Wall clock time and date at job start Mon Mar 30 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00209 * 2 1 4 4 C 1.50696 * 109.47458 * 270.00156 * 3 2 1 5 5 H 1.08004 * 119.99811 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00195 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00315 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46938 * 90.00075 * 8 6 4 10 10 H 1.48495 * 109.47488 * 210.00136 * 8 6 4 11 11 H 1.48496 * 109.47165 * 330.00572 * 8 6 4 12 12 C 1.34784 * 119.99840 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99882 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99549 * 359.97438 * 12 2 1 15 15 H 1.09000 * 109.24521 * 60.34991 * 14 12 2 16 16 C 1.52875 * 109.35590 * 300.69433 * 14 12 2 17 17 C 1.53302 * 108.57905 * 185.27239 * 16 14 12 18 18 C 1.52879 * 108.59228 * 74.44086 * 17 16 14 19 19 C 1.52068 * 110.51714 * 305.11532 * 18 17 16 20 20 H 1.08989 * 114.64338 * 166.84164 * 19 18 17 21 21 C 1.52314 * 119.83399 * 310.44554 * 19 18 17 22 22 C 1.52069 * 120.01907 * 21.69178 * 19 18 17 23 23 H 1.09003 * 117.25522 * 144.43660 * 22 19 18 24 24 H 1.08995 * 109.46779 * 269.99797 * 1 2 3 25 25 H 1.08999 * 109.46839 * 29.99171 * 1 2 3 26 26 H 1.08993 * 109.47469 * 149.99872 * 1 2 3 27 27 H 1.09000 * 109.47090 * 30.00355 * 3 2 1 28 28 H 1.09006 * 109.47155 * 150.00058 * 3 2 1 29 29 H 0.96993 * 120.00666 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.61895 * 304.99706 * 16 14 12 31 31 H 1.08996 * 109.62189 * 65.55032 * 16 14 12 32 32 H 1.08994 * 109.62378 * 194.17649 * 17 16 14 33 33 H 1.09008 * 109.61984 * 314.71213 * 17 16 14 34 34 H 1.09003 * 109.26392 * 65.38226 * 18 17 16 35 35 H 1.09001 * 109.26604 * 184.87785 * 18 17 16 36 36 H 1.08997 * 117.54063 * 2.44435 * 21 19 18 37 37 H 1.09003 * 117.53458 * 217.19385 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3458 3.2574 -2.9125 8 14 3.7340 3.9286 -0.2528 9 1 5.1071 3.5067 0.1238 10 1 3.7500 5.3552 -0.6645 11 1 2.8276 3.7594 0.9112 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.7644 -2.5287 -0.8946 16 6 0.4948 -2.5432 1.2401 17 6 -0.1612 -3.9278 1.2921 18 6 0.8903 -4.9493 1.7258 19 6 2.1034 -4.8868 0.8110 20 1 2.9803 -5.4170 1.1821 21 6 1.9153 -4.9181 -0.7002 22 6 2.3799 -3.6312 -0.0011 23 1 3.4231 -3.3515 -0.1483 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 3.8226 4.0832 -3.0898 30 1 1.0997 -2.3910 2.1340 31 1 -0.2763 -1.7750 1.1815 32 1 -0.9803 -3.9180 2.0110 33 1 -0.5408 -4.1903 0.3045 34 1 1.1997 -4.7346 2.7487 35 1 0.4592 -5.9495 1.6830 36 1 0.8941 -4.9446 -1.0805 37 1 2.6515 -5.4661 -1.2883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596912656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:18 Heat of formation + Delta-G solvation = -17.433910 kcal Electronic energy + Delta-G solvation = -17403.474510 eV Core-core repulsion = 14760.234651 eV Total energy + Delta-G solvation = -2643.239860 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22554 -38.09659 -35.00725 -33.20604 -32.41043 -31.07598 -28.24364 -26.22813 -24.91665 -22.60817 -22.57696 -20.93454 -18.79912 -18.26502 -16.91453 -16.61451 -15.92451 -15.11280 -14.73818 -14.20413 -13.91962 -13.66303 -13.48274 -13.12077 -12.70485 -12.45294 -12.23625 -11.97126 -11.80748 -11.54496 -11.33968 -11.06834 -10.94615 -10.82756 -10.50040 -10.23624 -10.09826 -9.76125 -9.58061 -9.51995 -8.86665 -8.57439 -7.66637 -6.07185 -4.05792 3.30267 3.36257 3.37986 3.38846 3.84962 3.86781 4.41008 4.62650 4.76423 4.78163 5.02743 5.13049 5.23391 5.23876 5.34004 5.46513 5.47907 5.56291 5.66629 5.79033 5.81945 5.86141 5.93550 6.02079 6.09142 6.12553 6.20775 6.28629 6.34818 6.55628 6.73093 6.97339 7.37560 7.63065 8.29289 8.49100 8.95119 9.03381 9.53281 11.06326 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042147 B = 0.006143 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.181939 B = 4557.276028 C = 4740.421943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.513 3.487 13 O -0.540 6.540 14 C -0.074 4.074 15 H 0.094 0.906 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.087 4.087 19 C -0.142 4.142 20 H 0.096 0.904 21 C -0.186 4.186 22 C -0.128 4.128 23 H 0.122 0.878 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -14.023 9.034 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.329 5.329 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.300 3.700 13 O -0.417 6.417 14 C -0.095 4.095 15 H 0.112 0.888 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.125 4.125 19 C -0.160 4.160 20 H 0.114 0.886 21 C -0.223 4.223 22 C -0.147 4.147 23 H 0.140 0.860 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.142 -13.844 8.918 18.371 hybrid contribution 0.363 0.666 0.406 0.861 sum -7.778 -13.178 9.324 17.919 Atomic orbital electron populations 1.21810 0.81235 1.02881 1.00259 1.47781 1.06122 1.07071 1.71927 1.19656 0.92460 0.80148 0.98307 1.21343 1.36879 1.07125 0.91316 0.90808 1.24862 0.95250 0.97361 0.95577 1.69895 1.41553 1.23578 1.18664 0.86840 0.80135 0.79716 0.82938 1.19912 1.21071 1.19078 1.20257 0.87978 0.85011 0.76760 1.90625 1.14078 1.86968 1.50032 1.20729 0.96444 0.92414 0.99916 0.88846 1.21837 0.98895 0.97772 0.97385 1.21609 0.97620 0.94835 1.01624 1.20843 0.94160 0.98975 0.98496 1.21820 0.99877 1.01373 0.92915 0.88590 1.23129 1.02185 1.02336 0.94665 1.22140 1.01044 0.87654 1.03841 0.86016 0.93408 0.90747 0.91927 0.95283 0.94602 0.92580 0.91315 0.90115 0.91592 0.91735 0.91588 0.91819 0.88973 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 8.78 59.85 0.53 1.79 16 2 N -0.60 -12.51 2.86 -182.96 -0.52 -13.03 16 3 C 0.21 5.36 4.23 -5.20 -0.02 5.34 16 4 C -0.53 -15.44 9.94 -34.44 -0.34 -15.79 16 5 H 0.07 2.37 8.06 -52.48 -0.42 1.94 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 8 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.51 10.72 7.07 -10.98 -0.08 10.64 16 13 O -0.54 -13.62 14.90 5.56 0.08 -13.54 16 14 C -0.07 -1.13 1.67 -91.98 -0.15 -1.28 16 15 H 0.09 1.35 7.33 -51.93 -0.38 0.97 16 16 C -0.12 -1.48 4.75 -26.64 -0.13 -1.61 16 17 C -0.12 -1.16 5.70 -26.64 -0.15 -1.31 16 18 C -0.09 -0.86 5.93 -27.27 -0.16 -1.03 16 19 C -0.14 -1.67 6.00 -91.92 -0.55 -2.22 16 20 H 0.10 1.08 8.14 -51.94 -0.42 0.66 16 21 C -0.19 -2.23 9.66 -26.74 -0.26 -2.49 16 22 C -0.13 -1.92 5.48 -90.90 -0.50 -2.42 16 23 H 0.12 2.17 6.79 -51.93 -0.35 1.82 16 24 H 0.05 0.61 7.07 -51.93 -0.37 0.24 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.81 5.92 -51.93 -0.31 0.51 16 27 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 28 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 31 H 0.08 0.90 4.62 -51.93 -0.24 0.66 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.61 7.11 -51.92 -0.37 0.24 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.01 7.26 -51.93 -0.38 0.63 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -33.70 287.90 -7.57 -41.28 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.66 Total: -0.61 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.92 Total: -8.35 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.25 Total: -40.30 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.70 -7.57 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.844 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds