Wall clock time and date at job start Mon Mar 30 2020 04:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 119.99984 * 2 1 4 4 H 1.07999 * 120.00254 * 189.59149 * 3 2 1 5 5 C 1.38954 * 119.99958 * 9.59221 * 3 2 1 6 6 N 1.31410 * 119.99653 * 21.08174 * 5 3 2 7 7 Si 1.86792 * 119.99987 * 201.08137 * 5 3 2 8 8 H 1.48497 * 109.47318 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47307 * 120.00192 * 7 5 3 10 10 H 1.48503 * 109.47135 * 239.99805 * 7 5 3 11 11 C 1.34778 * 119.99921 * 179.97438 * 2 1 3 12 12 O 1.21299 * 119.99824 * 180.02562 * 11 2 1 13 13 C 1.50692 * 120.00334 * 0.02562 * 11 2 1 14 14 H 1.09004 * 115.55923 * 298.73133 * 13 11 2 15 15 C 1.53002 * 117.50242 * 84.41769 * 13 11 2 16 16 C 1.52999 * 60.00078 * 107.49080 * 15 13 11 17 17 H 1.09000 * 117.49814 * 107.48909 * 16 15 13 18 18 C 1.53000 * 117.50076 * 252.51179 * 16 15 13 19 19 C 1.54261 * 110.03166 * 285.97036 * 18 16 15 20 20 C 1.54894 * 104.19532 * 217.10462 * 19 18 16 21 21 C 1.54892 * 102.74524 * 37.94284 * 20 19 18 22 22 C 1.53869 * 110.03062 * 168.80228 * 18 16 15 23 23 H 1.09001 * 109.47217 * 263.40317 * 1 2 3 24 24 H 1.08994 * 109.47123 * 23.40708 * 1 2 3 25 25 H 1.09009 * 109.46760 * 143.40562 * 1 2 3 26 26 H 0.97001 * 119.99850 * 180.02562 * 6 5 3 27 27 H 1.09000 * 117.49464 * 0.02562 * 15 13 11 28 28 H 1.09002 * 117.50151 * 214.98298 * 15 13 11 29 29 H 1.08997 * 110.01528 * 47.41457 * 18 16 15 30 30 H 1.09000 * 110.48874 * 335.78122 * 19 18 16 31 31 H 1.08993 * 110.48750 * 98.42430 * 19 18 16 32 32 H 1.08992 * 110.75424 * 279.62622 * 20 19 18 33 33 H 1.09003 * 110.75434 * 156.25288 * 20 19 18 34 34 H 1.09004 * 110.47938 * 203.37891 * 21 20 19 35 35 H 1.08999 * 110.48847 * 80.74276 * 21 20 19 36 36 H 1.09006 * 110.03406 * 238.56856 * 22 18 16 37 37 H 1.09005 * 110.03826 * 359.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2191 1.1939 -0.1558 5 6 1.4703 2.3822 0.2005 6 7 0.2945 2.3784 0.7875 7 14 2.2271 3.9939 -0.3642 8 1 3.5469 3.7282 -0.9909 9 1 1.3299 4.6421 -1.3542 10 1 2.4065 4.8928 0.8042 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.7406 -2.6431 0.8626 15 6 0.9184 -3.0185 -1.3502 16 6 2.0801 -3.6891 -0.6142 17 1 1.8923 -4.6603 -0.1565 18 6 3.4865 -3.4877 -1.1819 19 6 3.6657 -4.3309 -2.4611 20 6 5.1318 -4.8256 -2.3878 21 6 5.3191 -5.1164 -0.8780 22 6 4.5377 -3.9871 -0.1753 23 1 -0.3634 -0.1181 1.0209 24 1 -0.3633 0.9430 -0.4082 25 1 -0.3633 -0.8252 -0.6127 26 1 -0.1805 3.2126 0.9271 27 1 1.1565 -2.4340 -2.2389 28 1 -0.0337 -3.5486 -1.3768 29 1 3.6523 -2.4332 -1.4026 30 1 2.9775 -5.1762 -2.4605 31 1 3.5147 -3.7156 -3.3480 32 1 5.8190 -4.0473 -2.7194 33 1 5.2627 -5.7343 -2.9754 34 1 6.3747 -5.0742 -0.6096 35 1 4.8979 -6.0886 -0.6216 36 1 5.2142 -3.1752 0.0918 37 1 4.0459 -4.3726 0.7179 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593441192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:34 Heat of formation + Delta-G solvation = -29.487826 kcal Electronic energy + Delta-G solvation = -17406.761357 eV Core-core repulsion = 14762.998800 eV Total energy + Delta-G solvation = -2643.762557 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99534 -38.99544 -36.85062 -36.26475 -33.56747 -29.53906 -29.45942 -28.33065 -26.70275 -24.28661 -22.92466 -21.35665 -20.86700 -19.80637 -18.87854 -17.77099 -16.97111 -16.56986 -15.98405 -15.87890 -15.46561 -15.10032 -14.48783 -14.13353 -13.88611 -13.51002 -13.37930 -13.13810 -12.85291 -12.54722 -12.53129 -12.32245 -12.16762 -11.97126 -11.87681 -11.81960 -11.43702 -11.27780 -10.97526 -10.76348 -10.66665 -10.06465 -9.68684 -8.36329 -5.87966 1.32920 1.39417 1.53623 2.00655 2.26501 2.83060 3.03567 3.23099 3.74263 3.85224 3.86976 4.10342 4.15550 4.16852 4.47909 4.63945 4.65807 4.72856 4.78078 4.83425 4.89248 4.96222 4.96955 5.04121 5.05964 5.17224 5.18132 5.28041 5.41399 5.44239 5.48390 5.53007 5.60079 5.83227 6.08705 6.50592 7.18788 7.53158 8.11621 8.64759 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035536 B = 0.006451 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.734322 B = 4339.183012 C = 4759.597545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.462 5.462 3 C -0.344 4.344 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.890 5.890 7 Si 0.986 3.014 8 H -0.277 1.277 9 H -0.264 1.264 10 H -0.274 1.274 11 C 0.459 3.541 12 O -0.617 6.617 13 C -0.186 4.186 14 H 0.124 0.876 15 C -0.142 4.142 16 C -0.104 4.104 17 H 0.130 0.870 18 C -0.074 4.074 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.105 4.105 23 H 0.031 0.969 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.274 0.726 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.029 0.971 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -12.796 -5.276 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.180 5.180 3 C -0.472 4.472 4 H 0.091 0.909 5 C -0.205 4.205 6 N -0.530 5.530 7 Si 0.809 3.191 8 H -0.202 1.202 9 H -0.188 1.188 10 H -0.200 1.200 11 C 0.249 3.751 12 O -0.505 6.505 13 C -0.207 4.207 14 H 0.142 0.858 15 C -0.179 4.179 16 C -0.123 4.123 17 H 0.147 0.853 18 C -0.093 4.093 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.143 4.143 23 H 0.050 0.950 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.401 -12.613 -5.208 13.651 hybrid contribution 0.219 1.428 0.326 1.481 sum 0.620 -11.185 -4.881 12.220 Atomic orbital electron populations 1.21632 0.79445 1.02036 0.99859 1.43913 1.06813 1.04704 1.62617 1.19684 0.93828 0.84205 1.49491 0.90926 1.25961 0.96875 1.02103 0.95601 1.70165 1.15730 1.28898 1.38184 0.85010 0.78318 0.77329 0.78435 1.20154 1.18848 1.20002 1.20044 0.87428 0.85148 0.82515 1.90421 1.15573 1.87556 1.56908 1.22083 1.05330 0.93033 1.00300 0.85821 1.23045 0.99861 1.02257 0.92763 1.22502 0.93079 0.95234 1.01441 0.85266 1.21511 0.92408 1.00214 0.95128 1.22379 0.97341 0.99195 0.96040 1.22485 0.96045 1.00977 0.96459 1.22371 0.99701 0.98255 0.95180 1.21951 0.97038 0.97227 0.98104 0.94995 0.90342 0.92054 0.91624 0.90318 0.85050 0.92503 0.89857 0.92888 0.92959 0.89537 0.91782 0.90060 0.95180 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.25 8.63 127.77 1.10 6.35 16 2 N -0.46 -24.82 3.03 -658.89 -1.99 -26.81 16 3 C -0.34 -20.24 9.45 84.04 0.79 -19.45 16 4 H 0.07 4.60 7.29 -2.91 -0.02 4.58 16 5 C 0.00 -0.23 4.99 84.93 0.42 0.20 16 6 N -0.89 -47.87 10.46 21.66 0.23 -47.64 16 7 Si 0.99 43.26 29.60 68.60 2.03 45.29 16 8 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 C 0.46 23.17 6.97 87.65 0.61 23.78 16 12 O -0.62 -35.14 13.13 -3.09 -0.04 -35.18 16 13 C -0.19 -6.94 4.65 -11.54 -0.05 -6.99 16 14 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 15 C -0.14 -4.15 9.23 30.59 0.28 -3.87 16 16 C -0.10 -3.20 4.62 -10.79 -0.05 -3.25 16 17 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 18 C -0.07 -2.52 2.17 -10.07 -0.02 -2.55 16 19 C -0.11 -2.94 6.33 31.67 0.20 -2.74 16 20 C -0.12 -2.86 6.91 31.89 0.22 -2.64 16 21 C -0.12 -2.85 6.83 31.67 0.22 -2.63 16 22 C -0.11 -3.45 6.19 31.32 0.19 -3.25 16 23 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 3.90 5.76 -2.39 -0.01 3.89 16 25 H 0.06 2.34 6.58 -2.38 -0.02 2.33 16 26 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.06 2.55 5.33 -2.39 -0.01 2.54 16 30 H 0.08 1.81 7.85 -2.39 -0.02 1.80 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 37 H 0.06 1.80 7.67 -2.38 -0.02 1.78 16 Total: -1.00 -66.94 292.85 5.18 -61.77 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.04 Total: 19.61 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.92 Total: -17.03 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.77 Total: -74.46 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.04 Total: -35.18 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -66.94 5.18 -61.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593441192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.277 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds