Wall clock time and date at job start Mon Mar 30 2020 04:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99952 * 2 1 4 4 C 1.50697 * 109.47390 * 270.00328 * 3 2 1 5 5 H 1.08000 * 119.99650 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00255 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00267 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99708 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47246 * 90.00180 * 8 6 4 10 10 H 1.48498 * 109.47012 * 210.00488 * 8 6 4 11 11 H 1.48506 * 109.47068 * 330.00354 * 8 6 4 12 12 C 1.34779 * 120.00425 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00074 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99553 * 359.97438 * 12 2 1 15 15 H 1.08997 * 109.76850 * 60.45800 * 14 12 2 16 16 C 1.53301 * 109.61979 * 300.00303 * 14 12 2 17 17 C 1.52874 * 108.73970 * 165.74174 * 16 14 12 18 18 C 1.52464 * 110.30749 * 54.80673 * 17 16 14 19 19 H 1.08998 * 114.23233 * 193.83515 * 18 17 16 20 20 C 1.52306 * 119.81416 * 49.71227 * 18 17 16 21 21 C 1.52071 * 120.09482 * 338.44216 * 18 17 16 22 22 H 1.09005 * 117.24979 * 215.50270 * 21 18 17 23 23 C 1.52702 * 120.52664 * 5.22855 * 21 18 17 24 24 H 1.08992 * 109.47124 * 269.99713 * 1 2 3 25 25 H 1.09004 * 109.46885 * 30.00299 * 1 2 3 26 26 H 1.09002 * 109.46842 * 149.99442 * 1 2 3 27 27 H 1.09006 * 109.46627 * 30.00589 * 3 2 1 28 28 H 1.09002 * 109.46949 * 149.99560 * 3 2 1 29 29 H 0.97002 * 120.00057 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.61801 * 285.56333 * 16 14 12 31 31 H 1.08998 * 109.61633 * 45.92285 * 16 14 12 32 32 H 1.09002 * 109.26482 * 175.24371 * 17 16 14 33 33 H 1.09001 * 109.26608 * 294.70574 * 17 16 14 34 34 H 1.09000 * 117.53727 * 142.70121 * 20 18 17 35 35 H 1.09003 * 117.54207 * 357.45932 * 20 18 17 36 36 H 1.08996 * 109.35780 * 218.32060 * 23 21 18 37 37 H 1.08999 * 109.35913 * 98.73191 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1269 2.8776 -1.6727 7 7 3.3465 3.2571 -2.9125 8 14 3.7338 3.9288 -0.2528 9 1 5.1069 3.5070 0.1238 10 1 3.7497 5.3554 -0.6645 11 1 2.8273 3.7595 0.9113 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0005 15 1 0.7628 -2.5385 -0.8927 16 6 0.5033 -2.5573 1.2503 17 6 -0.5038 -3.6924 1.0648 18 6 0.2201 -4.9940 0.7388 19 1 -0.4290 -5.7848 0.3627 20 6 1.3893 -5.4473 1.6032 21 6 1.6282 -4.9605 0.1656 22 1 1.8876 -5.7256 -0.5662 23 6 2.3758 -3.6368 0.0218 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5140 28 1 3.1499 1.1384 0.5139 29 1 3.8233 4.0830 -3.0898 30 1 1.1244 -2.7582 2.1233 31 1 -0.0280 -1.6156 1.3881 32 1 -1.0795 -3.8159 1.9821 33 1 -1.1802 -3.4431 0.2472 34 1 1.4886 -6.5154 1.7967 35 1 1.6996 -4.7905 2.4159 36 1 2.9468 -3.6433 -0.9066 37 1 3.0586 -3.5142 0.8626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403530732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:25 Heat of formation + Delta-G solvation = -39.479488 kcal Electronic energy + Delta-G solvation = -17370.873223 eV Core-core repulsion = 14726.677396 eV Total energy + Delta-G solvation = -2644.195828 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.47191 -39.53173 -36.72487 -34.94153 -33.97908 -31.70255 -30.42899 -27.52563 -26.21216 -24.75458 -23.40796 -22.00123 -20.20384 -19.38271 -19.09492 -17.80210 -17.31687 -16.88964 -16.42906 -15.73192 -14.98728 -14.90152 -14.72395 -14.59016 -14.22892 -13.71422 -13.67787 -13.46421 -13.11705 -12.94455 -12.80590 -12.44484 -12.32023 -12.16110 -12.06108 -11.87629 -11.76066 -11.34907 -10.85106 -10.62268 -10.54182 -10.46301 -9.39565 -8.35869 -6.41243 1.31141 1.35673 1.44145 1.79201 2.29489 2.32693 2.89113 2.98510 3.54284 3.77579 3.84401 4.00720 4.06062 4.22134 4.25849 4.35716 4.48093 4.58373 4.65331 4.71719 4.79142 4.85222 4.91470 4.94088 4.98360 5.06789 5.18495 5.25343 5.31368 5.37761 5.41497 5.43190 5.45406 5.61702 6.22274 6.59858 6.69457 7.19618 7.41652 8.81297 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046232 B = 0.005903 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.500394 B = 4742.331624 C = 4895.168550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.237 1.237 12 C 0.498 3.502 13 O -0.599 6.599 14 C -0.092 4.092 15 H 0.107 0.893 16 C -0.120 4.120 17 C -0.082 4.082 18 C -0.129 4.129 19 H 0.117 0.883 20 C -0.182 4.182 21 C -0.160 4.160 22 H 0.109 0.891 23 C -0.066 4.066 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.269 0.731 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 -14.843 11.227 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C 0.099 3.901 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.160 1.160 12 C 0.287 3.713 13 O -0.481 6.481 14 C -0.113 4.113 15 H 0.125 0.875 16 C -0.158 4.158 17 C -0.119 4.119 18 C -0.147 4.147 19 H 0.135 0.865 20 C -0.218 4.218 21 C -0.178 4.178 22 H 0.127 0.873 23 C -0.104 4.104 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.977 -14.688 11.130 21.450 hybrid contribution 1.042 0.808 -0.312 1.355 sum -9.936 -13.880 10.818 20.209 Atomic orbital electron populations 1.22134 0.77732 1.03926 1.02848 1.47948 1.08422 1.05844 1.71420 1.19346 0.92732 0.82725 0.95276 1.21568 1.36908 1.06758 0.92400 0.95521 1.25877 0.95220 0.98957 0.98708 1.70050 1.42691 1.24522 1.21337 0.85689 0.79505 0.77765 0.79824 1.20335 1.19785 1.15990 1.21490 0.87730 0.86752 0.75289 1.90610 1.16786 1.88215 1.52484 1.21300 0.97871 0.89790 1.02350 0.87510 1.21882 0.97581 1.01512 0.94799 1.20968 0.96633 0.90944 1.03383 1.22047 0.90149 1.00025 1.02502 0.86493 1.23181 1.03613 1.01775 0.93275 1.22167 0.99966 0.97539 0.98123 0.87265 1.20725 0.96225 0.91971 1.01481 0.89616 0.91628 0.89255 0.92974 0.96599 0.92218 0.92274 0.89023 0.89138 0.89723 0.87630 0.89518 0.93341 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 8.82 127.77 1.13 3.26 16 2 N -0.61 -25.09 2.86 -851.12 -2.43 -27.52 16 3 C 0.22 11.07 4.23 85.63 0.36 11.43 16 4 C -0.54 -32.42 9.94 25.60 0.25 -32.17 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 8 Si 0.95 45.15 27.47 68.60 1.88 47.04 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 12 C 0.50 21.00 7.08 87.66 0.62 21.62 16 13 O -0.60 -31.65 15.50 -3.01 -0.05 -31.70 16 14 C -0.09 -2.70 1.68 -11.48 -0.02 -2.72 16 15 H 0.11 2.88 7.34 -2.39 -0.02 2.86 16 16 C -0.12 -2.56 4.59 30.65 0.14 -2.42 16 17 C -0.08 -1.22 5.97 30.37 0.18 -1.04 16 18 C -0.13 -2.08 6.01 -11.51 -0.07 -2.15 16 19 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 20 C -0.18 -3.21 9.66 30.58 0.30 -2.91 16 21 C -0.16 -3.38 6.19 -10.98 -0.07 -3.45 16 22 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 23 C -0.07 -1.95 4.48 30.46 0.14 -1.81 16 24 H 0.09 1.83 6.75 -2.39 -0.02 1.81 16 25 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 26 H 0.09 2.05 6.15 -2.39 -0.01 2.04 16 27 H 0.05 2.36 7.13 -2.38 -0.02 2.34 16 28 H 0.02 0.86 6.85 -2.39 -0.02 0.84 16 29 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.06 1.36 7.11 -2.39 -0.02 1.34 16 31 H 0.09 1.79 4.50 -2.39 -0.01 1.78 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.68 7.26 -2.39 -0.02 1.66 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.74 7.85 -2.39 -0.02 1.72 16 Total: -1.00 -77.65 288.89 4.12 -73.53 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.99 Total: 10.41 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 3.43 Total: -11.28 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.13 Total: -88.00 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.05 Total: -31.70 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -77.65 4.12 -73.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403530732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.055 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds