Wall clock time and date at job start Mon Mar 30 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00209 * 2 1 4 4 C 1.50696 * 109.47458 * 270.00156 * 3 2 1 5 5 H 1.08004 * 119.99811 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00195 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00315 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46938 * 90.00075 * 8 6 4 10 10 H 1.48495 * 109.47488 * 210.00136 * 8 6 4 11 11 H 1.48496 * 109.47165 * 330.00572 * 8 6 4 12 12 C 1.34784 * 119.99840 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99882 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99549 * 359.97438 * 12 2 1 15 15 H 1.09000 * 109.24521 * 60.34991 * 14 12 2 16 16 C 1.52875 * 109.35590 * 300.69433 * 14 12 2 17 17 C 1.53302 * 108.57905 * 185.27239 * 16 14 12 18 18 C 1.52879 * 108.59228 * 74.44086 * 17 16 14 19 19 C 1.52068 * 110.51714 * 305.11532 * 18 17 16 20 20 H 1.08989 * 114.64338 * 166.84164 * 19 18 17 21 21 C 1.52314 * 119.83399 * 310.44554 * 19 18 17 22 22 C 1.52069 * 120.01907 * 21.69178 * 19 18 17 23 23 H 1.09003 * 117.25522 * 144.43660 * 22 19 18 24 24 H 1.08995 * 109.46779 * 269.99797 * 1 2 3 25 25 H 1.08999 * 109.46839 * 29.99171 * 1 2 3 26 26 H 1.08993 * 109.47469 * 149.99872 * 1 2 3 27 27 H 1.09000 * 109.47090 * 30.00355 * 3 2 1 28 28 H 1.09006 * 109.47155 * 150.00058 * 3 2 1 29 29 H 0.96993 * 120.00666 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.61895 * 304.99706 * 16 14 12 31 31 H 1.08996 * 109.62189 * 65.55032 * 16 14 12 32 32 H 1.08994 * 109.62378 * 194.17649 * 17 16 14 33 33 H 1.09008 * 109.61984 * 314.71213 * 17 16 14 34 34 H 1.09003 * 109.26392 * 65.38226 * 18 17 16 35 35 H 1.09001 * 109.26604 * 184.87785 * 18 17 16 36 36 H 1.08997 * 117.54063 * 2.44435 * 21 19 18 37 37 H 1.09003 * 117.53458 * 217.19385 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3458 3.2574 -2.9125 8 14 3.7340 3.9286 -0.2528 9 1 5.1071 3.5067 0.1238 10 1 3.7500 5.3552 -0.6645 11 1 2.8276 3.7594 0.9112 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.7644 -2.5287 -0.8946 16 6 0.4948 -2.5432 1.2401 17 6 -0.1612 -3.9278 1.2921 18 6 0.8903 -4.9493 1.7258 19 6 2.1034 -4.8868 0.8110 20 1 2.9803 -5.4170 1.1821 21 6 1.9153 -4.9181 -0.7002 22 6 2.3799 -3.6312 -0.0011 23 1 3.4231 -3.3515 -0.1483 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 3.8226 4.0832 -3.0898 30 1 1.0997 -2.3910 2.1340 31 1 -0.2763 -1.7750 1.1815 32 1 -0.9803 -3.9180 2.0110 33 1 -0.5408 -4.1903 0.3045 34 1 1.1997 -4.7346 2.7487 35 1 0.4592 -5.9495 1.6830 36 1 0.8941 -4.9446 -1.0805 37 1 2.6515 -5.4661 -1.2883 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596912656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:18 Heat of formation + Delta-G solvation = -39.550752 kcal Electronic energy + Delta-G solvation = -17404.433569 eV Core-core repulsion = 14760.234651 eV Total energy + Delta-G solvation = -2644.198918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51191 -39.45129 -36.73093 -34.89668 -33.89895 -32.28264 -30.09106 -27.62817 -26.11390 -24.40425 -23.51934 -22.14518 -20.23608 -19.33914 -19.12121 -18.01053 -17.38901 -16.63578 -16.43925 -15.52634 -15.20895 -14.88989 -14.66365 -14.55515 -14.26904 -13.74589 -13.68997 -13.60706 -13.13441 -12.92433 -12.76580 -12.48421 -12.34063 -12.05477 -11.99905 -11.78810 -11.76897 -11.15703 -10.85892 -10.76831 -10.59320 -10.44520 -9.39976 -8.36436 -6.41841 1.30533 1.35062 1.43630 1.79588 2.28930 2.31690 2.85816 2.97835 3.55840 3.65529 3.87045 4.02415 4.18805 4.25881 4.32278 4.38131 4.46768 4.54348 4.63233 4.67046 4.81111 4.87186 4.91233 4.93892 4.95135 5.13528 5.20673 5.23302 5.30829 5.37604 5.43402 5.44815 5.50779 5.61936 6.21872 6.59195 6.69644 7.19062 7.41696 8.80756 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042147 B = 0.006143 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.181939 B = 4557.276028 C = 4740.421943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.237 1.237 12 C 0.500 3.500 13 O -0.598 6.598 14 C -0.059 4.059 15 H 0.105 0.895 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.088 4.088 19 C -0.125 4.125 20 H 0.097 0.903 21 C -0.172 4.172 22 C -0.167 4.167 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.015 0.985 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 -15.081 11.266 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.160 1.160 12 C 0.289 3.711 13 O -0.480 6.480 14 C -0.080 4.080 15 H 0.123 0.877 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.125 4.125 19 C -0.143 4.143 20 H 0.115 0.885 21 C -0.209 4.209 22 C -0.186 4.186 23 H 0.097 0.903 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.129 0.871 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.620 -14.923 11.159 21.448 hybrid contribution 1.142 0.936 -0.395 1.529 sum -9.479 -13.987 10.764 20.033 Atomic orbital electron populations 1.22161 0.77721 1.03887 1.02965 1.47919 1.08410 1.05792 1.71510 1.19337 0.92702 0.82706 0.95264 1.21570 1.36910 1.06783 0.92398 0.95538 1.25879 0.95219 0.98948 0.98726 1.70046 1.42687 1.24523 1.21329 0.85689 0.79497 0.77784 0.79823 1.20358 1.19724 1.15983 1.21395 0.87762 0.86768 0.75177 1.90587 1.16875 1.87985 1.52508 1.20720 0.96312 0.88834 1.02162 0.87732 1.21869 0.98405 1.00368 0.94811 1.21616 0.97877 0.92559 1.03000 1.20927 0.93214 1.00475 0.97914 1.21968 1.01037 0.98050 0.93261 0.88479 1.23223 1.03042 0.99395 0.95207 1.21989 0.98970 0.89182 1.08415 0.90320 0.89637 0.91597 0.89220 0.92956 0.96663 0.92205 0.92576 0.88552 0.88953 0.90829 0.91258 0.89425 0.87112 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.13 8.78 127.77 1.12 3.25 16 2 N -0.61 -25.34 2.86 -851.14 -2.43 -27.78 16 3 C 0.22 11.18 4.23 85.63 0.36 11.55 16 4 C -0.54 -32.61 9.94 25.60 0.25 -32.36 16 5 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.95 -60.94 13.96 21.45 0.30 -60.65 16 8 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 12 C 0.50 21.38 7.07 87.66 0.62 22.00 16 13 O -0.60 -32.03 14.90 -3.01 -0.04 -32.07 16 14 C -0.06 -1.77 1.67 -11.67 -0.02 -1.79 16 15 H 0.10 2.84 7.33 -2.39 -0.02 2.82 16 16 C -0.12 -2.51 4.75 30.65 0.15 -2.36 16 17 C -0.11 -1.69 5.70 30.66 0.17 -1.51 16 18 C -0.09 -1.40 5.93 30.25 0.18 -1.22 16 19 C -0.12 -2.72 6.00 -11.63 -0.07 -2.79 16 20 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 21 C -0.17 -3.83 9.66 30.59 0.30 -3.53 16 22 C -0.17 -5.01 5.48 -10.98 -0.06 -5.07 16 23 H 0.08 3.05 6.79 -2.39 -0.02 3.03 16 24 H 0.09 1.84 7.07 -2.39 -0.02 1.82 16 25 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 26 H 0.09 2.07 5.92 -2.39 -0.01 2.05 16 27 H 0.05 2.38 7.13 -2.39 -0.02 2.37 16 28 H 0.02 0.83 6.85 -2.38 -0.02 0.81 16 29 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 30 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 31 H 0.10 1.73 4.62 -2.39 -0.01 1.72 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.01 7.11 -2.38 -0.02 0.99 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 2.06 7.26 -2.39 -0.02 2.04 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -78.84 287.90 4.17 -74.67 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.99 Total: 11.34 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 3.47 Total: -12.76 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -2.13 Total: -88.42 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.04 Total: -32.07 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -78.84 4.17 -74.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596912656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.123 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds