Wall clock time and date at job start Mon Mar 30 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00417 * 2 1 4 4 C 1.50698 * 109.46851 * 89.99537 * 3 2 1 5 5 H 1.08006 * 120.00502 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00076 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99433 * 359.72883 * 6 4 3 8 8 Si 1.86794 * 120.00224 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47200 * 179.72409 * 8 6 4 10 10 H 1.48494 * 109.47037 * 299.72148 * 8 6 4 11 11 H 1.48500 * 109.47468 * 59.72735 * 8 6 4 12 12 C 1.34780 * 119.99909 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00133 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99925 * 359.97438 * 12 2 1 15 15 H 1.09005 * 110.05524 * 21.04511 * 14 12 2 16 16 C 1.54391 * 110.06879 * 142.52499 * 14 12 2 17 17 C 1.54925 * 104.22196 * 142.78321 * 16 14 12 18 18 C 1.54993 * 102.82242 * 322.28616 * 17 16 14 19 19 C 1.53478 * 110.07471 * 259.49689 * 14 12 2 20 20 C 1.52574 * 121.05040 * 96.57058 * 19 14 12 21 21 C 1.52554 * 121.08721 * 24.85720 * 19 14 12 22 22 H 1.09007 * 109.47413 * 89.99882 * 1 2 3 23 23 H 1.08999 * 109.47682 * 210.00271 * 1 2 3 24 24 H 1.08996 * 109.47467 * 330.00005 * 1 2 3 25 25 H 1.09000 * 109.46816 * 329.99982 * 3 2 1 26 26 H 1.08994 * 109.47147 * 209.99963 * 3 2 1 27 27 H 0.97000 * 120.00329 * 0.26971 * 7 6 4 28 28 H 1.08993 * 110.48114 * 261.47008 * 16 14 12 29 29 H 1.08999 * 110.47737 * 24.09982 * 16 14 12 30 30 H 1.09003 * 110.74265 * 80.61328 * 17 16 14 31 31 H 1.08997 * 110.74216 * 203.94963 * 17 16 14 32 32 H 1.08995 * 110.51556 * 156.21847 * 18 17 16 33 33 H 1.09011 * 110.50857 * 278.79271 * 18 17 16 34 34 H 1.09008 * 117.50866 * 356.96742 * 20 19 14 35 35 H 1.08997 * 117.51412 * 142.06424 * 20 19 14 36 36 H 1.08998 * 117.50902 * 217.88416 * 21 19 14 37 37 H 1.08999 * 117.50558 * 2.92855 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0979 1.0957 2.2418 6 6 3.1260 2.8779 1.6729 7 7 3.5576 3.6155 0.6732 8 14 3.4378 3.4168 3.4340 9 1 4.1856 4.6998 3.4340 10 1 2.1404 3.6001 4.1326 11 1 4.2355 2.3790 4.1354 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 1 0.3706 -2.3184 -0.3657 16 6 2.1167 -3.5072 -0.8802 17 6 1.9322 -4.8479 -0.1262 18 6 2.0535 -4.4261 1.3603 19 6 1.3500 -3.0590 1.4195 20 6 0.1479 -2.8382 2.3328 21 6 1.4854 -2.1626 2.6465 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 1.6085 2.0283 -0.5138 26 1 3.1499 1.1383 -0.5138 27 1 3.3960 3.3354 -0.2413 28 1 1.6582 -3.5587 -1.8677 29 1 3.1747 -3.2582 -0.9624 30 1 0.9487 -5.2722 -0.3280 31 1 2.7199 -5.5525 -0.3931 32 1 1.5464 -5.1449 2.0039 33 1 3.1012 -4.3316 1.6462 34 1 -0.6592 -2.2079 1.9593 35 1 -0.1591 -3.6673 2.9703 36 1 2.0581 -2.5473 3.4903 37 1 1.5586 -1.0880 2.4792 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528171934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:15 Heat of formation + Delta-G solvation = -45.269180 kcal Electronic energy + Delta-G solvation = -17725.413888 eV Core-core repulsion = 15080.967000 eV Total energy + Delta-G solvation = -2644.446888 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.56066 -39.02790 -36.84875 -35.04498 -34.95055 -30.86545 -29.01830 -27.43727 -26.58132 -25.02245 -23.39838 -22.01206 -21.02168 -19.25185 -18.97544 -18.07791 -17.24399 -16.72248 -16.05357 -15.81824 -15.56540 -15.19970 -14.50601 -14.27185 -13.98931 -13.73653 -13.64856 -13.47828 -13.30016 -13.00587 -12.58301 -12.39425 -12.30487 -11.98927 -11.97069 -11.80393 -11.50945 -11.22924 -11.17416 -11.03220 -10.65034 -10.32952 -9.48896 -8.72234 -6.47989 1.45110 1.54560 1.71748 1.74545 2.22274 2.50249 2.82353 3.06663 3.36591 3.63085 3.76208 3.88721 4.04613 4.15710 4.25658 4.33070 4.43233 4.53141 4.66317 4.69143 4.70575 4.77192 4.83435 4.88967 4.90103 5.01983 5.06376 5.15507 5.17449 5.21029 5.26730 5.45183 5.54667 5.79176 6.11820 6.41595 6.65735 7.26669 7.40588 8.62137 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.007522 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.119711 B = 3721.392793 C = 3990.199881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.607 5.607 3 C 0.246 3.754 4 C -0.613 4.613 5 H 0.046 0.954 6 C -0.032 4.032 7 N -0.931 5.931 8 Si 1.117 2.883 9 H -0.277 1.277 10 H -0.260 1.260 11 H -0.281 1.281 12 C 0.507 3.493 13 O -0.598 6.598 14 C -0.074 4.074 15 H 0.116 0.884 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.202 4.202 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.017 0.983 26 H -0.011 1.011 27 H 0.254 0.746 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 -16.774 0.871 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C 0.124 3.876 4 C -0.651 4.651 5 H 0.064 0.936 6 C -0.230 4.230 7 N -0.568 5.568 8 Si 0.937 3.063 9 H -0.202 1.202 10 H -0.184 1.184 11 H -0.207 1.207 12 C 0.297 3.703 13 O -0.479 6.479 14 C -0.095 4.095 15 H 0.134 0.866 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.166 4.166 21 C -0.239 4.239 22 H 0.091 0.909 23 H 0.110 0.890 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.967 -15.559 1.760 18.561 hybrid contribution -0.067 -0.340 -1.193 1.242 sum -10.035 -15.899 0.567 18.809 Atomic orbital electron populations 1.21989 0.78143 1.03832 1.02641 1.48047 1.08140 1.06020 1.71590 1.18855 0.90725 0.81541 0.96507 1.22516 1.40478 1.09368 0.92748 0.93589 1.27368 0.92628 0.93669 1.09365 1.70924 1.45442 1.40527 0.99948 0.82956 0.77766 0.76110 0.69456 1.20247 1.18439 1.20714 1.21315 0.87735 0.86363 0.74926 1.90596 1.16885 1.87998 1.52464 1.21592 1.00583 0.90608 0.96737 0.86617 1.22393 0.99776 0.94520 0.98622 1.22434 1.03469 0.95247 0.93128 1.21899 0.99131 0.92891 0.98338 1.21645 1.04117 0.97519 0.89139 1.23179 0.90039 1.02745 1.00673 1.22944 1.03285 0.97846 0.99845 0.90895 0.89024 0.91604 0.96473 0.99309 0.93648 0.89415 0.93406 0.88541 0.90188 0.88719 0.93221 0.87697 0.85618 0.88694 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 9.87 127.77 1.26 3.66 16 2 N -0.61 -27.08 2.80 -851.15 -2.39 -29.47 16 3 C 0.25 13.73 4.47 85.63 0.38 14.12 16 4 C -0.61 -36.72 9.39 25.60 0.24 -36.48 16 5 H 0.05 2.75 7.29 -2.91 -0.02 2.73 16 6 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 7 N -0.93 -59.46 13.65 21.45 0.29 -59.17 16 8 Si 1.12 52.56 29.90 68.60 2.05 54.61 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 C 0.51 22.38 5.30 87.66 0.46 22.84 16 13 O -0.60 -33.09 15.49 -3.04 -0.05 -33.13 16 14 C -0.07 -2.25 2.41 -10.91 -0.03 -2.28 16 15 H 0.12 2.80 6.19 -2.38 -0.01 2.78 16 16 C -0.12 -3.10 6.33 31.72 0.20 -2.90 16 17 C -0.11 -2.05 6.91 31.93 0.22 -1.83 16 18 C -0.09 -1.94 6.58 31.57 0.21 -1.73 16 19 C -0.12 -3.38 2.26 -52.02 -0.12 -3.50 16 20 C -0.13 -2.84 10.01 30.48 0.31 -2.53 16 21 C -0.20 -6.54 9.63 30.48 0.29 -6.24 16 22 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 23 H 0.09 2.30 4.61 -2.39 -0.01 2.29 16 24 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 25 H 0.02 0.96 7.94 -2.39 -0.02 0.94 16 26 H -0.01 -0.71 7.28 -2.39 -0.02 -0.73 16 27 H 0.25 16.45 7.22 -92.71 -0.67 15.78 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.65 7.01 -2.39 -0.02 1.63 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.10 2.06 6.68 -2.38 -0.02 2.04 16 35 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.06 2.58 6.74 -2.39 -0.02 2.56 16 Total: -1.00 -78.55 295.93 4.95 -73.60 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.14 Total: 11.91 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.90 Total: -18.35 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.09 Total: -88.64 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.05 Total: -33.13 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.05 Total: 54.61 kcal Total: -78.55 4.95 -73.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528171934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.327 kcal (2) G-P(sol) polarization free energy of solvation -78.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds