Wall clock time and date at job start Mon Mar 30 2020 03:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99980 * 2 1 4 4 C 1.53003 * 109.46616 * 269.99970 * 3 2 1 5 5 H 1.09000 * 109.61513 * 55.36126 * 4 3 2 6 6 C 1.53303 * 109.61803 * 294.99672 * 4 3 2 7 7 C 1.52879 * 108.58106 * 165.82824 * 6 4 3 8 8 C 1.52708 * 110.15183 * 54.52593 * 7 6 4 9 9 H 1.08992 * 115.39040 * 127.17225 * 8 7 6 10 10 C 1.53653 * 116.02768 * 269.79766 * 8 7 6 11 11 C 1.49167 * 60.26873 * 111.29613 * 10 8 7 12 12 H 1.08998 * 116.24012 * 106.62135 * 11 10 8 13 13 C 1.52457 * 121.66269 * 250.87517 * 11 10 8 14 14 C 1.34773 * 119.99688 * 179.97438 * 2 1 3 15 15 O 1.21692 * 119.99628 * 179.97438 * 14 2 1 16 16 C 1.46370 * 120.00399 * 0.02562 * 14 2 1 17 17 H 1.07995 * 120.00011 * 4.85990 * 16 14 2 18 18 C 1.40054 * 120.00221 * 184.85864 * 16 14 2 19 19 N 1.30673 * 120.00113 * 184.06764 * 18 16 14 20 20 Si 1.86795 * 119.99728 * 4.06858 * 18 16 14 21 21 H 1.48508 * 109.47031 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47246 * 60.00015 * 20 18 16 23 23 H 1.48505 * 109.47404 * 300.00060 * 20 18 16 24 24 H 1.09006 * 109.47142 * 270.00419 * 1 2 3 25 25 H 1.09000 * 109.47326 * 29.99906 * 1 2 3 26 26 H 1.09002 * 109.47264 * 150.00447 * 1 2 3 27 27 H 1.08996 * 109.47354 * 29.99590 * 3 2 1 28 28 H 1.08997 * 109.46826 * 150.00070 * 3 2 1 29 29 H 1.08991 * 109.61904 * 285.56056 * 6 4 3 30 30 H 1.09004 * 109.61249 * 45.91761 * 6 4 3 31 31 H 1.09003 * 109.35380 * 174.73243 * 7 6 4 32 32 H 1.08999 * 109.35765 * 294.31347 * 7 6 4 33 33 H 1.09004 * 117.53627 * 219.06435 * 10 8 7 34 34 H 1.08996 * 117.54232 * 4.23371 * 10 8 7 35 35 H 1.09000 * 108.37425 * 288.74624 * 13 11 10 36 36 H 1.08999 * 110.62443 * 169.01494 * 13 11 10 37 37 H 0.96999 * 119.99640 * 354.70983 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7103 -1.4426 5 1 1.5067 1.7618 -1.9821 6 6 3.3840 0.7062 -2.1312 7 6 3.3428 0.9580 -3.6386 8 6 3.6743 2.4185 -3.9372 9 1 4.4724 2.5777 -4.6621 10 6 2.4807 3.3850 -3.9834 11 6 3.4741 3.4886 -2.8754 12 1 4.1575 4.3367 -2.9187 13 6 3.1259 3.0827 -1.4478 14 6 2.1388 -1.1672 0.0005 15 8 3.3557 -1.1672 0.0001 16 6 1.4070 -2.4348 0.0005 17 1 0.3300 -2.4365 -0.0791 18 6 2.1034 -3.6455 0.1038 19 7 1.4584 -4.7792 0.0239 20 14 3.9543 -3.6397 0.3557 21 1 4.4479 -5.0383 0.4321 22 1 4.2797 -2.9298 1.6188 23 1 4.6069 -2.9465 -0.7840 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1384 0.5138 29 1 4.4018 0.8408 -1.7653 30 1 3.0496 -0.3091 -1.9177 31 1 4.0706 0.3141 -4.1324 32 1 2.3462 0.7293 -4.0160 33 1 2.4913 4.1628 -4.7470 34 1 1.4982 2.9848 -3.7330 35 1 2.4380 3.8225 -1.0383 36 1 4.0228 3.0455 -0.8296 37 1 0.4899 -4.7834 -0.0297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403694776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:43 Heat of formation + Delta-G solvation = -41.653242 kcal Electronic energy + Delta-G solvation = -17710.861418 eV Core-core repulsion = 15066.571329 eV Total energy + Delta-G solvation = -2644.290089 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73543 -38.04834 -34.73753 -32.96911 -32.65675 -30.75668 -27.48011 -26.00239 -24.69444 -23.66254 -21.45011 -20.72168 -19.09663 -18.25160 -17.26781 -16.04790 -15.49430 -15.11991 -14.39819 -14.03818 -13.75123 -13.59442 -13.34700 -12.70302 -12.36888 -12.13760 -12.04682 -11.90527 -11.85694 -11.57384 -11.14014 -11.03335 -10.51757 -10.35250 -10.28829 -10.16129 -9.84449 -9.60840 -9.37440 -9.08410 -8.93980 -7.85639 -7.51139 -6.96051 -4.90021 3.60550 3.70322 3.88369 4.05719 4.31972 4.36552 4.62806 4.72647 4.90978 5.03702 5.25282 5.30737 5.48219 5.53902 5.60981 5.77089 5.80377 5.85807 5.86135 5.92179 5.96376 6.12199 6.17124 6.20454 6.28906 6.33880 6.40361 6.52196 6.55131 6.60902 6.90706 7.12228 7.30021 7.77186 7.83161 8.14947 8.86498 8.99856 10.07215 10.35510 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.007699 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.772877 B = 3635.939132 C = 3943.345027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.638 5.638 3 C 0.129 3.871 4 C -0.101 4.101 5 H 0.062 0.938 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.150 4.150 9 H 0.096 0.904 10 C -0.180 4.180 11 C -0.136 4.136 12 H 0.089 0.911 13 C -0.082 4.082 14 C 0.554 3.446 15 O -0.611 6.611 16 C -0.598 4.598 17 H 0.074 0.926 18 C 0.060 3.940 19 N -0.835 5.835 20 Si 1.130 2.870 21 H -0.325 1.325 22 H -0.292 1.292 23 H -0.281 1.281 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 14.129 -4.736 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.371 5.371 3 C 0.004 3.996 4 C -0.121 4.121 5 H 0.081 0.919 6 C -0.149 4.149 7 C -0.126 4.126 8 C -0.168 4.168 9 H 0.114 0.886 10 C -0.217 4.217 11 C -0.154 4.154 12 H 0.108 0.892 13 C -0.119 4.119 14 C 0.364 3.636 15 O -0.504 6.504 16 C -0.634 4.634 17 H 0.092 0.908 18 C -0.157 4.157 19 N -0.462 5.462 20 Si 0.964 3.036 21 H -0.257 1.257 22 H -0.219 1.219 23 H -0.208 1.208 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.799 13.163 -4.624 14.067 hybrid contribution -1.828 1.245 -0.236 2.224 sum -0.029 14.408 -4.860 15.206 Atomic orbital electron populations 1.21410 0.81625 1.01263 0.99910 1.47517 1.05374 1.05368 1.78887 1.21154 0.97554 0.85891 0.94956 1.21619 0.98551 0.94295 0.97596 0.91939 1.21689 0.99475 1.01090 0.92609 1.21064 1.00984 0.92668 0.97882 1.22233 0.99788 0.92539 1.02222 0.88561 1.22572 0.95214 1.02810 1.01104 1.21276 1.02335 0.99840 0.91935 0.89246 1.20937 1.00576 0.96532 0.93899 1.18381 0.86517 0.83424 0.75250 1.90125 1.14829 1.85127 1.60329 1.22182 0.95854 0.90714 1.54654 0.90773 1.27163 1.09529 0.90616 0.88412 1.70661 1.11326 1.28127 1.36107 0.82357 0.71536 0.70908 0.78843 1.25743 1.21921 1.20792 0.94704 0.93728 0.91035 0.92753 0.90624 0.92204 0.89199 0.92031 0.92286 0.89499 0.88950 0.92285 0.91213 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.18 59.85 0.61 2.46 16 2 N -0.64 -13.64 2.77 -183.25 -0.51 -14.15 16 3 C 0.13 2.32 5.01 -4.04 -0.02 2.30 16 4 C -0.10 -1.64 2.15 -90.53 -0.19 -1.83 16 5 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 6 C -0.11 -2.07 4.57 -26.64 -0.12 -2.19 16 7 C -0.09 -1.40 5.83 -26.94 -0.16 -1.55 16 8 C -0.15 -2.00 6.29 -90.90 -0.57 -2.57 16 9 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 10 C -0.18 -2.16 9.56 -28.28 -0.27 -2.43 16 11 C -0.14 -1.70 5.82 -93.25 -0.54 -2.25 16 12 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 13 C -0.08 -1.09 5.28 -27.07 -0.14 -1.24 16 14 C 0.55 14.45 6.01 -12.99 -0.08 14.37 16 15 O -0.61 -16.92 9.72 5.20 0.05 -16.87 16 16 C -0.60 -16.68 9.19 -35.63 -0.33 -17.01 16 17 H 0.07 2.03 6.15 -52.49 -0.32 1.71 16 18 C 0.06 1.73 5.52 -17.36 -0.10 1.63 16 19 N -0.83 -24.11 13.64 55.55 0.76 -23.35 16 20 Si 1.13 29.98 25.94 -169.99 -4.41 25.57 16 21 H -0.33 -8.38 7.11 56.52 0.40 -7.98 16 22 H -0.29 -7.81 7.11 56.52 0.40 -7.40 16 23 H -0.28 -7.59 6.83 56.52 0.39 -7.21 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 26 H 0.07 1.39 6.04 -51.93 -0.31 1.08 16 27 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.08 1.50 7.42 -51.93 -0.39 1.11 16 29 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 30 H 0.09 2.07 4.91 -51.93 -0.25 1.81 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.16 7.27 -51.93 -0.38 0.79 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.28 7.66 8.72 -40.82 -0.36 7.31 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -30.17 285.41 -7.55 -37.71 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.83 Total: -2.92 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.91 Total: -10.31 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.25 Total: -37.49 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.05 Total: -16.87 kcal Atomic # 14 Polarization: 29.98 SS G_CDS: -4.41 Total: 25.57 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.17 -7.55 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403694776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.939 kcal (2) G-P(sol) polarization free energy of solvation -30.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds