Wall clock time and date at job start Mon Mar 30 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46627 * 2 1 4 4 C 1.50701 * 109.47288 * 240.00169 * 2 1 3 5 5 H 1.08002 * 119.99637 * 275.00103 * 4 2 1 6 6 C 1.37869 * 119.99938 * 95.00026 * 4 2 1 7 7 N 1.31515 * 120.00070 * 184.91852 * 6 4 2 8 8 Si 1.86806 * 120.00175 * 4.91610 * 6 4 2 9 9 H 1.48499 * 109.46877 * 84.83458 * 8 6 4 10 10 H 1.48505 * 109.46967 * 204.83208 * 8 6 4 11 11 H 1.48495 * 109.46705 * 324.83184 * 8 6 4 12 12 N 1.46497 * 109.47251 * 119.99860 * 2 1 3 13 13 C 1.34776 * 120.00032 * 275.00283 * 12 2 1 14 14 O 1.21276 * 120.00320 * 359.97438 * 13 12 2 15 15 C 1.50707 * 120.00107 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.23518 * 60.35053 * 15 13 12 17 17 C 1.52878 * 109.35821 * 300.69891 * 15 13 12 18 18 C 1.53300 * 108.57830 * 185.26821 * 17 15 13 19 19 C 1.53155 * 108.38179 * 74.64782 * 18 17 15 20 20 C 1.52076 * 110.35803 * 304.63131 * 19 18 17 21 21 H 1.09004 * 114.63559 * 167.43364 * 20 19 18 22 22 C 1.52297 * 119.22798 * 311.29080 * 20 19 18 23 23 C 1.52067 * 120.01977 * 22.29069 * 20 19 18 24 24 H 1.09001 * 117.25445 * 144.08130 * 23 20 19 25 25 H 1.09006 * 109.46762 * 175.03982 * 1 2 3 26 26 H 1.09000 * 109.47020 * 295.03593 * 1 2 3 27 27 H 1.08996 * 109.47111 * 55.03932 * 1 2 3 28 28 H 0.97003 * 120.00471 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00317 * 95.00062 * 12 2 1 30 30 H 1.08995 * 109.61510 * 304.99359 * 17 15 13 31 31 H 1.08992 * 109.61804 * 65.53649 * 17 15 13 32 32 H 1.09000 * 109.61265 * 194.16979 * 18 17 15 33 33 H 1.08993 * 109.61745 * 314.52887 * 18 17 15 34 34 H 1.09003 * 107.87841 * 185.32261 * 19 18 17 35 35 H 1.08995 * 110.80431 * 65.79925 * 19 18 17 36 36 H 1.09009 * 117.53807 * 217.43374 * 22 20 19 37 37 H 1.08992 * 117.54491 * 2.68345 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.1356 -1.7854 -1.2290 6 6 2.3604 0.0122 -2.3580 7 7 2.7060 -0.6130 -3.4622 8 14 2.3136 1.8792 -2.3173 9 1 3.5992 2.3949 -1.7821 10 1 2.1059 2.3992 -3.6927 11 1 1.1987 2.3274 -1.4449 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6490 -0.7287 3.5878 16 1 3.6505 -1.1142 3.3966 17 6 1.7131 -1.8914 3.9187 18 6 2.1626 -2.5184 5.2434 19 6 1.7498 -1.5841 6.3846 20 6 2.3128 -0.1898 6.1568 21 1 1.8921 0.5812 6.8023 22 6 3.7856 -0.0312 5.8033 23 6 2.6994 0.2548 4.7549 24 1 2.5204 1.2981 4.4950 25 1 -0.3633 -1.0239 -0.0889 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 0.5888 -0.8422 28 1 2.9371 -0.1047 -4.2554 29 1 2.2492 -1.6317 1.1527 30 1 0.6920 -1.5228 4.0161 31 1 1.7616 -2.6374 3.1256 32 1 1.6796 -3.4870 5.3723 33 1 3.2449 -2.6469 5.2388 34 1 2.1557 -1.9887 7.3118 35 1 0.6643 -1.5253 6.4634 36 1 4.3161 0.8226 6.2251 37 1 4.3757 -0.9396 5.6827 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597000407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:22 Heat of formation + Delta-G solvation = -57.952879 kcal Electronic energy + Delta-G solvation = -17240.577347 eV Core-core repulsion = 14595.580453 eV Total energy + Delta-G solvation = -2644.996894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37888 -39.50001 -36.69662 -34.56563 -33.91786 -32.46978 -30.83927 -27.35086 -26.20007 -23.55164 -23.36064 -21.88104 -21.17968 -19.46420 -19.21590 -18.03476 -17.22997 -16.69886 -16.03829 -15.62496 -15.20298 -14.83324 -14.68261 -14.49076 -14.34795 -14.17568 -13.66562 -13.25917 -13.06239 -12.89232 -12.79382 -12.47830 -12.38228 -12.09407 -11.89638 -11.82916 -11.27188 -11.20624 -10.87056 -10.77956 -10.59163 -10.46567 -9.80003 -8.40702 -6.46471 1.26790 1.31347 1.42160 1.79803 2.25103 2.46069 2.87244 3.02125 3.65177 3.76334 3.87887 4.03780 4.23411 4.27950 4.34729 4.44903 4.49795 4.54283 4.68901 4.73060 4.81536 4.89436 4.94023 5.07438 5.08566 5.21117 5.22043 5.29410 5.34810 5.39404 5.43671 5.44541 5.49846 5.76381 6.11928 6.58259 6.92248 7.19860 7.48473 8.74288 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041198 B = 0.006056 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.476407 B = 4622.776099 C = 4842.755777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.232 3.768 3 H 0.026 0.974 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.925 3.075 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.259 1.259 12 N -0.702 5.702 13 C 0.503 3.497 14 O -0.600 6.600 15 C -0.066 4.066 16 H 0.109 0.891 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.129 4.129 21 H 0.100 0.900 22 C -0.171 4.171 23 C -0.161 4.161 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.271 0.729 29 H 0.405 0.595 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -3.831 19.278 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.128 3.872 3 H 0.044 0.956 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.750 3.250 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.184 1.184 12 N -0.351 5.351 13 C 0.290 3.710 14 O -0.482 6.482 15 C -0.087 4.087 16 H 0.127 0.873 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.126 4.126 20 C -0.148 4.148 21 H 0.118 0.882 22 C -0.208 4.208 23 C -0.180 4.180 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.240 0.760 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.334 -2.991 19.088 19.324 hybrid contribution 0.191 0.786 -0.807 1.142 sum -0.143 -2.205 18.281 18.414 Atomic orbital electron populations 1.22098 0.97188 1.01278 0.99273 1.18878 0.91964 0.93027 0.83304 0.95569 1.21187 1.44285 0.94854 0.96044 0.92332 1.25570 0.93798 1.02192 0.95014 1.69970 1.46648 1.37664 1.02429 0.86084 0.79546 0.81689 0.77668 1.20130 1.20043 1.18357 1.46374 1.65131 1.14370 1.09229 1.21329 0.77008 0.87003 0.85614 1.90578 1.53365 1.18387 1.85871 1.20808 1.01623 0.96003 0.90230 0.87329 1.21582 0.98052 0.95368 0.99607 1.21667 1.02026 0.98801 0.92679 1.20964 1.00689 0.91677 0.99256 1.21967 0.97577 0.99524 0.95691 0.88191 1.23235 0.91516 1.03688 1.02373 1.21997 1.06972 0.99257 0.89765 0.89391 0.92207 0.94660 0.93494 0.91988 0.75957 0.92403 0.90367 0.89602 0.90674 0.89794 0.91127 0.88597 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.13 9.47 71.98 0.68 -5.45 16 2 C 0.23 11.19 2.22 44.25 0.10 11.29 16 3 H 0.03 1.40 4.73 -2.39 -0.01 1.39 16 4 C -0.53 -28.60 9.05 25.60 0.23 -28.37 16 5 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 6 C 0.03 1.97 5.47 84.65 0.46 2.44 16 7 N -0.93 -55.44 13.96 21.44 0.30 -55.14 16 8 Si 0.92 45.29 26.99 68.60 1.85 47.14 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.26 -12.52 6.82 99.48 0.68 -11.84 16 12 N -0.70 -28.24 4.96 -446.09 -2.21 -30.46 16 13 C 0.50 19.47 7.12 87.66 0.62 20.10 16 14 O -0.60 -28.28 14.98 -3.02 -0.05 -28.32 16 15 C -0.07 -1.81 2.44 -11.68 -0.03 -1.84 16 16 H 0.11 2.68 8.04 -2.39 -0.02 2.66 16 17 C -0.11 -2.38 5.04 30.65 0.15 -2.22 16 18 C -0.11 -1.81 5.71 30.75 0.18 -1.63 16 19 C -0.09 -1.40 5.93 30.34 0.18 -1.22 16 20 C -0.13 -2.61 6.04 -11.64 -0.07 -2.68 16 21 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 22 C -0.17 -3.42 9.58 30.58 0.29 -3.13 16 23 C -0.16 -4.36 5.53 -10.98 -0.06 -4.42 16 24 H 0.09 3.00 6.79 -2.39 -0.02 2.98 16 25 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.41 14.17 8.07 -92.71 -0.75 13.42 16 30 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 31 H 0.08 1.59 7.68 -2.39 -0.02 1.57 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.08 7.01 -2.39 -0.02 1.07 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.11 1.85 7.15 -2.39 -0.02 1.83 16 Total: -1.00 -66.79 294.52 2.91 -63.88 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.28 Total: 20.06 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 2.74 Total: -17.15 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.92 Total: -85.60 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.32 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -66.79 2.91 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.923 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds