Wall clock time and date at job start Mon Mar 30 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00417 * 2 1 4 4 C 1.50698 * 109.46851 * 89.99537 * 3 2 1 5 5 H 1.08006 * 120.00502 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00076 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99433 * 359.72883 * 6 4 3 8 8 Si 1.86794 * 120.00224 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47200 * 179.72409 * 8 6 4 10 10 H 1.48494 * 109.47037 * 299.72148 * 8 6 4 11 11 H 1.48500 * 109.47468 * 59.72735 * 8 6 4 12 12 C 1.34780 * 119.99909 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00133 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99925 * 359.97438 * 12 2 1 15 15 H 1.09005 * 110.05524 * 21.04511 * 14 12 2 16 16 C 1.54391 * 110.06879 * 142.52499 * 14 12 2 17 17 C 1.54925 * 104.22196 * 142.78321 * 16 14 12 18 18 C 1.54993 * 102.82242 * 322.28616 * 17 16 14 19 19 C 1.53478 * 110.07471 * 259.49689 * 14 12 2 20 20 C 1.52574 * 121.05040 * 96.57058 * 19 14 12 21 21 C 1.52554 * 121.08721 * 24.85720 * 19 14 12 22 22 H 1.09007 * 109.47413 * 89.99882 * 1 2 3 23 23 H 1.08999 * 109.47682 * 210.00271 * 1 2 3 24 24 H 1.08996 * 109.47467 * 330.00005 * 1 2 3 25 25 H 1.09000 * 109.46816 * 329.99982 * 3 2 1 26 26 H 1.08994 * 109.47147 * 209.99963 * 3 2 1 27 27 H 0.97000 * 120.00329 * 0.26971 * 7 6 4 28 28 H 1.08993 * 110.48114 * 261.47008 * 16 14 12 29 29 H 1.08999 * 110.47737 * 24.09982 * 16 14 12 30 30 H 1.09003 * 110.74265 * 80.61328 * 17 16 14 31 31 H 1.08997 * 110.74216 * 203.94963 * 17 16 14 32 32 H 1.08995 * 110.51556 * 156.21847 * 18 17 16 33 33 H 1.09011 * 110.50857 * 278.79271 * 18 17 16 34 34 H 1.09008 * 117.50866 * 356.96742 * 20 19 14 35 35 H 1.08997 * 117.51412 * 142.06424 * 20 19 14 36 36 H 1.08998 * 117.50902 * 217.88416 * 21 19 14 37 37 H 1.08999 * 117.50558 * 2.92855 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0979 1.0957 2.2418 6 6 3.1260 2.8779 1.6729 7 7 3.5576 3.6155 0.6732 8 14 3.4378 3.4168 3.4340 9 1 4.1856 4.6998 3.4340 10 1 2.1404 3.6001 4.1326 11 1 4.2355 2.3790 4.1354 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 1 0.3706 -2.3184 -0.3657 16 6 2.1167 -3.5072 -0.8802 17 6 1.9322 -4.8479 -0.1262 18 6 2.0535 -4.4261 1.3603 19 6 1.3500 -3.0590 1.4195 20 6 0.1479 -2.8382 2.3328 21 6 1.4854 -2.1626 2.6465 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 1.6085 2.0283 -0.5138 26 1 3.1499 1.1383 -0.5138 27 1 3.3960 3.3354 -0.2413 28 1 1.6582 -3.5587 -1.8677 29 1 3.1747 -3.2582 -0.9624 30 1 0.9487 -5.2722 -0.3280 31 1 2.7199 -5.5525 -0.3931 32 1 1.5464 -5.1449 2.0039 33 1 3.1012 -4.3316 1.6462 34 1 -0.6592 -2.2079 1.9593 35 1 -0.1591 -3.6673 2.9703 36 1 2.0581 -2.5473 3.4903 37 1 1.5586 -1.0880 2.4792 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528171934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:15 Heat of formation + Delta-G solvation = -24.069414 kcal Electronic energy + Delta-G solvation = -17724.494597 eV Core-core repulsion = 15080.967000 eV Total energy + Delta-G solvation = -2643.527597 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12034 -37.55869 -35.01112 -33.87963 -32.81317 -29.41971 -27.27314 -26.00275 -25.14366 -22.98738 -22.24464 -20.77133 -19.65121 -17.69086 -16.92301 -16.49519 -15.74211 -15.36441 -14.74751 -14.12976 -13.84487 -13.68204 -12.99689 -12.74252 -12.40897 -12.34209 -12.27267 -11.84235 -11.53500 -11.28824 -11.11139 -10.99243 -10.81338 -10.69852 -10.57706 -10.40227 -10.09571 -10.05661 -9.71142 -9.10072 -8.75137 -8.37254 -7.58179 -6.36898 -4.08767 3.35953 3.43318 3.47560 3.64522 3.76126 4.11197 4.50786 4.54821 4.75474 4.98326 5.03459 5.21870 5.31327 5.34282 5.40059 5.48730 5.60412 5.70907 5.80976 5.84555 5.90390 5.91037 6.00601 6.09066 6.14894 6.17859 6.26851 6.29790 6.44672 6.50666 6.84383 7.15365 7.44133 8.05855 8.33625 8.45154 8.79529 9.08288 9.61000 11.00221 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.007522 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.119711 B = 3721.392793 C = 3990.199881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.600 5.600 3 C 0.235 3.765 4 C -0.604 4.604 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.910 5.910 8 Si 1.070 2.930 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.515 3.485 13 O -0.538 6.538 14 C -0.081 4.081 15 H 0.086 0.914 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.085 4.085 19 C -0.115 4.115 20 C -0.170 4.170 21 C -0.166 4.166 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.032 0.968 27 H 0.267 0.733 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -14.438 -0.053 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.332 5.332 3 C 0.115 3.885 4 C -0.642 4.642 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.546 5.546 8 Si 0.898 3.102 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.214 1.214 12 C 0.302 3.698 13 O -0.416 6.416 14 C -0.102 4.102 15 H 0.104 0.896 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.207 4.207 21 C -0.203 4.203 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.204 -13.200 0.855 15.062 hybrid contribution -0.921 -1.070 -0.856 1.652 sum -8.125 -14.270 -0.002 16.421 Atomic orbital electron populations 1.21701 0.81612 1.02633 1.00354 1.47977 1.05954 1.07473 1.71788 1.19321 0.91934 0.79122 0.98094 1.22238 1.40711 1.09409 0.91879 0.93048 1.25797 0.93338 0.93378 1.05973 1.70799 1.43942 1.39761 1.00101 0.83532 0.76441 0.76328 0.73928 1.20651 1.21455 1.21381 1.20205 0.88029 0.84793 0.76785 1.90635 1.13973 1.87019 1.49930 1.21487 0.99989 0.93822 0.94950 0.89556 1.22342 1.02057 0.93288 0.97212 1.22431 1.01285 0.96862 0.94979 1.21852 1.00307 0.93434 0.96642 1.21453 1.02337 0.97198 0.90596 1.23044 0.91769 1.03144 1.02751 1.23085 0.98975 1.00082 0.98187 0.93855 0.92139 0.90846 0.96251 0.94954 0.92248 0.91638 0.89727 0.91595 0.91430 0.91768 0.90959 0.88877 0.88863 0.88870 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 9.87 59.84 0.59 1.94 16 2 N -0.60 -13.11 2.80 -182.96 -0.51 -13.62 16 3 C 0.24 6.25 4.47 -5.19 -0.02 6.23 16 4 C -0.60 -17.44 9.39 -34.44 -0.32 -17.76 16 5 H 0.05 1.49 7.29 -52.48 -0.38 1.10 16 6 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 7 N -0.91 -28.11 13.65 55.43 0.76 -27.35 16 8 Si 1.07 25.89 29.90 -169.99 -5.08 20.80 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.09 5.30 -10.98 -0.06 11.03 16 13 O -0.54 -14.00 15.49 5.55 0.09 -13.92 16 14 C -0.08 -1.30 2.41 -90.80 -0.22 -1.52 16 15 H 0.09 1.22 6.19 -51.93 -0.32 0.89 16 16 C -0.11 -1.59 6.33 -24.99 -0.16 -1.75 16 17 C -0.12 -1.36 6.91 -24.66 -0.17 -1.54 16 18 C -0.09 -1.09 6.58 -25.23 -0.17 -1.26 16 19 C -0.12 -1.71 2.26 -154.26 -0.35 -2.06 16 20 C -0.17 -2.21 10.01 -26.90 -0.27 -2.48 16 21 C -0.17 -2.74 9.63 -26.91 -0.26 -3.00 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.86 4.61 -51.93 -0.24 0.62 16 24 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 25 H 0.02 0.52 7.94 -51.93 -0.41 0.10 16 26 H 0.03 0.96 7.28 -51.93 -0.38 0.58 16 27 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.43 7.01 -51.93 -0.36 1.06 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 34 H 0.09 1.14 6.68 -51.92 -0.35 0.80 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.11 2.18 6.74 -51.93 -0.35 1.83 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -33.44 295.93 -7.48 -40.92 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.68 Total: 0.41 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.50 Total: -11.70 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.24 Total: -40.97 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.80 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.44 -7.48 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528171934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.850 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds