Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00100 * 8 6 4 10 10 H 1.48500 * 109.46954 * 210.00202 * 8 6 4 11 11 H 1.48503 * 109.47010 * 330.00034 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.47419 * 125.65146 * 359.74383 * 14 12 2 16 16 C 1.54905 * 104.83112 * 155.83584 * 15 14 12 17 17 C 1.55159 * 101.58274 * 37.01724 * 16 15 14 18 18 C 1.47028 * 125.64354 * 179.44686 * 14 12 2 19 19 H 1.08996 * 109.87630 * 300.50470 * 18 14 12 20 20 C 1.52991 * 109.88362 * 61.67308 * 18 14 12 21 21 C 1.53004 * 117.49783 * 248.74477 * 20 18 14 22 22 C 1.53008 * 117.49650 * 180.08710 * 20 18 14 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 26 26 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 27 27 H 1.09000 * 110.36803 * 274.67713 * 15 14 12 28 28 H 1.09005 * 110.36591 * 36.89186 * 15 14 12 29 29 H 1.09004 * 111.00634 * 155.08353 * 16 15 14 30 30 H 1.08999 * 111.00995 * 278.93548 * 16 15 14 31 31 H 1.08992 * 110.72329 * 82.85541 * 17 16 15 32 32 H 1.08997 * 110.72187 * 205.96072 * 17 16 15 33 33 H 1.09000 * 115.55381 * 34.41695 * 20 18 14 34 34 H 1.08998 * 117.50168 * 0.02562 * 21 20 18 35 35 H 1.09000 * 117.49868 * 145.02327 * 21 20 18 36 36 H 1.08994 * 117.49969 * 214.97943 * 22 20 18 37 37 H 1.09002 * 117.49460 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3429 -0.9488 5.1121 11 1 2.4858 -2.5659 3.7122 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 0.8766 0.9357 -2.7337 16 6 1.3071 1.4001 -4.1475 17 6 1.5546 0.0437 -4.8590 18 6 2.1410 -0.8331 -3.7326 19 1 3.2294 -0.8366 -3.7914 20 6 1.6057 -2.2610 -3.8561 21 6 2.6215 -3.4037 -3.7991 22 6 1.9536 -3.0384 -5.1272 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7086 1.1615 3.4843 27 1 -0.1791 0.6646 -2.7285 28 1 1.0702 1.7185 -2.0002 29 1 0.5077 1.9572 -4.6360 30 1 2.2221 1.9907 -4.1030 31 1 0.6186 -0.3738 -5.2299 32 1 2.2723 0.1595 -5.6712 33 1 0.6259 -2.4359 -3.4115 34 1 3.6711 -3.1383 -3.6731 35 1 2.3099 -4.3305 -3.3173 36 1 1.2030 -3.7250 -5.5185 37 1 2.5636 -2.5323 -5.8755 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597129370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = -33.963237 kcal Electronic energy + Delta-G solvation = -17584.170009 eV Core-core repulsion = 14940.213384 eV Total energy + Delta-G solvation = -2643.956625 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17230 -38.78619 -37.08510 -35.77118 -33.06837 -31.70657 -29.67667 -27.22719 -25.60480 -23.55305 -23.33831 -22.36104 -21.44960 -19.89707 -18.38958 -17.67318 -17.16334 -16.68933 -16.26772 -15.67249 -15.08922 -14.97840 -14.46778 -14.37139 -13.99021 -13.57070 -13.34525 -13.03140 -12.93393 -12.70740 -12.53661 -12.39791 -12.26731 -12.18044 -12.03506 -11.91707 -11.52075 -11.29471 -11.02807 -10.82299 -10.58321 -10.20544 -9.47884 -8.17231 -6.27752 1.37864 1.38066 1.50517 1.95940 2.20245 2.44727 2.94585 3.11781 3.67642 3.71926 3.80550 4.10848 4.15473 4.21016 4.30333 4.37893 4.52344 4.68487 4.73771 4.78063 4.87715 4.94268 4.97368 5.02126 5.04705 5.11045 5.14502 5.22361 5.27320 5.42602 5.46630 5.65321 5.71546 5.96119 6.21142 6.70539 6.84139 7.38733 7.55638 8.88825 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.007295 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.185783 B = 3837.448396 C = 4478.069121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 H 0.034 0.966 4 C -0.531 4.531 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.530 3.470 13 O -0.579 6.579 14 N -0.623 5.623 15 C 0.091 3.909 16 C -0.123 4.123 17 C -0.110 4.110 18 C 0.158 3.842 19 H 0.051 0.949 20 C -0.168 4.168 21 C -0.187 4.187 22 C -0.137 4.137 23 H 0.015 0.985 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.265 0.735 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 1.154 -17.158 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 H 0.052 0.948 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.206 1.206 12 C 0.321 3.679 13 O -0.458 6.458 14 N -0.357 5.357 15 C -0.031 4.031 16 C -0.161 4.161 17 C -0.147 4.147 18 C 0.055 3.945 19 H 0.069 0.931 20 C -0.187 4.187 21 C -0.224 4.224 22 C -0.174 4.174 23 H 0.034 0.966 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.923 0.727 -16.871 16.996 hybrid contribution 0.447 -0.619 1.541 1.720 sum -1.476 0.108 -15.330 15.402 Atomic orbital electron populations 1.21646 0.95247 0.99045 1.01967 1.18704 0.95274 0.95417 0.89494 0.94840 1.21306 1.31610 1.12725 0.91263 0.93574 1.25604 0.95154 0.95782 1.01387 1.69956 1.37125 1.23605 1.24323 0.85594 0.78505 0.78680 0.79100 1.19869 1.19642 1.20553 1.21298 0.78476 0.83724 0.84406 1.90499 1.39961 1.28457 1.86858 1.48770 1.52053 1.30315 1.04578 1.22609 0.94962 0.86904 0.98635 1.22826 1.03267 0.97154 0.92813 1.22643 1.02721 0.93724 0.95654 1.21274 0.97470 0.91618 0.84135 0.93065 1.22486 0.99234 0.92980 1.04045 1.22819 0.97861 0.99249 1.02509 1.23044 1.02795 1.01771 0.89770 0.96553 0.91129 0.92433 0.92541 0.90674 0.91393 0.86741 0.90584 0.88950 0.87935 0.90029 0.90354 0.90356 0.87213 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.78 71.98 0.63 -5.19 16 2 C 0.03 1.71 1.98 -12.29 -0.02 1.69 16 3 H 0.03 1.86 7.84 -2.38 -0.02 1.84 16 4 C -0.53 -32.11 8.37 25.60 0.21 -31.90 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -52.40 11.32 21.45 0.24 -52.16 16 8 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 12 C 0.53 26.13 7.00 87.66 0.61 26.74 16 13 O -0.58 -32.52 15.11 -3.04 -0.05 -32.57 16 14 N -0.62 -23.19 3.06 -788.08 -2.41 -25.61 16 15 C 0.09 2.58 5.14 86.85 0.45 3.03 16 16 C -0.12 -2.30 7.08 31.99 0.23 -2.07 16 17 C -0.11 -2.05 6.20 31.78 0.20 -1.86 16 18 C 0.16 4.74 3.05 45.34 0.14 4.88 16 19 H 0.05 1.69 7.94 -2.39 -0.02 1.67 16 20 C -0.17 -5.07 4.54 -10.79 -0.05 -5.12 16 21 C -0.19 -5.79 10.00 30.62 0.31 -5.49 16 22 C -0.14 -2.94 9.96 30.62 0.31 -2.63 16 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 25 H 0.06 2.25 5.01 -2.38 -0.01 2.24 16 26 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 27 H 0.08 1.99 7.09 -2.39 -0.02 1.97 16 28 H 0.07 2.09 7.34 -2.38 -0.02 2.07 16 29 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.50 7.86 -2.39 -0.02 1.48 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.08 2.60 8.07 -2.39 -0.02 2.59 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.38 295.19 4.30 -67.08 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.04 Total: 11.33 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 3.46 Total: -16.32 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.17 Total: -77.77 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -71.38 4.30 -67.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597129370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.113 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds