5 N 1.46762 * 105.38443 * 267.58230 * 4 2 1 6 6 C 1.46497 * 124.35239 * 162.85342 * 5 4 2 7 7 C 1.53002 * 109.46961 * 268.97870 * 6 5 4 8 8 C 1.50703 * 115.54922 * 175.30573 * 7 6 5 9 9 H 1.08003 * 120.00023 * 219.67979 * 8 7 6 10 10 C 1.37871 * 120.00045 * 39.67409 * 8 7 6 11 11 N 1.31515 * 119.99982 * 356.35156 * 10 8 7 12 12 Si 1.86803 * 120.00239 * 176.07257 * 10 8 7 13 13 H 1.48503 * 109.46802 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46992 * 120.00046 * 12 10 8 15 15 H 1.48492 * 109.47499 * 240.00093 * 12 10 8 16 16 C 1.53000 * 117.52128 * 321.00924 * 7 6 5 17 17 C 1.52997 * 60.00049 * 107.48014 * 16 7 6 18 18 C 1.34420 * 111.29789 * 342.58824 * 5 4 2 19 19 O 1.21291 * 124.94245 * 180.69237 * 18 5 4 20 20 C 1.51278 * 110.12034 * 0.67128 * 18 5 4 21 21 H 1.09000 * 110.48603 * 135.06066 * 20 18 5 22 22 C 1.52995 * 110.48937 * 257.57775 * 20 18 5 23 23 H 1.08997 * 109.47201 * 301.59771 * 1 2 3 24 24 H 1.09004 * 109.47139 * 61.60017 * 1 2 3 25 25 H 1.08999 * 109.47207 * 181.59895 * 1 2 3 26 26 H 1.09001 * 110.39636 * 148.55448 * 4 2 1 27 27 H 1.08998 * 110.17711 * 26.49482 * 4 2 1 28 28 H 1.08995 * 109.47694 * 148.97986 * 6 5 4 29 29 H 1.09001 * 109.47091 * 28.97725 * 6 5 4 30 30 H 0.97001 * 120.00359 * 184.99467 * 11 10 8 31 31 H 1.08993 * 117.49814 * 214.97269 * 16 7 6 32 32 H 1.09005 * 117.49429 * 359.97438 * 16 7 6 33 33 H 1.09003 * 117.50208 * 252.51040 * 17 16 7 34 34 H 1.09008 * 117.51912 * 107.48209 * 17 16 7 35 35 H 1.08999 * 109.47254 * 58.54131 * 22 20 18 36 36 H 1.08997 * 109.47055 * 178.54691 * 22 20 18 37 37 H 1.09003 * 109.46697 * 298.54168 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0899 -0.8017 -1.1982 5 7 2.2865 -2.1666 -0.6957 6 6 2.4566 -3.3452 -1.5489 7 6 1.0903 -3.9760 -1.8254 8 6 1.0934 -5.1390 -2.7838 9 1 0.3000 -5.2430 -3.5092 10 6 2.1090 -6.0701 -2.7348 11 7 3.1124 -5.9054 -1.9007 12 14 2.0559 -7.5697 -3.8474 13 1 0.8283 -7.5238 -4.6817 14 1 3.2520 -7.5756 -4.7274 15 1 2.0456 -8.8014 -3.0180 16 6 0.0822 -4.0113 -0.6751 17 6 -0.1256 -3.0476 -1.8451 18 6 2.2963 -2.1953 0.6482 19 8 2.4533 -3.1925 1.3206 20 6 2.0834 -0.8030 1.2001 21 1 1.3597 -0.8222 2.0150 22 6 3.4095 -0.2074 1.6770 23 1 -0.3633 0.5384 0.8753 24 1 -0.3634 0.4888 -0.9040 25 1 -0.3633 -1.0272 0.0287 26 1 3.0400 -0.3802 -1.5266 27 1 1.3725 -0.8017 -2.0188 28 1 3.0959 -4.0697 -1.0447 29 1 2.9170 -3.0482 -2.4913 30 1 3.8622 -6.5206 -1.9164 31 1 -0.5788 -4.8756 -0.6115 32 1 0.3923 -3.5853 0.2792 33 1 0.0478 -1.9873 -1.6607 34 1 -0.9231 -3.2776 -2.5516 35 1 4.1143 -0.1779 0.8461 36 1 3.2413 0.8040 2.0470 37 1 3.8175 -0.8241 2.4779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399587628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = -31.115143 kcal Electronic energy + Delta-G solvation = -18020.964295 eV Core-core repulsion = 15377.131172 eV Total energy + Delta-G solvation = -2643.833123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75534 -38.33336 -37.55777 -34.41347 -34.08124 -31.51025 -28.64269 -27.62073 -26.98524 -24.79447 -23.06541 -21.44252 -21.25452 -19.96361 -18.41098 -17.35368 -17.05139 -16.56345 -16.26942 -15.43542 -15.11258 -14.59858 -14.54371 -14.31276 -13.99341 -13.64847 -13.46327 -13.38428 -13.07519 -12.89121 -12.65267 -12.53803 -12.39267 -12.05599 -12.03570 -11.72345 -11.55807 -11.41686 -10.99152 -10.74954 -10.44058 -10.05098 -9.37849 -8.08246 -6.28223 1.38488 1.41318 1.52938 1.78713 2.32522 2.42892 2.99546 3.44886 3.52245 3.59355 3.91799 4.11759 4.28907 4.41983 4.50437 4.57050 4.57600 4.62622 4.71049 4.84425 4.91374 4.96357 4.99740 5.08404 5.09548 5.15397 5.19321 5.29181 5.34467 5.49371 5.51277 5.54046 5.87296 5.96630 6.34591 6.54782 6.77217 7.36516 7.43599 8.87965 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037428 B = 0.007810 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.932294 B = 3584.339204 C = 3901.291481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.136 0.864 4 C 0.089 3.911 5 N -0.611 5.611 6 C 0.171 3.829 7 C 0.011 3.989 8 C -0.512 4.512 9 H 0.058 0.942 10 C 0.019 3.981 11 N -0.909 5.909 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.272 1.272 15 H -0.286 1.286 16 C -0.209 4.209 17 C -0.181 4.181 18 C 0.498 3.502 19 O -0.594 6.594 20 C -0.118 4.118 21 H 0.103 0.897 22 C -0.127 4.127 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 15.936 1.728 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.154 0.846 4 C -0.033 4.033 5 N -0.342 5.342 6 C 0.050 3.950 7 C 0.009 3.991 8 C -0.549 4.549 9 H 0.076 0.924 10 C -0.180 4.180 11 N -0.547 5.547 12 Si 0.790 3.210 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.212 1.212 16 C -0.247 4.247 17 C -0.218 4.218 18 C 0.287 3.713 19 O -0.475 6.475 20 C -0.139 4.139 21 H 0.121 0.879 22 C -0.185 4.185 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.273 15.236 2.082 15.430 hybrid contribution -0.005 -1.597 -0.426 1.653 sum -1.278 13.639 1.655 13.798 Atomic orbital electron populations 1.21903 0.93569 1.01352 1.03780 1.22332 0.96695 1.00233 0.90981 0.84640 1.22603 1.01958 0.80580 0.98195 1.48721 1.69766 1.09121 1.06601 1.21011 0.97009 0.84368 0.92619 1.19538 0.88137 0.95694 0.95706 1.20918 1.09555 1.07326 1.17141 0.92366 1.25841 0.95153 1.00535 0.96515 1.69943 1.08972 1.38620 1.37134 0.85393 0.78473 0.78728 0.78370 1.19000 1.19768 1.21188 1.22787 1.07352 1.01055 0.93485 1.23098 1.01798 0.96525 1.00358 1.21697 0.75105 0.91613 0.82887 1.90665 1.52873 1.39959 1.64020 1.22108 1.01164 0.90985 0.99651 0.87867 1.21613 0.93793 1.02004 1.01061 0.90238 0.90265 0.95001 0.89642 0.89922 0.89270 0.92677 0.92745 0.92748 0.91928 0.87449 0.90777 0.92282 0.87835 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.53 71.98 0.61 -2.33 16 2 C -0.08 -1.70 3.27 -9.67 -0.03 -1.73 16 3 H 0.14 1.65 7.90 -2.39 -0.02 1.63 16 4 C 0.09 2.38 6.13 86.90 0.53 2.91 16 5 N -0.61 -24.17 2.05 -817.63 -1.68 -25.85 16 6 C 0.17 8.53 5.22 86.38 0.45 8.98 16 7 C 0.01 0.55 2.40 -52.93 -0.13 0.42 16 8 C -0.51 -28.84 9.03 25.60 0.23 -28.60 16 9 H 0.06 3.22 7.82 -2.91 -0.02 3.20 16 10 C 0.02 1.08 5.39 84.65 0.46 1.54 16 11 N -0.91 -53.56 10.48 21.44 0.22 -53.33 16 12 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 C -0.21 -10.58 9.62 30.59 0.29 -10.28 16 17 C -0.18 -7.83 9.50 30.59 0.29 -7.54 16 18 C 0.50 20.54 5.74 87.90 0.50 21.04 16 19 O -0.59 -31.49 16.76 -3.06 -0.05 -31.54 16 20 C -0.12 -3.16 3.08 -10.80 -0.03 -3.19 16 21 H 0.10 2.67 7.91 -2.39 -0.02 2.66 16 22 C -0.13 -2.73 9.17 71.98 0.66 -2.07 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.03 0.86 6.88 -2.39 -0.02 0.84 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.17 6.39 -2.39 -0.02 2.16 16 28 H 0.09 5.29 5.66 -2.39 -0.01 5.27 16 29 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.26 14.73 8.32 -92.71 -0.77 13.96 16 31 H 0.05 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 3.25 5.44 -2.38 -0.01 3.24 16 33 H 0.11 3.92 3.22 -2.39 -0.01 3.91 16 34 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -71.84 290.04 5.41 -66.43 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.05 Total: 18.98 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 3.84 Total: -20.85 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.45 Total: -79.18 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.54 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.84 5.41 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399587628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.311 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds