Wall clock time and date at job start Mon Mar 30 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37101 * 119.99692 * 2 1 4 4 H 1.08000 * 119.99764 * 166.64945 * 3 2 1 5 5 C 1.38949 * 120.00199 * 346.65105 * 3 2 1 6 6 N 1.31409 * 119.99685 * 8.76070 * 5 3 2 7 7 Si 1.86797 * 119.99780 * 188.76628 * 5 3 2 8 8 H 1.48506 * 109.46991 * 89.99966 * 7 5 3 9 9 H 1.48503 * 109.46934 * 209.99667 * 7 5 3 10 10 H 1.48492 * 109.47249 * 329.99768 * 7 5 3 11 11 C 1.34775 * 120.00056 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99973 * 3.62310 * 11 2 1 13 13 C 1.50701 * 120.00110 * 183.62150 * 11 2 1 14 14 H 1.09003 * 109.47341 * 307.63872 * 13 11 2 15 15 C 1.52945 * 109.47282 * 67.65323 * 13 11 2 16 16 C 1.52946 * 109.82148 * 182.98275 * 15 13 11 17 17 C 1.53175 * 109.44936 * 297.01489 * 16 15 13 18 18 C 1.53150 * 108.88370 * 56.56375 * 17 16 15 19 19 C 1.52813 * 117.74727 * 160.38231 * 18 17 16 20 20 C 1.52928 * 117.67398 * 91.52694 * 18 17 16 21 21 C 1.53147 * 115.01054 * 306.06127 * 18 17 16 22 22 H 1.08998 * 109.46644 * 185.47606 * 1 2 3 23 23 H 1.09004 * 109.47389 * 305.47774 * 1 2 3 24 24 H 1.09004 * 109.46836 * 65.47712 * 1 2 3 25 25 H 0.97003 * 119.99746 * 179.97438 * 6 5 3 26 26 H 1.09004 * 109.41080 * 303.08649 * 15 13 11 27 27 H 1.08990 * 109.41736 * 62.94220 * 15 13 11 28 28 H 1.09000 * 109.47157 * 57.00830 * 16 15 13 29 29 H 1.09002 * 109.47114 * 177.01592 * 16 15 13 30 30 H 1.09003 * 109.56897 * 296.74039 * 17 16 15 31 31 H 1.08999 * 109.56882 * 176.38580 * 17 16 15 32 32 H 1.08996 * 117.50467 * 144.89315 * 19 18 17 33 33 H 1.09002 * 117.50643 * 359.87087 * 19 18 17 34 34 H 1.08998 * 117.50330 * 0.26293 * 20 18 17 35 35 H 1.09008 * 117.54389 * 215.18751 * 20 18 17 36 36 H 1.08996 * 109.56996 * 173.76248 * 21 18 17 37 37 H 1.09004 * 109.57052 * 294.00276 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2086 1.2000 0.2160 5 6 1.4839 2.3744 -0.2778 6 7 0.1731 2.3857 -0.3704 7 14 2.4510 3.9541 -0.5199 8 1 2.8017 4.1048 -1.9550 9 1 1.6260 5.1108 -0.0878 10 1 3.6941 3.9025 0.2907 11 6 2.1389 -1.1672 0.0005 12 8 1.5343 -2.2166 -0.0654 13 6 3.6437 -1.1685 0.0830 14 1 4.0505 -0.5162 -0.6898 15 6 4.0793 -0.6624 1.4589 16 6 5.6056 -0.5901 1.5256 17 6 6.1904 -1.9966 1.3639 18 6 5.6872 -2.5942 0.0466 19 6 6.4698 -3.7639 -0.5489 20 6 6.5435 -2.3821 -1.2025 21 6 4.1653 -2.5936 -0.1250 22 1 -0.3632 -1.0230 0.0981 23 1 -0.3634 0.5965 0.8369 24 1 -0.3633 0.4266 -0.9350 25 1 -0.2923 3.2145 -0.5640 26 1 3.6619 0.3301 1.6288 27 1 3.7161 -1.3445 2.2275 28 1 5.9743 0.0510 0.7249 29 1 5.9082 -0.1792 2.4887 30 1 5.8690 -2.6235 2.1956 31 1 7.2788 -1.9397 1.3467 32 1 5.9028 -4.5366 -1.0680 33 1 7.3483 -4.1108 -0.0048 34 1 7.4701 -1.8198 -1.0881 35 1 6.0252 -2.2460 -2.1518 36 1 3.9111 -2.9325 -1.1292 37 1 3.7147 -3.2602 0.6103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597012426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:23 Heat of formation + Delta-G solvation = -19.219146 kcal Electronic energy + Delta-G solvation = -17703.418322 eV Core-core repulsion = 15060.101049 eV Total energy + Delta-G solvation = -2643.317273 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.54429 -37.86553 -34.75545 -34.27187 -31.36810 -30.59272 -27.35338 -26.16722 -24.67798 -22.32446 -22.31324 -21.01572 -18.92735 -18.26008 -16.93094 -15.97364 -15.06476 -14.73502 -14.33182 -14.13890 -13.91548 -13.53731 -13.08385 -12.75702 -12.40036 -12.16179 -11.57216 -11.44417 -11.39395 -11.23696 -11.01575 -10.96714 -10.65306 -10.60443 -10.45419 -10.25585 -10.08885 -9.93544 -9.55468 -9.22003 -9.03344 -8.21418 -7.82773 -6.28122 -3.86986 3.10297 3.18926 3.20786 3.95250 3.97594 4.07982 4.74467 4.95321 5.02140 5.11020 5.14017 5.33536 5.49114 5.60315 5.78183 5.80250 5.81206 5.94429 6.04834 6.06737 6.19087 6.26351 6.31067 6.39896 6.46527 6.60854 6.62601 6.73607 6.89355 6.98236 7.01039 7.28614 7.44450 7.55223 7.81146 8.43209 9.09646 9.60127 9.99899 10.66801 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.008196 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.699080 B = 3415.566819 C = 4000.999702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.446 5.446 3 C -0.331 4.331 4 H 0.107 0.893 5 C 0.033 3.967 6 N -0.875 5.875 7 Si 0.922 3.078 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.453 3.547 12 O -0.617 6.617 13 C -0.081 4.081 14 H 0.084 0.916 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.079 4.079 18 C -0.116 4.116 19 C -0.180 4.180 20 C -0.177 4.177 21 C -0.056 4.056 22 H 0.033 0.967 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.266 0.734 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 -3.693 1.545 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.163 5.163 3 C -0.459 4.459 4 H 0.124 0.876 5 C -0.170 4.170 6 N -0.514 5.514 7 Si 0.748 3.252 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.242 3.758 12 O -0.505 6.505 13 C -0.102 4.102 14 H 0.102 0.898 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.217 4.217 20 C -0.213 4.213 21 C -0.094 4.094 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.147 -4.005 1.484 11.010 hybrid contribution 0.385 1.059 -0.224 1.149 sum 10.533 -2.946 1.261 11.009 Atomic orbital electron populations 1.21523 0.80164 0.97297 1.03143 1.43704 1.06078 1.04825 1.61736 1.19887 0.94860 0.83726 1.47437 0.87582 1.25355 0.95708 0.99676 0.96300 1.70213 1.06596 1.27634 1.46979 0.86001 0.79353 0.80953 0.78852 1.20272 1.20869 1.19352 1.20027 0.89197 0.83582 0.82999 1.90495 1.70259 1.31666 1.58090 1.20907 0.93691 0.96916 0.98677 0.89769 1.21567 0.94675 1.02893 0.96094 1.21514 0.96193 0.96180 1.01221 1.21143 0.98764 0.96537 0.95226 1.21590 0.94437 1.01321 0.94265 1.22955 1.02433 0.91820 1.04532 1.23006 1.01706 0.99342 0.97294 1.20894 0.89962 0.96541 1.02014 0.94881 0.92330 0.91556 0.92314 0.89614 0.92539 0.91928 0.92268 0.91766 0.92502 0.89066 0.89335 0.89269 0.88947 0.92077 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.15 8.87 59.85 0.53 3.68 16 2 N -0.45 -11.62 3.03 -122.19 -0.37 -11.99 16 3 C -0.33 -8.39 8.37 -14.93 -0.12 -8.51 16 4 H 0.11 2.49 4.83 -52.49 -0.25 2.24 16 5 C 0.03 0.84 5.46 -17.47 -0.10 0.75 16 6 N -0.87 -23.02 9.57 55.50 0.53 -22.49 16 7 Si 0.92 19.47 29.56 -169.99 -5.03 14.45 16 8 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 C 0.45 11.26 6.94 -10.99 -0.08 11.19 16 12 O -0.62 -16.83 15.27 5.55 0.08 -16.75 16 13 C -0.08 -1.62 1.69 -91.71 -0.15 -1.77 16 14 H 0.08 1.71 7.55 -51.93 -0.39 1.31 16 15 C -0.11 -2.06 4.72 -26.79 -0.13 -2.18 16 16 C -0.11 -1.64 5.93 -26.67 -0.16 -1.80 16 17 C -0.08 -1.06 5.67 -26.56 -0.15 -1.21 16 18 C -0.12 -1.68 1.98 -154.49 -0.31 -1.99 16 19 C -0.18 -2.26 9.99 -26.81 -0.27 -2.52 16 20 C -0.18 -2.31 9.93 -26.75 -0.27 -2.57 16 21 C -0.06 -1.01 4.34 -26.56 -0.12 -1.13 16 22 H 0.03 0.84 6.94 -51.93 -0.36 0.48 16 23 H 0.06 1.53 7.31 -51.93 -0.38 1.15 16 24 H 0.07 1.77 6.86 -51.93 -0.36 1.42 16 25 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 26 H 0.09 1.68 5.65 -51.93 -0.29 1.39 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 36 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 LS Contribution 289.31 15.07 4.36 4.36 Total: -1.00 -28.37 289.31 -7.53 -35.90 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.80 Total: 4.59 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.31 Total: -8.07 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.16 Total: -34.49 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.08 Total: -16.75 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.37 -7.53 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.685 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds