Wall clock time and date at job start Mon Mar 30 2020 03:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.50703 * 109.47441 * 119.99625 * 2 1 3 5 5 H 1.07998 * 120.00276 * 119.99896 * 4 2 1 6 6 C 1.37883 * 119.99736 * 300.00570 * 4 2 1 7 7 N 1.31507 * 120.00271 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99730 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47179 * 119.99821 * 8 6 4 11 11 H 1.48500 * 109.47107 * 239.99747 * 8 6 4 12 12 N 1.46494 * 109.47489 * 239.99922 * 2 1 3 13 13 C 1.34775 * 120.00096 * 84.99581 * 12 2 1 14 14 O 1.21277 * 119.99970 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99754 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.05429 * 23.13728 * 15 13 12 17 17 C 1.54387 * 110.06694 * 144.61912 * 15 13 12 18 18 C 1.54930 * 104.22133 * 142.84798 * 17 15 13 19 19 C 1.54992 * 102.81517 * 322.27064 * 18 17 15 20 20 C 1.53474 * 110.11667 * 261.61362 * 15 13 12 21 21 C 1.52551 * 121.08548 * 24.81813 * 20 15 13 22 22 C 1.52569 * 121.05229 * 96.52923 * 20 15 13 23 23 H 1.08995 * 109.47393 * 299.99861 * 1 2 3 24 24 H 1.08997 * 109.47146 * 60.00272 * 1 2 3 25 25 H 1.09002 * 109.47180 * 180.02562 * 1 2 3 26 26 H 0.97004 * 120.00602 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00037 * 265.00092 * 12 2 1 28 28 H 1.09000 * 110.48121 * 24.16289 * 17 15 13 29 29 H 1.08999 * 110.59276 * 261.58997 * 17 15 13 30 30 H 1.09001 * 110.74356 * 203.94186 * 18 17 15 31 31 H 1.08996 * 110.74116 * 80.60107 * 18 17 15 32 32 H 1.08996 * 110.51120 * 156.21939 * 19 18 17 33 33 H 1.08995 * 110.51231 * 278.93296 * 19 18 17 34 34 H 1.09005 * 117.51183 * 217.88325 * 21 20 15 35 35 H 1.09003 * 117.50869 * 2.96539 * 21 20 15 36 36 H 1.09000 * 117.51051 * 356.97680 * 22 20 15 37 37 H 1.08999 * 117.51443 * 142.06441 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.1456 -2.2874 3.6039 10 1 3.1466 -0.1871 4.8165 11 1 1.1661 -1.5864 4.8162 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 1 2.4727 -1.8009 -3.4982 17 6 1.9397 -0.1784 -4.8436 18 6 3.0417 -0.1757 -5.9326 19 6 4.3060 0.2458 -5.1413 20 6 4.1467 -0.4556 -3.7810 21 6 5.0383 -0.0834 -2.6005 22 6 5.1976 -1.4438 -3.2841 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7093 1.1619 3.4844 27 1 2.2491 -1.6318 -1.1525 28 1 1.5781 0.8341 -4.6644 29 1 1.1164 -0.8303 -5.1357 30 1 2.8132 0.5520 -6.7113 31 1 3.1666 -1.1715 -6.3578 32 1 5.2067 -0.1018 -5.6471 33 1 4.3326 1.3278 -5.0122 34 1 5.8164 0.6604 -2.7720 35 1 4.5824 -0.0677 -1.6105 36 1 4.8464 -2.3230 -2.7439 37 1 6.0804 -1.5948 -3.9054 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528314492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:15 Heat of formation + Delta-G solvation = -33.735032 kcal Electronic energy + Delta-G solvation = -17383.882104 eV Core-core repulsion = 14739.935375 eV Total energy + Delta-G solvation = -2643.946729 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95052 -37.54488 -34.79495 -33.88943 -32.32150 -29.76741 -28.10321 -25.59227 -25.22315 -22.31085 -21.84966 -20.45986 -19.58032 -18.59113 -16.88048 -15.88722 -15.45658 -15.34000 -14.86469 -14.26326 -13.96357 -13.36804 -13.04227 -12.62521 -12.40325 -12.28042 -11.76746 -11.40223 -11.29394 -11.04520 -11.00938 -10.93977 -10.76760 -10.62776 -10.46005 -10.27281 -10.22601 -10.07234 -9.70947 -9.01828 -8.77558 -8.52600 -7.85150 -6.11044 -4.20152 3.23957 3.31719 3.34370 3.43881 3.81153 4.24870 4.45119 4.53666 4.75977 5.00968 5.05748 5.21284 5.25837 5.33688 5.55188 5.70247 5.73611 5.77193 5.90916 5.93039 5.99639 6.12730 6.18598 6.23888 6.29432 6.39922 6.52401 6.85331 6.99638 7.18433 7.51145 7.60425 7.72421 7.94510 8.17450 8.72756 8.81856 9.20770 9.48085 10.94962 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035946 B = 0.006501 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.758213 B = 4305.734719 C = 4784.963063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.511 3.489 14 O -0.553 6.553 15 C -0.079 4.079 16 H 0.084 0.916 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.116 4.116 21 C -0.168 4.168 22 C -0.169 4.169 23 H 0.089 0.911 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.263 0.737 27 H 0.386 0.614 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -5.027 -12.976 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.295 3.705 14 O -0.432 6.432 15 C -0.101 4.101 16 H 0.102 0.898 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.205 4.205 22 C -0.205 4.205 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.219 0.781 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.213 -4.052 -12.825 14.425 hybrid contribution 0.395 -0.986 1.050 1.494 sum 5.608 -5.038 -11.775 13.981 Atomic orbital electron populations 1.22071 0.98603 0.99030 1.00831 1.18716 0.90957 0.93962 0.80185 0.93481 1.21263 1.32265 1.13122 0.90365 0.92106 1.24892 0.94838 0.94954 0.99055 1.69914 1.35999 1.22492 1.23721 0.86411 0.78606 0.79538 0.82649 1.19758 1.20878 1.20886 1.46602 1.65098 1.13407 1.10675 1.20265 0.78036 0.87529 0.84627 1.90618 1.51324 1.16160 1.85081 1.21439 0.93593 1.00223 0.94856 0.89810 1.22329 0.97147 1.02773 0.92610 1.22438 0.94948 1.01003 0.97251 1.21854 0.97738 1.00032 0.92629 1.21481 0.90570 1.03580 0.96006 1.23039 1.02033 0.97828 0.97567 1.23017 0.99940 0.93910 1.03679 0.89224 0.96700 0.95548 0.92662 0.78144 0.89626 0.91607 0.91476 0.91615 0.91809 0.91002 0.88902 0.87730 0.88737 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.81 2.56 -69.09 -0.18 6.63 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.71 -15.06 4.92 -54.94 -0.27 -15.33 16 13 C 0.51 10.40 5.48 -10.98 -0.06 10.34 16 14 O -0.55 -13.51 15.51 5.56 0.09 -13.43 16 15 C -0.08 -1.22 3.16 -90.80 -0.29 -1.51 16 16 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 17 C -0.11 -1.54 6.33 -24.99 -0.16 -1.70 16 18 C -0.12 -1.33 6.91 -24.66 -0.17 -1.50 16 19 C -0.09 -1.04 6.58 -25.22 -0.17 -1.20 16 20 C -0.12 -1.63 2.26 -154.26 -0.35 -1.98 16 21 C -0.17 -2.54 9.63 -26.92 -0.26 -2.80 16 22 C -0.17 -2.09 10.23 -26.91 -0.28 -2.36 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.39 7.20 8.51 -40.82 -0.35 6.85 16 28 H 0.09 1.40 6.97 -51.93 -0.36 1.04 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 1.89 7.18 -51.93 -0.37 1.52 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -30.22 300.90 -7.97 -38.19 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.98 Total: 7.09 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.95 Total: -12.29 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.36 Total: -39.86 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.22 -7.97 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528314492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.457 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds