Wall clock time and date at job start Mon Mar 30 2020 03:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.50703 * 109.47441 * 119.99625 * 2 1 3 5 5 H 1.07998 * 120.00276 * 119.99896 * 4 2 1 6 6 C 1.37883 * 119.99736 * 300.00570 * 4 2 1 7 7 N 1.31507 * 120.00271 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99730 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47179 * 119.99821 * 8 6 4 11 11 H 1.48500 * 109.47107 * 239.99747 * 8 6 4 12 12 N 1.46494 * 109.47489 * 239.99922 * 2 1 3 13 13 C 1.34775 * 120.00096 * 84.99581 * 12 2 1 14 14 O 1.21277 * 119.99970 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99754 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.05429 * 23.13728 * 15 13 12 17 17 C 1.54387 * 110.06694 * 144.61912 * 15 13 12 18 18 C 1.54930 * 104.22133 * 142.84798 * 17 15 13 19 19 C 1.54992 * 102.81517 * 322.27064 * 18 17 15 20 20 C 1.53474 * 110.11667 * 261.61362 * 15 13 12 21 21 C 1.52551 * 121.08548 * 24.81813 * 20 15 13 22 22 C 1.52569 * 121.05229 * 96.52923 * 20 15 13 23 23 H 1.08995 * 109.47393 * 299.99861 * 1 2 3 24 24 H 1.08997 * 109.47146 * 60.00272 * 1 2 3 25 25 H 1.09002 * 109.47180 * 180.02562 * 1 2 3 26 26 H 0.97004 * 120.00602 * 180.02562 * 7 6 4 27 27 H 0.97005 * 120.00037 * 265.00092 * 12 2 1 28 28 H 1.09000 * 110.48121 * 24.16289 * 17 15 13 29 29 H 1.08999 * 110.59276 * 261.58997 * 17 15 13 30 30 H 1.09001 * 110.74356 * 203.94186 * 18 17 15 31 31 H 1.08996 * 110.74116 * 80.60107 * 18 17 15 32 32 H 1.08996 * 110.51120 * 156.21939 * 19 18 17 33 33 H 1.08995 * 110.51231 * 278.93296 * 19 18 17 34 34 H 1.09005 * 117.51183 * 217.88325 * 21 20 15 35 35 H 1.09003 * 117.50869 * 2.96539 * 21 20 15 36 36 H 1.09000 * 117.51051 * 356.97680 * 22 20 15 37 37 H 1.08999 * 117.51443 * 142.06441 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.1456 -2.2874 3.6039 10 1 3.1466 -0.1871 4.8165 11 1 1.1661 -1.5864 4.8162 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 1 2.4727 -1.8009 -3.4982 17 6 1.9397 -0.1784 -4.8436 18 6 3.0417 -0.1757 -5.9326 19 6 4.3060 0.2458 -5.1413 20 6 4.1467 -0.4556 -3.7810 21 6 5.0383 -0.0834 -2.6005 22 6 5.1976 -1.4438 -3.2841 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7093 1.1619 3.4844 27 1 2.2491 -1.6318 -1.1525 28 1 1.5781 0.8341 -4.6644 29 1 1.1164 -0.8303 -5.1357 30 1 2.8132 0.5520 -6.7113 31 1 3.1666 -1.1715 -6.3578 32 1 5.2067 -0.1018 -5.6471 33 1 4.3326 1.3278 -5.0122 34 1 5.8164 0.6604 -2.7720 35 1 4.5824 -0.0677 -1.6105 36 1 4.8464 -2.3230 -2.7439 37 1 6.0804 -1.5948 -3.9054 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528314492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:15 Heat of formation + Delta-G solvation = -52.406882 kcal Electronic energy + Delta-G solvation = -17384.691777 eV Core-core repulsion = 14739.935375 eV Total energy + Delta-G solvation = -2644.756402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34531 -39.01265 -36.70782 -35.00110 -34.29801 -31.45234 -29.59281 -27.37174 -26.66943 -23.62037 -23.32531 -21.73856 -21.22146 -20.03435 -18.55594 -17.55990 -17.15744 -16.70265 -16.29318 -15.68802 -15.49170 -14.92329 -14.54650 -14.31305 -13.90768 -13.58457 -13.40510 -13.07631 -12.89907 -12.80141 -12.44992 -12.35982 -12.31251 -12.13659 -11.92817 -11.77550 -11.49673 -11.13918 -11.11960 -10.96993 -10.64563 -10.29711 -9.74616 -8.19606 -6.37394 1.42442 1.43092 1.55500 1.83052 2.33137 2.54227 2.97516 3.10736 3.44509 3.67905 3.91197 3.97148 4.14688 4.31616 4.38603 4.50925 4.71322 4.72485 4.79006 4.81378 4.88860 4.94332 5.03026 5.07027 5.09861 5.19779 5.20310 5.25169 5.30309 5.42347 5.49964 5.60645 5.67578 5.89647 6.08219 6.71040 6.98711 7.30778 7.58123 8.87099 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035946 B = 0.006501 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.758213 B = 4305.734719 C = 4784.963063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.544 4.544 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.601 6.601 15 C -0.074 4.074 16 H 0.110 0.890 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.198 4.198 22 C -0.135 4.135 23 H 0.066 0.934 24 H 0.010 0.990 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.402 0.598 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.879 -7.734 -14.341 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.354 5.354 13 C 0.295 3.705 14 O -0.483 6.483 15 C -0.096 4.096 16 H 0.128 0.872 17 C -0.152 4.152 18 C -0.145 4.145 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.235 4.235 22 C -0.171 4.171 23 H 0.085 0.915 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.236 0.764 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.579 -6.797 -14.216 17.076 hybrid contribution -0.038 -0.073 1.472 1.474 sum 6.540 -6.870 -12.744 15.887 Atomic orbital electron populations 1.21893 0.98436 0.99434 0.99438 1.18300 0.91021 0.91731 0.82214 0.98872 1.21559 1.32455 1.13447 0.90794 0.90972 1.25829 0.94860 0.95583 1.02412 1.70063 1.37108 1.24008 1.24564 0.85277 0.78129 0.78509 0.78302 1.18317 1.20949 1.20296 1.46374 1.65146 1.14001 1.09880 1.21234 0.76562 0.87086 0.85608 1.90593 1.53207 1.18590 1.85937 1.21527 0.94745 1.00959 0.92324 0.87169 1.22369 0.98744 1.01112 0.93006 1.22437 0.92790 1.02896 0.96346 1.21895 0.99625 0.98864 0.91831 1.21641 0.89690 1.04792 0.96346 1.22957 1.03260 1.00982 0.96324 1.23131 0.99776 0.92271 1.01965 0.91531 0.97118 0.94012 0.92541 0.76360 0.92972 0.89769 0.90205 0.88967 0.88988 0.92832 0.88372 0.91619 0.87986 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.54 2.56 44.25 0.11 14.65 16 3 H -0.01 -0.42 7.58 -2.39 -0.02 -0.44 16 4 C -0.54 -29.43 8.73 25.60 0.22 -29.20 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.71 -30.48 4.92 -446.11 -2.20 -32.67 16 13 C 0.51 21.16 5.48 87.66 0.48 21.64 16 14 O -0.60 -31.04 15.51 -3.02 -0.05 -31.08 16 15 C -0.07 -2.18 3.16 -10.91 -0.03 -2.22 16 16 H 0.11 2.65 8.11 -2.39 -0.02 2.63 16 17 C -0.11 -3.01 6.33 31.73 0.20 -2.81 16 18 C -0.11 -2.05 6.91 31.94 0.22 -1.83 16 19 C -0.08 -1.84 6.58 31.57 0.21 -1.63 16 20 C -0.12 -3.24 2.26 -52.02 -0.12 -3.36 16 21 C -0.20 -5.92 9.63 30.47 0.29 -5.63 16 22 C -0.13 -2.89 10.23 30.48 0.31 -2.58 16 23 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 24 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.40 14.73 8.51 -92.70 -0.79 13.94 16 28 H 0.05 1.73 6.97 -2.39 -0.02 1.71 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.07 2.48 7.18 -2.39 -0.02 2.46 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.86 300.90 3.30 -65.56 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.26 Total: 25.29 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.02 Total: -18.13 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.95 Total: -86.21 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.08 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -68.86 3.30 -65.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528314492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.154 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds