Wall clock time and date at job start Mon Mar 30 2020 03:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46627 * 2 1 4 4 C 1.50701 * 109.47288 * 240.00169 * 2 1 3 5 5 H 1.08002 * 119.99637 * 275.00103 * 4 2 1 6 6 C 1.37869 * 119.99938 * 95.00026 * 4 2 1 7 7 N 1.31515 * 120.00070 * 184.91852 * 6 4 2 8 8 Si 1.86806 * 120.00175 * 4.91610 * 6 4 2 9 9 H 1.48499 * 109.46877 * 84.83458 * 8 6 4 10 10 H 1.48505 * 109.46967 * 204.83208 * 8 6 4 11 11 H 1.48495 * 109.46705 * 324.83184 * 8 6 4 12 12 N 1.46497 * 109.47251 * 119.99860 * 2 1 3 13 13 C 1.34776 * 120.00032 * 275.00283 * 12 2 1 14 14 O 1.21276 * 120.00320 * 359.97438 * 13 12 2 15 15 C 1.50707 * 120.00107 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.23518 * 60.35053 * 15 13 12 17 17 C 1.52878 * 109.35821 * 300.69891 * 15 13 12 18 18 C 1.53300 * 108.57830 * 185.26821 * 17 15 13 19 19 C 1.53155 * 108.38179 * 74.64782 * 18 17 15 20 20 C 1.52076 * 110.35803 * 304.63131 * 19 18 17 21 21 H 1.09004 * 114.63559 * 167.43364 * 20 19 18 22 22 C 1.52297 * 119.22798 * 311.29080 * 20 19 18 23 23 C 1.52067 * 120.01977 * 22.29069 * 20 19 18 24 24 H 1.09001 * 117.25445 * 144.08130 * 23 20 19 25 25 H 1.09006 * 109.46762 * 175.03982 * 1 2 3 26 26 H 1.09000 * 109.47020 * 295.03593 * 1 2 3 27 27 H 1.08996 * 109.47111 * 55.03932 * 1 2 3 28 28 H 0.97003 * 120.00471 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00317 * 95.00062 * 12 2 1 30 30 H 1.08995 * 109.61510 * 304.99359 * 17 15 13 31 31 H 1.08992 * 109.61804 * 65.53649 * 17 15 13 32 32 H 1.09000 * 109.61265 * 194.16979 * 18 17 15 33 33 H 1.08993 * 109.61745 * 314.52887 * 18 17 15 34 34 H 1.09003 * 107.87841 * 185.32261 * 19 18 17 35 35 H 1.08995 * 110.80431 * 65.79925 * 19 18 17 36 36 H 1.09009 * 117.53807 * 217.43374 * 22 20 19 37 37 H 1.08992 * 117.54491 * 2.68345 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.1356 -1.7854 -1.2290 6 6 2.3604 0.0122 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3136 1.8792 -2.3173 9 1 3.5992 2.3949 -1.7821 10 1 2.1059 2.3992 -3.6927 11 1 1.1987 2.3274 -1.4449 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6490 -0.7287 3.5878 16 1 3.6505 -1.1142 3.3966 17 6 1.7131 -1.8914 3.9187 18 6 2.1626 -2.5184 5.2434 19 6 1.7498 -1.5841 6.3846 20 6 2.3128 -0.1898 6.1568 21 1 1.8921 0.5812 6.8023 22 6 3.7856 -0.0312 5.8033 23 6 2.6994 0.2548 4.7549 24 1 2.5204 1.2981 4.4950 25 1 -0.3633 -1.0239 -0.0889 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 0.5888 -0.8422 28 1 2.9371 -0.1047 -4.2554 29 1 2.2492 -1.6317 1.1527 30 1 0.6920 -1.5228 4.0161 31 1 1.7616 -2.6374 3.1256 32 1 1.6796 -3.4870 5.3723 33 1 3.2449 -2.6469 5.2388 34 1 2.1557 -1.9887 7.3118 35 1 0.6643 -1.5253 6.4634 36 1 4.3161 0.8226 6.2251 37 1 4.3757 -0.9396 5.6827 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597000407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:23 Heat of formation + Delta-G solvation = -38.591011 kcal Electronic energy + Delta-G solvation = -17239.737754 eV Core-core repulsion = 14595.580453 eV Total energy + Delta-G solvation = -2644.157300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14368 -38.13876 -34.84166 -33.22367 -32.25871 -31.22911 -29.24613 -25.34884 -25.15034 -22.65016 -21.89659 -20.53784 -19.52587 -18.37048 -17.61138 -16.42359 -15.56980 -15.21076 -14.55466 -14.31203 -13.91507 -13.72276 -13.24515 -13.10649 -12.75153 -12.50888 -12.25246 -12.00282 -11.50215 -11.34836 -11.22558 -11.08324 -10.95720 -10.79813 -10.55269 -10.28663 -9.86718 -9.82480 -9.62169 -9.18450 -8.98581 -8.68476 -8.04130 -6.22682 -4.26129 3.26513 3.33538 3.34894 3.42470 3.81404 4.00018 4.33534 4.59704 4.76075 4.86235 4.99898 5.10535 5.17261 5.19523 5.41183 5.44895 5.52490 5.63420 5.76979 5.80870 5.91753 6.01087 6.08835 6.14230 6.26958 6.30721 6.37121 6.48473 6.55817 6.70359 6.96901 7.21643 7.40957 7.59496 8.16517 8.61460 8.78212 9.04435 9.39933 10.89116 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.006056 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.476407 B = 4622.776099 C = 4842.755777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.703 5.703 13 C 0.507 3.493 14 O -0.559 6.559 15 C -0.078 4.078 16 H 0.094 0.906 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.088 4.088 20 C -0.141 4.141 21 H 0.097 0.903 22 C -0.187 4.187 23 C -0.128 4.128 24 H 0.122 0.878 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.267 0.733 29 H 0.392 0.608 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 -2.988 17.167 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.351 5.351 13 C 0.292 3.708 14 O -0.439 6.439 15 C -0.100 4.100 16 H 0.112 0.888 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.125 4.125 20 C -0.159 4.159 21 H 0.115 0.885 22 C -0.224 4.224 23 C -0.146 4.146 24 H 0.140 0.860 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.226 0.774 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.467 -2.125 16.957 17.096 hybrid contribution 0.231 0.543 -0.197 0.623 sum -0.236 -1.582 16.760 16.836 Atomic orbital electron populations 1.22211 0.98677 1.00497 0.99176 1.19114 0.90878 0.94326 0.82920 0.93322 1.21019 1.45148 0.95611 0.94990 0.90367 1.24938 0.93635 0.98610 0.95153 1.69884 1.44876 1.36172 1.01694 0.86892 0.79798 0.85899 0.77298 1.19884 1.21198 1.18504 1.46605 1.64901 1.13809 1.09813 1.20439 0.78215 0.87398 0.84767 1.90598 1.51777 1.16378 1.85162 1.20819 1.00718 0.95609 0.92817 0.88759 1.21552 0.99369 0.96230 0.97617 1.21666 1.01292 0.98243 0.94557 1.20903 1.00465 0.92878 0.98295 1.21833 0.97493 0.98341 0.98267 0.88514 1.23147 0.91458 1.02922 1.04907 1.22147 1.03024 1.01028 0.88447 0.85992 0.93457 0.95259 0.93012 0.92266 0.77419 0.91141 0.91091 0.91537 0.91597 0.91989 0.91333 0.89196 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.47 37.16 0.35 -2.92 16 2 C 0.23 5.55 2.22 -69.08 -0.15 5.40 16 3 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 4 C -0.53 -14.32 9.05 -34.44 -0.31 -14.64 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 8 Si 0.87 21.83 26.99 -169.99 -4.59 17.24 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.26 -6.44 6.82 56.52 0.39 -6.05 16 12 N -0.70 -14.28 4.96 -54.93 -0.27 -14.55 16 13 C 0.51 9.86 7.12 -10.98 -0.08 9.78 16 14 O -0.56 -12.97 14.98 5.56 0.08 -12.89 16 15 C -0.08 -1.13 2.44 -91.98 -0.22 -1.36 16 16 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 17 C -0.11 -1.33 5.04 -26.64 -0.13 -1.47 16 18 C -0.12 -1.17 5.71 -26.50 -0.15 -1.33 16 19 C -0.09 -0.85 5.93 -27.12 -0.16 -1.02 16 20 C -0.14 -1.59 6.04 -91.92 -0.55 -2.15 16 21 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.19 -2.11 9.58 -26.75 -0.26 -2.37 16 23 C -0.13 -1.79 5.53 -90.91 -0.50 -2.30 16 24 H 0.12 2.02 6.79 -51.93 -0.35 1.67 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.39 7.02 8.07 -40.82 -0.33 6.69 16 30 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 31 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.62 7.01 -51.93 -0.36 0.26 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.09 0.97 7.15 -51.93 -0.37 0.60 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -30.83 294.52 -7.69 -38.52 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.85 Total: 4.94 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.27 Total: -12.17 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.50 Total: -40.08 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.24 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.83 -7.69 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.067 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds