Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00100 * 8 6 4 10 10 H 1.48500 * 109.46954 * 210.00202 * 8 6 4 11 11 H 1.48503 * 109.47010 * 330.00034 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.47419 * 125.65146 * 359.74383 * 14 12 2 16 16 C 1.54905 * 104.83112 * 155.83584 * 15 14 12 17 17 C 1.55159 * 101.58274 * 37.01724 * 16 15 14 18 18 C 1.47028 * 125.64354 * 179.44686 * 14 12 2 19 19 H 1.08996 * 109.87630 * 300.50470 * 18 14 12 20 20 C 1.52991 * 109.88362 * 61.67308 * 18 14 12 21 21 C 1.53004 * 117.49783 * 248.74477 * 20 18 14 22 22 C 1.53008 * 117.49650 * 180.08710 * 20 18 14 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 26 26 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 27 27 H 1.09000 * 110.36803 * 274.67713 * 15 14 12 28 28 H 1.09005 * 110.36591 * 36.89186 * 15 14 12 29 29 H 1.09004 * 111.00634 * 155.08353 * 16 15 14 30 30 H 1.08999 * 111.00995 * 278.93548 * 16 15 14 31 31 H 1.08992 * 110.72329 * 82.85541 * 17 16 15 32 32 H 1.08997 * 110.72187 * 205.96072 * 17 16 15 33 33 H 1.09000 * 115.55381 * 34.41695 * 20 18 14 34 34 H 1.08998 * 117.50168 * 0.02562 * 21 20 18 35 35 H 1.09000 * 117.49868 * 145.02327 * 21 20 18 36 36 H 1.08994 * 117.49969 * 214.97943 * 22 20 18 37 37 H 1.09002 * 117.49460 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3429 -0.9488 5.1121 11 1 2.4858 -2.5659 3.7122 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 0.8766 0.9357 -2.7337 16 6 1.3071 1.4001 -4.1475 17 6 1.5546 0.0437 -4.8590 18 6 2.1410 -0.8331 -3.7326 19 1 3.2294 -0.8366 -3.7914 20 6 1.6057 -2.2610 -3.8561 21 6 2.6215 -3.4037 -3.7991 22 6 1.9536 -3.0384 -5.1272 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7086 1.1615 3.4843 27 1 -0.1791 0.6646 -2.7285 28 1 1.0702 1.7185 -2.0002 29 1 0.5077 1.9572 -4.6360 30 1 2.2221 1.9907 -4.1030 31 1 0.6186 -0.3738 -5.2299 32 1 2.2723 0.1595 -5.6712 33 1 0.6259 -2.4359 -3.4115 34 1 3.6711 -3.1383 -3.6731 35 1 2.3099 -4.3305 -3.3173 36 1 1.2030 -3.7250 -5.5185 37 1 2.5636 -2.5323 -5.8755 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597129370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = -15.228163 kcal Electronic energy + Delta-G solvation = -17583.357595 eV Core-core repulsion = 14940.213384 eV Total energy + Delta-G solvation = -2643.144211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70373 -37.22806 -35.83249 -33.68869 -31.35652 -30.04741 -28.43903 -25.10852 -24.05956 -22.26453 -21.94323 -21.15035 -20.13691 -18.39704 -16.45222 -15.84399 -15.68611 -15.19651 -14.57168 -14.12568 -13.72618 -13.36379 -13.10976 -12.76176 -12.45230 -12.31366 -11.76438 -11.47475 -11.29838 -11.09761 -10.96537 -10.94068 -10.69161 -10.64897 -10.39297 -10.21038 -10.11304 -9.90059 -9.66863 -8.91001 -8.50891 -8.24476 -7.96127 -5.99313 -4.01923 3.35878 3.41229 3.48110 3.65280 3.81742 4.11039 4.50211 4.73594 4.81744 4.91634 5.17205 5.23018 5.30368 5.34259 5.49766 5.62821 5.70640 5.77432 5.85691 5.95430 6.06301 6.13763 6.18349 6.22357 6.29685 6.37282 6.53267 6.69927 6.88426 6.97809 7.11298 7.54670 7.80836 8.05747 8.22461 8.50462 9.07032 9.33901 9.63417 11.08374 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.007295 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.185783 B = 3837.448396 C = 4478.069121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.035 3.965 3 H 0.049 0.951 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.534 3.466 13 O -0.536 6.536 14 N -0.626 5.626 15 C 0.105 3.895 16 C -0.137 4.137 17 C -0.123 4.123 18 C 0.167 3.833 19 H 0.066 0.934 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.185 4.185 23 H 0.028 0.972 24 H 0.091 0.909 25 H 0.020 0.980 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 0.364 -14.898 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.014 3.986 3 H 0.067 0.933 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.326 3.674 13 O -0.411 6.411 14 N -0.363 5.363 15 C -0.018 4.018 16 C -0.175 4.175 17 C -0.161 4.161 18 C 0.063 3.937 19 H 0.084 0.916 20 C -0.168 4.168 21 C -0.196 4.196 22 C -0.223 4.223 23 H 0.047 0.953 24 H 0.110 0.890 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.085 -0.106 -14.567 14.608 hybrid contribution 0.198 -0.399 0.863 0.971 sum -0.887 -0.504 -13.705 13.743 Atomic orbital electron populations 1.21849 0.96681 0.99762 1.01228 1.18815 0.94154 0.96581 0.89081 0.93297 1.21173 1.30760 1.12755 0.89046 0.90834 1.24943 0.95155 0.95113 0.99054 1.69883 1.37200 1.23210 1.23423 0.86467 0.78431 0.80278 0.82134 1.20688 1.21310 1.19784 1.21756 0.78464 0.84151 0.83016 1.90533 1.37976 1.26742 1.85864 1.48879 1.52907 1.29619 1.04909 1.22291 0.94898 0.88540 0.96061 1.22831 1.01951 0.96911 0.95766 1.22620 1.01521 0.95085 0.96873 1.20973 0.97932 0.90507 0.84336 0.91580 1.22534 1.00334 0.92964 1.00974 1.22831 0.98473 0.99401 0.98864 1.22949 1.04050 1.03907 0.91348 0.95304 0.89016 0.96159 0.93042 0.91735 0.90225 0.90288 0.90872 0.90567 0.90790 0.88154 0.88919 0.89279 0.89277 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.78 37.16 0.33 -2.91 16 2 C 0.03 0.89 1.98 -92.92 -0.18 0.70 16 3 H 0.05 1.30 7.84 -51.92 -0.41 0.90 16 4 C -0.50 -14.48 8.37 -34.44 -0.29 -14.77 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.53 12.70 7.00 -10.98 -0.08 12.62 16 13 O -0.54 -14.28 15.11 5.55 0.08 -14.20 16 14 N -0.63 -11.69 3.06 -163.03 -0.50 -12.19 16 15 C 0.11 1.59 5.14 -2.53 -0.01 1.58 16 16 C -0.14 -1.55 7.08 -24.58 -0.17 -1.72 16 17 C -0.12 -1.41 6.20 -24.90 -0.15 -1.56 16 18 C 0.17 2.60 3.05 -66.96 -0.20 2.40 16 19 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 20 C -0.15 -2.31 4.54 -90.62 -0.41 -2.72 16 21 C -0.16 -2.43 10.00 -26.69 -0.27 -2.70 16 22 C -0.18 -2.26 9.96 -26.69 -0.27 -2.52 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 25 H 0.02 0.39 5.01 -51.93 -0.26 0.13 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.06 0.94 7.09 -51.93 -0.37 0.57 16 28 H 0.08 1.26 7.34 -51.93 -0.38 0.88 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -31.27 295.19 -8.01 -39.28 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.84 Total: 0.48 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.81 Total: -10.07 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.13 Total: -37.12 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.27 -8.01 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597129370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.056 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds