Wall clock time and date at job start Mon Mar 30 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46841 * 2 1 4 4 C 1.46509 * 119.99605 * 95.47229 * 3 2 1 5 5 C 1.50699 * 109.47005 * 275.37518 * 4 3 2 6 6 H 1.08001 * 120.00081 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00020 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99903 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00263 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47364 * 119.99907 * 9 7 5 12 12 H 1.48504 * 109.46982 * 240.00479 * 9 7 5 13 13 C 1.34775 * 120.00401 * 275.46991 * 3 2 1 14 14 O 1.21276 * 119.99693 * 3.76166 * 13 3 2 15 15 C 1.50695 * 119.99717 * 183.76390 * 13 3 2 16 16 H 1.09005 * 110.67434 * 311.08159 * 15 13 3 17 17 C 1.54889 * 110.75924 * 74.52245 * 15 13 3 18 18 C 1.54268 * 104.19754 * 156.25183 * 17 15 13 19 19 H 1.09000 * 117.75382 * 116.75009 * 18 17 15 20 20 C 1.55464 * 118.30332 * 272.80027 * 18 17 15 21 21 C 1.53001 * 59.83877 * 93.29539 * 20 18 17 22 22 H 1.08997 * 119.29847 * 111.70558 * 21 20 18 23 23 C 1.54266 * 118.20109 * 265.85454 * 21 20 18 24 24 H 1.09004 * 109.46821 * 182.68755 * 1 2 3 25 25 H 1.09006 * 109.46623 * 302.67654 * 1 2 3 26 26 H 1.08996 * 109.47863 * 62.68136 * 1 2 3 27 27 H 1.09001 * 109.46647 * 240.00425 * 2 1 3 28 28 H 1.08997 * 109.47110 * 120.00821 * 2 1 3 29 29 H 1.09004 * 109.47092 * 35.37319 * 4 3 2 30 30 H 1.08999 * 109.46973 * 155.37402 * 4 3 2 31 31 H 0.96999 * 120.00145 * 179.97438 * 8 7 5 32 32 H 1.08996 * 110.48387 * 274.93349 * 17 15 13 33 33 H 1.09002 * 110.48643 * 37.57236 * 17 15 13 34 34 H 1.09001 * 118.05966 * 346.16287 * 20 18 17 35 35 H 1.08995 * 117.16711 * 200.82327 * 20 18 17 36 36 H 1.09009 * 110.48462 * 330.31833 * 23 21 20 37 37 H 1.09004 * 110.49021 * 207.67956 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3765 2.0315 1.2631 5 6 1.1393 2.6129 1.8972 6 1 0.1819 2.5082 1.4086 7 6 1.2296 3.2786 3.1013 8 7 2.3956 3.4065 3.6960 9 14 -0.3039 4.0000 3.8871 10 1 -1.4797 3.7233 3.0232 11 1 -0.5133 3.3831 5.2214 12 1 -0.1377 5.4677 4.0407 13 6 2.1381 2.0537 -1.1618 14 8 1.7776 1.5401 -2.1996 15 6 2.7198 3.4438 -1.1712 16 1 2.2459 4.0645 -0.4107 17 6 4.2548 3.3980 -0.9697 18 6 4.7579 4.7162 -1.5933 19 1 5.2433 5.4365 -0.9348 20 6 5.0753 4.7378 -3.1150 21 6 3.6919 5.1554 -2.6123 22 1 3.3854 6.1978 -2.6982 23 6 2.5782 4.0887 -2.5724 24 1 -0.3633 -1.0266 0.0482 25 1 -0.3633 0.5549 0.8651 26 1 -0.3635 0.4716 -0.9130 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8195 1.2978 1.9366 30 1 3.0949 2.8283 1.0705 31 1 2.4592 3.8752 4.5429 32 1 4.4992 3.3604 0.0919 33 1 4.6826 2.5416 -1.4911 34 1 5.1539 3.7836 -3.6360 35 1 5.7383 5.5250 -3.4740 36 1 2.7352 3.3439 -3.3527 37 1 1.5990 4.5551 -2.6805 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:08 Heat of formation + Delta-G solvation = -22.871253 kcal Electronic energy + Delta-G solvation = -17562.192900 eV Core-core repulsion = 14918.717259 eV Total energy + Delta-G solvation = -2643.475641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.86649 -37.97922 -35.15635 -32.73542 -31.76234 -29.83290 -27.87326 -27.08285 -24.09854 -22.82658 -21.91789 -20.29980 -19.40307 -17.96397 -16.64119 -16.37452 -15.88477 -15.22685 -14.47552 -14.24728 -13.70815 -12.98064 -12.89690 -12.82839 -12.56058 -12.12479 -11.99509 -11.41162 -11.34762 -11.26128 -11.04633 -10.86460 -10.83818 -10.65206 -10.61185 -10.43905 -9.97527 -9.76748 -9.57530 -9.41612 -8.87042 -8.53928 -7.67786 -6.17840 -4.24162 3.21200 3.29827 3.32878 3.40737 3.85747 3.99238 4.33966 4.78045 4.95046 5.09018 5.15331 5.46559 5.48641 5.54543 5.75202 5.79278 5.82815 5.93690 5.96774 6.06020 6.08983 6.16698 6.28349 6.32072 6.40585 6.49160 6.50275 6.59197 6.77794 6.83111 6.93972 7.23350 7.60699 7.77878 8.07670 8.40423 8.81378 9.07161 9.43533 10.88875 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.008901 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.436810 B = 3144.842173 C = 3956.577148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.595 5.595 4 C 0.231 3.769 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.523 3.477 14 O -0.576 6.576 15 C -0.107 4.107 16 H 0.112 0.888 17 C -0.081 4.081 18 C -0.163 4.163 19 H 0.111 0.889 20 C -0.159 4.159 21 C -0.163 4.163 22 H 0.106 0.894 23 C -0.078 4.078 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 0.743 -7.437 8.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.325 5.325 4 C 0.111 3.889 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.311 3.689 14 O -0.458 6.458 15 C -0.128 4.128 16 H 0.130 0.870 17 C -0.119 4.119 18 C -0.181 4.181 19 H 0.129 0.871 20 C -0.196 4.196 21 C -0.181 4.181 22 H 0.124 0.876 23 C -0.116 4.116 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.129 0.529 -7.759 8.383 hybrid contribution -0.881 0.568 0.829 1.336 sum 2.248 1.097 -6.930 7.368 Atomic orbital electron populations 1.22130 0.96574 1.00761 1.02851 1.21170 0.94447 0.83441 1.01079 1.48257 1.62801 1.13120 1.08300 1.19598 0.96569 0.93490 0.79248 1.21581 0.94602 1.35547 1.05596 0.91887 1.24937 0.96196 0.95907 0.96828 1.69927 1.23378 1.42276 1.17421 0.86499 0.83205 0.78892 0.79251 1.19695 1.20883 1.20855 1.20325 0.78109 0.87310 0.83111 1.90562 1.52233 1.70211 1.32756 1.22398 0.96607 0.94635 0.99187 0.87017 1.21897 0.92824 0.95500 1.01659 1.23615 1.03956 0.99693 0.90805 0.87060 1.23417 0.97847 1.02590 0.95768 1.23249 0.90170 0.99579 1.05112 0.87595 1.21808 0.97100 0.96203 0.96446 0.93183 0.91191 0.92940 0.91988 0.91101 0.95005 0.93409 0.92641 0.89626 0.91716 0.89087 0.88836 0.90354 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.20 37.16 0.38 -2.65 16 2 C 0.12 2.33 6.08 -4.04 -0.02 2.30 16 3 N -0.59 -12.69 2.47 -175.05 -0.43 -13.12 16 4 C 0.23 5.42 4.92 -5.19 -0.03 5.39 16 5 C -0.53 -13.79 9.06 -34.44 -0.31 -14.10 16 6 H 0.06 1.66 6.81 -52.49 -0.36 1.31 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.52 11.08 6.93 -10.99 -0.08 11.00 16 14 O -0.58 -13.18 15.38 5.56 0.09 -13.10 16 15 C -0.11 -2.00 2.25 -89.78 -0.20 -2.20 16 16 H 0.11 2.27 7.53 -51.93 -0.39 1.88 16 17 C -0.08 -1.35 5.66 -25.07 -0.14 -1.49 16 18 C -0.16 -2.34 7.04 -88.19 -0.62 -2.96 16 19 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 20 C -0.16 -2.01 10.21 -25.42 -0.26 -2.27 16 21 C -0.16 -2.30 6.85 -89.50 -0.61 -2.91 16 22 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 23 C -0.08 -1.28 5.77 -25.07 -0.14 -1.43 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.40 6.78 -51.93 -0.35 1.05 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.06 1.14 7.65 -51.93 -0.40 0.75 16 28 H 0.07 1.27 7.89 -51.93 -0.41 0.86 16 29 H 0.03 0.79 7.95 -51.93 -0.41 0.38 16 30 H 0.05 1.13 4.49 -51.93 -0.23 0.90 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.09 1.50 6.49 -51.93 -0.34 1.17 16 33 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.36 7.32 -51.92 -0.38 0.98 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 298.67 15.07 4.50 4.50 Total: -1.00 -28.06 298.67 -8.05 -36.11 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.78 Total: 3.36 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.14 Total: -9.72 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.30 Total: -36.66 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.06 -8.05 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.240 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds