Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47411 * 120.00015 * 2 1 3 5 5 H 1.07994 * 119.99953 * 119.99996 * 4 2 1 6 6 C 1.37880 * 119.99629 * 300.00235 * 4 2 1 7 7 N 1.31517 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47233 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47039 * 300.00169 * 8 6 4 11 11 H 1.48502 * 109.47228 * 59.99922 * 8 6 4 12 12 C 1.50704 * 109.47285 * 240.00277 * 2 1 3 13 13 O 1.21281 * 119.99774 * 272.10403 * 12 2 1 14 14 N 1.34772 * 120.00286 * 92.10869 * 12 2 1 15 15 C 1.47432 * 125.64730 * 5.37278 * 14 12 2 16 16 C 1.54908 * 104.83346 * 204.09500 * 15 14 12 17 17 C 1.55163 * 101.58384 * 322.99513 * 16 15 14 18 18 C 1.47017 * 125.65038 * 185.07304 * 14 12 2 19 19 H 1.09005 * 109.88223 * 59.55461 * 18 14 12 20 20 C 1.53005 * 109.88195 * 298.39239 * 18 14 12 21 21 C 1.52998 * 117.49676 * 241.56445 * 20 18 14 22 22 C 1.52995 * 117.49932 * 172.94301 * 20 18 14 23 23 H 1.09001 * 109.47105 * 60.60492 * 1 2 3 24 24 H 1.09004 * 109.46835 * 180.59945 * 1 2 3 25 25 H 1.08994 * 109.47536 * 300.59811 * 1 2 3 26 26 H 0.96998 * 119.99742 * 179.97438 * 7 6 4 27 27 H 1.08991 * 110.36691 * 322.93862 * 15 14 12 28 28 H 1.09003 * 110.36042 * 85.26049 * 15 14 12 29 29 H 1.08999 * 111.00383 * 81.06451 * 16 15 14 30 30 H 1.08994 * 111.00869 * 204.88251 * 16 15 14 31 31 H 1.08996 * 110.72250 * 153.85920 * 17 16 15 32 32 H 1.08999 * 110.71849 * 276.96165 * 17 16 15 33 33 H 1.08996 * 115.54795 * 27.26915 * 20 18 14 34 34 H 1.09002 * 117.50142 * 359.97438 * 21 20 18 35 35 H 1.08999 * 117.50002 * 145.02042 * 21 20 18 36 36 H 1.08999 * 117.49898 * 214.97938 * 22 20 18 37 37 H 1.09002 * 117.49885 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1202 4.0079 9 1 1.8259 -0.4205 5.2204 10 1 1.8259 -2.5202 4.0077 11 1 3.8064 -1.1208 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.1981 -1.9116 -1.2120 14 7 2.2975 -0.0108 -2.3515 15 6 2.2486 1.4571 -2.4800 16 6 2.0099 1.7155 -3.9886 17 6 2.8580 0.5887 -4.6356 18 6 2.6894 -0.5845 -3.6471 19 1 1.9113 -1.2591 -4.0044 20 6 4.0116 -1.3409 -3.5026 21 6 5.2029 -0.8444 -4.3243 22 6 4.4992 -2.1478 -4.7075 23 1 -0.3633 0.5044 -0.8954 24 1 -0.3633 -1.0277 0.0108 25 1 -0.3634 0.5230 0.8845 26 1 0.7088 1.1614 3.4843 27 1 1.4259 1.8623 -1.8909 28 1 3.1947 1.8972 -2.1648 29 1 0.9555 1.6052 -4.2418 30 1 2.3787 2.6989 -4.2798 31 1 2.4662 0.3271 -5.6185 32 1 3.9044 0.8854 -4.7056 33 1 4.2168 -1.7437 -2.5108 34 1 5.0446 0.0208 -4.9682 35 1 6.1922 -0.9204 -3.8731 36 1 5.0255 -3.0813 -4.5085 37 1 3.8779 -2.1402 -5.6031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597129374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -10.206641 kcal Electronic energy + Delta-G solvation = -17522.608172 eV Core-core repulsion = 14879.681710 eV Total energy + Delta-G solvation = -2642.926462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82783 -37.47283 -35.68644 -33.68266 -31.23340 -30.16198 -28.41562 -25.15954 -24.19939 -22.59581 -22.04154 -21.55365 -19.54914 -18.11260 -16.44922 -16.19765 -15.75804 -15.46607 -14.62514 -13.90357 -13.78132 -13.55220 -13.19162 -12.61895 -12.43823 -12.19250 -12.06107 -11.51443 -11.34268 -11.03966 -10.95923 -10.82510 -10.68032 -10.62831 -10.47105 -10.22869 -10.19021 -9.99864 -9.70248 -8.98422 -8.53568 -8.27373 -7.96994 -6.02167 -4.05665 3.36207 3.38737 3.43456 3.65763 3.77805 3.99309 4.46923 4.71138 4.79063 4.95621 5.04158 5.16124 5.20121 5.30870 5.46379 5.55215 5.70079 5.76714 5.91032 5.92129 5.97814 6.10737 6.17042 6.21731 6.24757 6.38981 6.50141 6.70220 6.91060 7.02859 7.08215 7.51384 7.78906 8.01799 8.19513 8.46475 8.98677 9.28793 9.58908 11.05202 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.007099 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.056500 B = 3943.470180 C = 4455.325714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.036 3.964 3 H 0.044 0.956 4 C -0.500 4.500 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.538 3.462 13 O -0.545 6.545 14 N -0.626 5.626 15 C 0.105 3.895 16 C -0.133 4.133 17 C -0.141 4.141 18 C 0.167 3.833 19 H 0.070 0.930 20 C -0.150 4.150 21 C -0.192 4.192 22 C -0.177 4.177 23 H 0.010 0.990 24 H 0.033 0.967 25 H 0.093 0.907 26 H 0.262 0.738 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 3.024 -14.140 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.015 3.985 3 H 0.062 0.938 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.331 3.669 13 O -0.421 6.421 14 N -0.362 5.362 15 C -0.019 4.019 16 C -0.171 4.171 17 C -0.178 4.178 18 C 0.063 3.937 19 H 0.088 0.912 20 C -0.169 4.169 21 C -0.228 4.228 22 C -0.215 4.215 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.578 2.428 -13.876 14.534 hybrid contribution 0.347 -0.432 0.824 0.993 sum 3.926 1.996 -13.051 13.774 Atomic orbital electron populations 1.21672 0.96201 1.00129 1.00609 1.18845 0.94199 0.96559 0.88940 0.93784 1.21007 1.31253 1.12380 0.89182 0.91576 1.24924 0.95091 0.95037 0.99004 1.69862 1.36946 1.22989 1.23643 0.86523 0.79183 0.79850 0.81695 1.21269 1.20130 1.20250 1.21784 0.74629 0.87491 0.83021 1.90532 1.52646 1.15579 1.83364 1.48860 1.70479 1.06778 1.10098 1.22209 1.01907 0.81808 0.95942 1.22780 1.00478 0.98613 0.95244 1.23021 1.01610 0.95190 0.97977 1.20899 0.93990 0.94164 0.84669 0.91228 1.22748 0.94498 1.02432 0.97263 1.23251 0.97070 0.98041 1.04450 1.22867 1.04117 0.95334 0.99187 0.97061 0.94766 0.88837 0.92864 0.90072 0.91899 0.90882 0.90258 0.90750 0.89384 0.86780 0.87909 0.89305 0.89154 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.94 37.16 0.33 -2.81 16 2 C 0.04 0.92 2.10 -92.92 -0.20 0.72 16 3 H 0.04 1.14 6.87 -51.93 -0.36 0.78 16 4 C -0.50 -14.44 8.32 -34.44 -0.29 -14.73 16 5 H 0.07 2.00 7.19 -52.49 -0.38 1.63 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.35 11.33 55.43 0.63 -24.73 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.54 12.92 6.59 -10.99 -0.07 12.85 16 13 O -0.55 -14.71 15.13 5.56 0.08 -14.63 16 14 N -0.63 -11.90 3.06 -163.00 -0.50 -12.40 16 15 C 0.10 1.61 6.34 -2.53 -0.02 1.60 16 16 C -0.13 -1.52 7.09 -24.58 -0.17 -1.69 16 17 C -0.14 -1.62 5.95 -24.88 -0.15 -1.77 16 18 C 0.17 2.65 3.23 -66.94 -0.22 2.43 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 20 C -0.15 -2.40 5.62 -90.62 -0.51 -2.91 16 21 C -0.19 -2.37 9.50 -26.73 -0.25 -2.62 16 22 C -0.18 -2.25 10.19 -26.74 -0.27 -2.53 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 2.45 6.09 -51.93 -0.32 2.14 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.08 1.30 7.29 -51.93 -0.38 0.92 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.94 4.93 -51.93 -0.26 0.68 16 33 H 0.11 2.27 6.98 -51.93 -0.36 1.91 16 34 H 0.10 1.08 5.37 -51.93 -0.28 0.80 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -31.33 294.00 -7.97 -39.30 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.69 Total: 0.86 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.91 Total: -9.84 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.13 Total: -37.12 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.33 -7.97 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597129374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.092 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds