Wall clock time and date at job start Mon Mar 30 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99952 * 2 1 4 4 C 1.50697 * 109.47390 * 270.00328 * 3 2 1 5 5 H 1.08000 * 119.99650 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00255 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00267 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99708 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47246 * 90.00180 * 8 6 4 10 10 H 1.48498 * 109.47012 * 210.00488 * 8 6 4 11 11 H 1.48506 * 109.47068 * 330.00354 * 8 6 4 12 12 C 1.34779 * 120.00425 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00074 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99553 * 359.97438 * 12 2 1 15 15 H 1.08997 * 109.76850 * 60.45800 * 14 12 2 16 16 C 1.53301 * 109.61979 * 300.00303 * 14 12 2 17 17 C 1.52874 * 108.73970 * 165.74174 * 16 14 12 18 18 C 1.52464 * 110.30749 * 54.80673 * 17 16 14 19 19 H 1.08998 * 114.23233 * 193.83515 * 18 17 16 20 20 C 1.52306 * 119.81416 * 49.71227 * 18 17 16 21 21 C 1.52071 * 120.09482 * 338.44216 * 18 17 16 22 22 H 1.09005 * 117.24979 * 215.50270 * 21 18 17 23 23 C 1.52702 * 120.52664 * 5.22855 * 21 18 17 24 24 H 1.08992 * 109.47124 * 269.99713 * 1 2 3 25 25 H 1.09004 * 109.46885 * 30.00299 * 1 2 3 26 26 H 1.09002 * 109.46842 * 149.99442 * 1 2 3 27 27 H 1.09006 * 109.46627 * 30.00589 * 3 2 1 28 28 H 1.09002 * 109.46949 * 149.99560 * 3 2 1 29 29 H 0.97002 * 120.00057 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.61801 * 285.56333 * 16 14 12 31 31 H 1.08998 * 109.61633 * 45.92285 * 16 14 12 32 32 H 1.09002 * 109.26482 * 175.24371 * 17 16 14 33 33 H 1.09001 * 109.26608 * 294.70574 * 17 16 14 34 34 H 1.09000 * 117.53727 * 142.70121 * 20 18 17 35 35 H 1.09003 * 117.54207 * 357.45932 * 20 18 17 36 36 H 1.08996 * 109.35780 * 218.32060 * 23 21 18 37 37 H 1.08999 * 109.35913 * 98.73191 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1269 2.8776 -1.6727 7 7 3.3465 3.2571 -2.9125 8 14 3.7338 3.9288 -0.2528 9 1 5.1069 3.5070 0.1238 10 1 3.7497 5.3554 -0.6645 11 1 2.8273 3.7595 0.9113 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.7628 -2.5385 -0.8927 16 6 0.5033 -2.5573 1.2503 17 6 -0.5038 -3.6924 1.0648 18 6 0.2201 -4.9940 0.7388 19 1 -0.4290 -5.7848 0.3627 20 6 1.3893 -5.4473 1.6032 21 6 1.6282 -4.9605 0.1656 22 1 1.8876 -5.7256 -0.5662 23 6 2.3758 -3.6368 0.0218 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5140 28 1 3.1499 1.1384 0.5139 29 1 3.8233 4.0830 -3.0898 30 1 1.1244 -2.7582 2.1233 31 1 -0.0280 -1.6156 1.3881 32 1 -1.0795 -3.8159 1.9821 33 1 -1.1802 -3.4431 0.2472 34 1 1.4886 -6.5154 1.7967 35 1 1.6996 -4.7905 2.4159 36 1 2.9468 -3.6433 -0.9066 37 1 3.0586 -3.5142 0.8626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403530732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:26 Heat of formation + Delta-G solvation = -17.636562 kcal Electronic energy + Delta-G solvation = -17369.926043 eV Core-core repulsion = 14726.677396 eV Total energy + Delta-G solvation = -2643.248647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19743 -38.25142 -34.98370 -33.31694 -32.27108 -30.71924 -28.50593 -26.08700 -24.93712 -23.46242 -21.80109 -21.11769 -18.83690 -18.18601 -16.90818 -16.44285 -16.08819 -15.30279 -14.77353 -14.14224 -13.92311 -13.56164 -13.52436 -13.17570 -12.51498 -12.32220 -12.24306 -12.01598 -11.89393 -11.47885 -11.36264 -11.11185 -10.98075 -10.82874 -10.50225 -10.37103 -10.11342 -9.75394 -9.66087 -9.51994 -8.85424 -8.57471 -7.66346 -6.07224 -4.05791 3.30244 3.36226 3.38003 3.39953 3.67407 3.90627 4.40976 4.59021 4.72782 4.78576 4.95820 5.10135 5.12738 5.24328 5.30298 5.46492 5.53435 5.57940 5.69568 5.73292 5.78318 5.86626 5.93428 6.04006 6.10262 6.14548 6.19162 6.31022 6.41855 6.47862 6.72738 6.97214 7.37547 7.63095 8.29399 8.49130 8.95146 9.03736 9.53311 11.06282 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046232 B = 0.005903 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.500394 B = 4742.331624 C = 4895.168550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.511 3.489 13 O -0.542 6.542 14 C -0.103 4.103 15 H 0.094 0.906 16 C -0.127 4.127 17 C -0.085 4.085 18 C -0.141 4.141 19 H 0.095 0.905 20 C -0.186 4.186 21 C -0.144 4.144 22 H 0.101 0.899 23 C -0.069 4.069 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -14.020 9.028 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.298 3.702 13 O -0.419 6.419 14 C -0.125 4.125 15 H 0.112 0.888 16 C -0.164 4.164 17 C -0.122 4.122 18 C -0.159 4.159 19 H 0.114 0.886 20 C -0.223 4.223 21 C -0.162 4.162 22 H 0.119 0.881 23 C -0.107 4.107 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.547 -13.846 8.923 18.557 hybrid contribution 0.293 0.599 0.464 0.812 sum -8.253 -13.247 9.387 18.213 Atomic orbital electron populations 1.21788 0.81235 1.02958 1.00130 1.47815 1.06140 1.07124 1.71881 1.19657 0.92460 0.80187 0.98309 1.21340 1.36892 1.07103 0.91311 0.90813 1.24862 0.95244 0.97367 0.95574 1.69898 1.41549 1.23579 1.18665 0.86839 0.80127 0.79714 0.82934 1.19915 1.21074 1.19091 1.20376 0.87964 0.85038 0.76861 1.90651 1.14040 1.87248 1.49977 1.21296 0.97866 0.93296 1.00000 0.88763 1.21887 0.97685 0.99727 0.97108 1.20915 0.97259 0.92495 1.01580 1.21890 0.90809 0.99268 1.03971 0.88633 1.23131 1.03652 1.00933 0.94570 1.22278 0.98197 0.99227 0.96480 0.88111 1.20817 0.96266 0.89976 1.03596 0.93408 0.90776 0.91893 0.95306 0.94618 0.92583 0.91594 0.89913 0.91421 0.91279 0.89292 0.88754 0.90909 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 8.82 59.85 0.53 1.80 16 2 N -0.60 -12.47 2.86 -182.95 -0.52 -12.99 16 3 C 0.21 5.34 4.23 -5.19 -0.02 5.32 16 4 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 8 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 12 C 0.51 10.59 7.08 -10.98 -0.08 10.51 16 13 O -0.54 -13.62 15.50 5.56 0.09 -13.53 16 14 C -0.10 -1.56 1.68 -91.68 -0.15 -1.71 16 15 H 0.09 1.35 7.34 -51.93 -0.38 0.97 16 16 C -0.13 -1.53 4.59 -26.64 -0.12 -1.65 16 17 C -0.09 -0.82 5.97 -27.07 -0.16 -0.99 16 18 C -0.14 -1.40 6.01 -91.72 -0.55 -1.96 16 19 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 20 C -0.19 -1.89 9.66 -26.75 -0.26 -2.14 16 21 C -0.14 -1.64 6.19 -90.91 -0.56 -2.20 16 22 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 23 C -0.07 -1.00 4.48 -26.94 -0.12 -1.12 16 24 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.82 6.15 -51.93 -0.32 0.50 16 27 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 28 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.07 0.83 7.11 -51.93 -0.37 0.46 16 31 H 0.08 0.97 4.50 -51.93 -0.23 0.73 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.00 7.26 -51.93 -0.38 0.63 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -33.64 288.89 -7.63 -41.27 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.71 Total: -1.14 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.94 Total: -7.87 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.25 Total: -40.24 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.64 -7.63 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403530732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.635 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds