Wall clock time and date at job start Mon Mar 30 2020 03:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46841 * 2 1 4 4 C 1.46509 * 119.99605 * 95.47229 * 3 2 1 5 5 C 1.50699 * 109.47005 * 275.37518 * 4 3 2 6 6 H 1.08001 * 120.00081 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00020 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99903 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00263 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47364 * 119.99907 * 9 7 5 12 12 H 1.48504 * 109.46982 * 240.00479 * 9 7 5 13 13 C 1.34775 * 120.00401 * 275.46991 * 3 2 1 14 14 O 1.21276 * 119.99693 * 3.76166 * 13 3 2 15 15 C 1.50695 * 119.99717 * 183.76390 * 13 3 2 16 16 H 1.09005 * 110.67434 * 311.08159 * 15 13 3 17 17 C 1.54889 * 110.75924 * 74.52245 * 15 13 3 18 18 C 1.54268 * 104.19754 * 156.25183 * 17 15 13 19 19 H 1.09000 * 117.75382 * 116.75009 * 18 17 15 20 20 C 1.55464 * 118.30332 * 272.80027 * 18 17 15 21 21 C 1.53001 * 59.83877 * 93.29539 * 20 18 17 22 22 H 1.08997 * 119.29847 * 111.70558 * 21 20 18 23 23 C 1.54266 * 118.20109 * 265.85454 * 21 20 18 24 24 H 1.09004 * 109.46821 * 182.68755 * 1 2 3 25 25 H 1.09006 * 109.46623 * 302.67654 * 1 2 3 26 26 H 1.08996 * 109.47863 * 62.68136 * 1 2 3 27 27 H 1.09001 * 109.46647 * 240.00425 * 2 1 3 28 28 H 1.08997 * 109.47110 * 120.00821 * 2 1 3 29 29 H 1.09004 * 109.47092 * 35.37319 * 4 3 2 30 30 H 1.08999 * 109.46973 * 155.37402 * 4 3 2 31 31 H 0.96999 * 120.00145 * 179.97438 * 8 7 5 32 32 H 1.08996 * 110.48387 * 274.93349 * 17 15 13 33 33 H 1.09002 * 110.48643 * 37.57236 * 17 15 13 34 34 H 1.09001 * 118.05966 * 346.16287 * 20 18 17 35 35 H 1.08995 * 117.16711 * 200.82327 * 20 18 17 36 36 H 1.09009 * 110.48462 * 330.31833 * 23 21 20 37 37 H 1.09004 * 110.49021 * 207.67956 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3765 2.0315 1.2631 5 6 1.1393 2.6129 1.8972 6 1 0.1819 2.5082 1.4086 7 6 1.2296 3.2786 3.1013 8 7 2.3956 3.4065 3.6960 9 14 -0.3039 4.0000 3.8871 10 1 -1.4797 3.7233 3.0232 11 1 -0.5133 3.3831 5.2214 12 1 -0.1377 5.4677 4.0407 13 6 2.1381 2.0537 -1.1618 14 8 1.7776 1.5401 -2.1996 15 6 2.7198 3.4438 -1.1712 16 1 2.2459 4.0645 -0.4107 17 6 4.2548 3.3980 -0.9697 18 6 4.7579 4.7162 -1.5933 19 1 5.2433 5.4365 -0.9348 20 6 5.0753 4.7378 -3.1150 21 6 3.6919 5.1554 -2.6123 22 1 3.3854 6.1978 -2.6982 23 6 2.5782 4.0887 -2.5724 24 1 -0.3633 -1.0266 0.0482 25 1 -0.3633 0.5549 0.8651 26 1 -0.3635 0.4716 -0.9130 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8195 1.2978 1.9366 30 1 3.0949 2.8283 1.0705 31 1 2.4592 3.8752 4.5429 32 1 4.4992 3.3604 0.0919 33 1 4.6826 2.5416 -1.4911 34 1 5.1539 3.7836 -3.6360 35 1 5.7383 5.5250 -3.4740 36 1 2.7352 3.3439 -3.3527 37 1 1.5990 4.5551 -2.6805 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596891087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:07 Heat of formation + Delta-G solvation = -36.916649 kcal Electronic energy + Delta-G solvation = -17562.801954 eV Core-core repulsion = 14918.717259 eV Total energy + Delta-G solvation = -2644.084695 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38020 -39.39057 -36.93152 -34.67520 -33.22556 -31.37771 -29.18462 -29.00732 -25.59876 -24.72972 -23.27451 -21.58852 -20.60438 -19.63505 -18.63590 -17.96274 -17.23275 -16.90827 -16.29998 -15.88252 -15.20964 -14.50422 -14.41096 -14.22753 -14.03029 -13.82117 -13.61643 -13.19864 -13.02764 -12.80597 -12.59615 -12.47845 -12.27025 -12.17322 -12.03495 -11.95164 -11.71360 -11.52479 -10.89618 -10.73721 -10.57324 -10.38437 -9.46573 -8.19523 -6.32425 1.38731 1.42278 1.52062 1.72782 2.31725 2.44667 2.72505 3.10739 3.48304 3.72044 3.88027 4.01965 4.23399 4.29755 4.32195 4.42997 4.50891 4.54161 4.56700 4.73425 4.77951 4.78791 4.88203 4.96167 5.03006 5.07424 5.11662 5.25597 5.29376 5.33295 5.39315 5.45916 5.70400 5.88553 6.08202 6.59389 6.83071 7.30717 7.42523 8.86255 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.008901 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.436810 B = 3144.842173 C = 3956.577148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.114 3.886 3 N -0.599 5.599 4 C 0.245 3.755 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.518 3.482 14 O -0.595 6.595 15 C -0.109 4.109 16 H 0.091 0.909 17 C -0.076 4.076 18 C -0.173 4.173 19 H 0.123 0.877 20 C -0.137 4.137 21 C -0.165 4.165 22 H 0.125 0.875 23 C -0.075 4.075 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.017 0.983 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 1.446 -7.982 8.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.009 4.009 3 N -0.329 5.329 4 C 0.124 3.876 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.557 5.557 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.307 3.693 14 O -0.478 6.478 15 C -0.130 4.130 16 H 0.109 0.891 17 C -0.114 4.114 18 C -0.191 4.191 19 H 0.141 0.859 20 C -0.173 4.173 21 C -0.183 4.183 22 H 0.143 0.857 23 C -0.113 4.113 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.314 1.223 -8.307 9.027 hybrid contribution -0.943 0.283 0.982 1.390 sum 2.371 1.505 -7.325 7.845 Atomic orbital electron populations 1.22025 0.95878 1.02416 1.00971 1.21380 0.95036 0.82489 1.01981 1.48298 1.62861 1.14013 1.07688 1.19291 0.95678 0.92921 0.79679 1.21731 0.94795 1.35729 1.05878 0.92935 1.25600 0.98694 0.96227 0.97279 1.70005 1.24920 1.42927 1.17849 0.85589 0.79942 0.78295 0.78356 1.19804 1.20330 1.20329 1.20780 0.77668 0.88174 0.82667 1.90540 1.53084 1.70968 1.33170 1.22403 0.97674 0.92804 1.00101 0.89055 1.21798 0.91426 0.97180 1.01010 1.23600 1.04964 0.98454 0.92098 0.85879 1.23536 0.96737 1.03368 0.93709 1.23272 0.89788 0.99675 1.05558 0.85713 1.21755 0.98400 0.96635 0.94482 0.89775 0.93219 0.94464 0.91223 0.89994 0.96492 0.93723 0.92376 0.91105 0.91873 0.89261 0.85845 0.91362 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 10.20 71.98 0.73 -4.87 16 2 C 0.11 4.31 6.08 86.38 0.53 4.84 16 3 N -0.60 -25.91 2.47 -826.14 -2.04 -27.95 16 4 C 0.24 11.74 4.92 85.63 0.42 12.16 16 5 C -0.54 -28.31 9.06 25.60 0.23 -28.08 16 6 H 0.05 2.81 6.81 -2.91 -0.02 2.79 16 7 C 0.02 1.17 5.46 84.65 0.46 1.63 16 8 N -0.92 -50.08 13.29 21.45 0.28 -49.80 16 9 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.52 22.22 6.93 87.66 0.61 22.82 16 14 O -0.59 -27.39 15.38 -3.02 -0.05 -27.44 16 15 C -0.11 -4.10 2.25 -10.25 -0.02 -4.12 16 16 H 0.09 3.82 7.53 -2.38 -0.02 3.80 16 17 C -0.08 -2.54 5.66 31.67 0.18 -2.36 16 18 C -0.17 -4.68 7.04 -9.22 -0.06 -4.74 16 19 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 20 C -0.14 -3.04 10.21 31.44 0.32 -2.71 16 21 C -0.16 -4.30 6.85 -10.07 -0.07 -4.36 16 22 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 23 C -0.07 -2.43 5.77 31.67 0.18 -2.24 16 24 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 25 H 0.05 1.99 6.78 -2.38 -0.02 1.97 16 26 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.07 2.53 7.65 -2.39 -0.02 2.51 16 28 H 0.08 2.89 7.89 -2.39 -0.02 2.87 16 29 H 0.02 0.86 7.95 -2.38 -0.02 0.84 16 30 H 0.04 2.17 4.49 -2.39 -0.01 2.16 16 31 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.07 2.54 6.49 -2.39 -0.02 2.52 16 33 H 0.06 2.08 8.04 -2.39 -0.02 2.07 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.34 7.32 -2.38 -0.02 2.33 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -59.05 298.67 4.77 -54.27 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.04 Total: 18.96 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 3.51 Total: -12.04 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.75 Total: -77.75 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -59.05 4.77 -54.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.355 kcal (2) G-P(sol) polarization free energy of solvation -59.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds