Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47411 * 120.00015 * 2 1 3 5 5 H 1.07994 * 119.99953 * 119.99996 * 4 2 1 6 6 C 1.37880 * 119.99629 * 300.00235 * 4 2 1 7 7 N 1.31517 * 120.00071 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47233 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47039 * 300.00169 * 8 6 4 11 11 H 1.48502 * 109.47228 * 59.99922 * 8 6 4 12 12 C 1.50704 * 109.47285 * 240.00277 * 2 1 3 13 13 O 1.21281 * 119.99774 * 272.10403 * 12 2 1 14 14 N 1.34772 * 120.00286 * 92.10869 * 12 2 1 15 15 C 1.47432 * 125.64730 * 5.37278 * 14 12 2 16 16 C 1.54908 * 104.83346 * 204.09500 * 15 14 12 17 17 C 1.55163 * 101.58384 * 322.99513 * 16 15 14 18 18 C 1.47017 * 125.65038 * 185.07304 * 14 12 2 19 19 H 1.09005 * 109.88223 * 59.55461 * 18 14 12 20 20 C 1.53005 * 109.88195 * 298.39239 * 18 14 12 21 21 C 1.52998 * 117.49676 * 241.56445 * 20 18 14 22 22 C 1.52995 * 117.49932 * 172.94301 * 20 18 14 23 23 H 1.09001 * 109.47105 * 60.60492 * 1 2 3 24 24 H 1.09004 * 109.46835 * 180.59945 * 1 2 3 25 25 H 1.08994 * 109.47536 * 300.59811 * 1 2 3 26 26 H 0.96998 * 119.99742 * 179.97438 * 7 6 4 27 27 H 1.08991 * 110.36691 * 322.93862 * 15 14 12 28 28 H 1.09003 * 110.36042 * 85.26049 * 15 14 12 29 29 H 1.08999 * 111.00383 * 81.06451 * 16 15 14 30 30 H 1.08994 * 111.00869 * 204.88251 * 16 15 14 31 31 H 1.08996 * 110.72250 * 153.85920 * 17 16 15 32 32 H 1.08999 * 110.71849 * 276.96165 * 17 16 15 33 33 H 1.08996 * 115.54795 * 27.26915 * 20 18 14 34 34 H 1.09002 * 117.50142 * 359.97438 * 21 20 18 35 35 H 1.08999 * 117.50002 * 145.02042 * 21 20 18 36 36 H 1.08999 * 117.49898 * 214.97938 * 22 20 18 37 37 H 1.09002 * 117.49885 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1202 4.0079 9 1 1.8259 -0.4205 5.2204 10 1 1.8259 -2.5202 4.0077 11 1 3.8064 -1.1208 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.1981 -1.9116 -1.2120 14 7 2.2975 -0.0108 -2.3515 15 6 2.2486 1.4571 -2.4800 16 6 2.0099 1.7155 -3.9886 17 6 2.8580 0.5887 -4.6356 18 6 2.6894 -0.5845 -3.6471 19 1 1.9113 -1.2591 -4.0044 20 6 4.0116 -1.3409 -3.5026 21 6 5.2029 -0.8444 -4.3243 22 6 4.4992 -2.1478 -4.7075 23 1 -0.3633 0.5044 -0.8954 24 1 -0.3633 -1.0277 0.0108 25 1 -0.3634 0.5230 0.8845 26 1 0.7088 1.1614 3.4843 27 1 1.4259 1.8623 -1.8909 28 1 3.1947 1.8972 -2.1648 29 1 0.9555 1.6052 -4.2418 30 1 2.3787 2.6989 -4.2798 31 1 2.4662 0.3271 -5.6185 32 1 3.9044 0.8854 -4.7056 33 1 4.2168 -1.7437 -2.5108 34 1 5.0446 0.0208 -4.9682 35 1 6.1922 -0.9204 -3.8731 36 1 5.0255 -3.0813 -4.5085 37 1 3.8779 -2.1402 -5.6031 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597129374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -29.122503 kcal Electronic energy + Delta-G solvation = -17523.428425 eV Core-core repulsion = 14879.681710 eV Total energy + Delta-G solvation = -2643.746715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.26482 -39.04374 -36.93520 -35.78732 -32.92077 -31.87134 -29.62592 -27.32217 -25.67337 -23.86536 -23.46310 -22.70832 -20.94180 -19.61259 -18.41233 -17.80172 -17.30750 -16.79928 -16.43288 -15.48612 -15.33285 -14.91815 -14.72243 -14.17363 -13.82620 -13.66914 -13.46250 -13.23433 -12.96288 -12.66794 -12.61584 -12.39045 -12.34050 -12.08804 -12.02765 -11.93101 -11.44804 -11.27949 -11.11674 -10.79275 -10.61835 -10.25765 -9.50617 -8.19287 -6.30761 1.37284 1.39650 1.47865 1.89860 2.19589 2.43262 2.90479 3.09647 3.61961 3.70102 3.89808 4.02024 4.10433 4.16444 4.28485 4.39982 4.47127 4.67169 4.73920 4.76630 4.85159 4.91334 4.97103 4.98914 5.06251 5.07869 5.13846 5.23783 5.26968 5.38081 5.44020 5.62797 5.70405 5.90137 6.16233 6.66971 6.77164 7.34329 7.49766 8.86611 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.007099 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.056500 B = 3943.470180 C = 4455.325714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.033 3.967 3 H 0.039 0.961 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.534 3.466 13 O -0.590 6.590 14 N -0.623 5.623 15 C 0.090 3.910 16 C -0.118 4.118 17 C -0.127 4.127 18 C 0.159 3.841 19 H 0.055 0.945 20 C -0.190 4.190 21 C -0.166 4.166 22 C -0.164 4.164 23 H 0.040 0.960 24 H 0.017 0.983 25 H 0.076 0.924 26 H 0.267 0.733 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 4.551 -16.288 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.012 3.988 3 H 0.057 0.943 4 C -0.570 4.570 5 H 0.057 0.943 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.325 3.675 13 O -0.470 6.470 14 N -0.357 5.357 15 C -0.032 4.032 16 C -0.156 4.156 17 C -0.164 4.164 18 C 0.056 3.944 19 H 0.073 0.927 20 C -0.209 4.209 21 C -0.202 4.202 22 C -0.201 4.201 23 H 0.059 0.941 24 H 0.036 0.964 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.130 4.008 -16.063 17.063 hybrid contribution 0.191 -0.891 1.478 1.736 sum 4.321 3.117 -14.585 15.528 Atomic orbital electron populations 1.21484 0.95506 0.99093 1.01197 1.18752 0.94815 0.95917 0.89297 0.94311 1.21138 1.32166 1.12349 0.91336 0.94296 1.25588 0.95052 0.95697 1.01328 1.69929 1.36822 1.23375 1.24573 0.85648 0.78777 0.78644 0.78806 1.19386 1.20465 1.19895 1.21359 0.75031 0.86933 0.84162 1.90492 1.54854 1.17272 1.84411 1.48780 1.68380 1.08567 1.09954 1.22541 1.01866 0.79309 0.99461 1.22785 1.01172 1.00365 0.91293 1.23045 1.02833 0.92735 0.97761 1.21182 0.93412 0.95899 0.83882 0.92685 1.22526 0.96544 1.05740 0.96132 1.23381 0.95420 0.98808 1.02604 1.22982 1.03559 0.95576 0.97979 0.94066 0.96403 0.90508 0.92339 0.91138 0.91436 0.90297 0.86660 0.87642 0.87828 0.92176 0.84879 0.89244 0.89348 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 8.94 71.98 0.64 -5.13 16 2 C 0.03 1.79 2.10 -12.29 -0.03 1.76 16 3 H 0.04 2.08 6.87 -2.39 -0.02 2.06 16 4 C -0.53 -32.09 8.32 25.60 0.21 -31.88 16 5 H 0.04 2.50 7.19 -2.91 -0.02 2.48 16 6 C 0.02 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -51.92 11.33 21.45 0.24 -51.68 16 8 Si 0.96 45.80 29.54 68.60 2.03 47.82 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.53 26.83 6.59 87.66 0.58 27.41 16 13 O -0.59 -33.96 15.13 -3.03 -0.05 -34.00 16 14 N -0.62 -23.95 3.06 -788.01 -2.41 -26.37 16 15 C 0.09 2.66 6.34 86.85 0.55 3.22 16 16 C -0.12 -2.23 7.09 31.99 0.23 -2.00 16 17 C -0.13 -2.38 5.95 31.79 0.19 -2.19 16 18 C 0.16 4.92 3.23 45.35 0.15 5.06 16 19 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 20 C -0.19 -6.07 5.62 -10.79 -0.06 -6.13 16 21 C -0.17 -3.67 9.50 30.59 0.29 -3.38 16 22 C -0.16 -3.85 10.19 30.59 0.31 -3.54 16 23 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.08 4.11 6.09 -2.39 -0.01 4.09 16 26 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.07 2.21 7.29 -2.39 -0.02 2.20 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 1.65 4.93 -2.39 -0.01 1.64 16 33 H 0.06 2.58 6.98 -2.39 -0.02 2.56 16 34 H 0.13 2.13 5.37 -2.39 -0.01 2.11 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.36 294.00 4.37 -67.99 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.05 Total: 11.25 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 3.51 Total: -15.02 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.17 Total: -78.04 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.05 Total: -34.00 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.36 4.37 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597129374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.868 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds