Wall clock time and date at job start Mon Mar 30 2020 03:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50706 * 109.47224 * 119.99931 * 2 1 3 5 5 H 1.08003 * 119.99671 * 120.00222 * 4 2 1 6 6 C 1.37870 * 119.99914 * 300.00419 * 4 2 1 7 7 N 1.31513 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47097 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47185 * 119.99833 * 8 6 4 11 11 H 1.48501 * 109.47100 * 239.99627 * 8 6 4 12 12 N 1.46504 * 109.47434 * 240.00094 * 2 1 3 13 13 C 1.46502 * 119.99853 * 299.99853 * 12 2 1 14 14 C 1.34774 * 119.99980 * 120.00011 * 12 2 1 15 15 O 1.21290 * 119.99717 * 184.98252 * 14 12 2 16 16 C 1.50697 * 120.00274 * 4.97727 * 14 12 2 17 17 H 1.08997 * 110.67156 * 315.21227 * 16 14 12 18 18 C 1.54890 * 110.90997 * 78.55481 * 16 14 12 19 19 C 1.54265 * 104.19513 * 156.33168 * 18 16 14 20 20 H 1.09002 * 117.41729 * 116.36810 * 19 18 16 21 21 C 1.53005 * 118.19934 * 272.20851 * 19 18 16 22 22 C 1.52999 * 60.37490 * 93.61672 * 21 19 18 23 23 H 1.09000 * 119.75576 * 111.12745 * 22 21 19 24 24 C 1.54268 * 118.19954 * 266.38487 * 22 21 19 25 25 H 1.09001 * 109.47439 * 299.99749 * 1 2 3 26 26 H 1.08999 * 109.46983 * 60.00137 * 1 2 3 27 27 H 1.09011 * 109.46857 * 180.02562 * 1 2 3 28 28 H 0.97007 * 120.00422 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47084 * 269.58199 * 13 12 2 30 30 H 1.09004 * 109.47257 * 29.58002 * 13 12 2 31 31 H 1.09003 * 109.47175 * 149.57945 * 13 12 2 32 32 H 1.09005 * 110.48871 * 275.00439 * 18 16 14 33 33 H 1.08995 * 110.48974 * 37.52104 * 18 16 14 34 34 H 1.08999 * 117.45647 * 346.01910 * 21 19 18 35 35 H 1.08997 * 117.46238 * 201.21467 * 21 19 18 36 36 H 1.09006 * 110.48521 * 206.46810 * 24 22 21 37 37 H 1.09005 * 110.48478 * 329.10968 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.1465 -2.2869 3.6038 10 1 3.1465 -0.1874 4.8166 11 1 1.1660 -1.5867 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1229 -0.5777 -3.1170 16 6 3.2500 1.3704 -1.7910 17 1 2.4251 1.9712 -1.4080 18 6 4.4372 1.3705 -0.7962 19 6 5.1556 2.7090 -1.0645 20 1 5.1801 3.4369 -0.2535 21 6 6.2319 2.7467 -2.1514 22 6 4.7907 3.1235 -2.5007 23 1 4.5464 4.1566 -2.7478 24 6 3.8633 2.0223 -3.0550 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.7093 1.1618 3.4844 29 1 2.4198 -2.7376 -0.9780 30 1 0.6939 -2.3022 -0.9782 31 1 1.6166 -2.2834 -2.5002 32 1 4.0743 1.3316 0.2310 33 1 5.1029 0.5310 -0.9966 34 1 6.6058 1.7922 -2.5218 35 1 6.9649 3.5521 -2.1052 36 1 3.0815 2.4592 -3.6764 37 1 4.4376 1.2895 -3.6218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597143636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:32 Heat of formation + Delta-G solvation = -17.094785 kcal Electronic energy + Delta-G solvation = -17704.398494 eV Core-core repulsion = 15061.173340 eV Total energy + Delta-G solvation = -2643.225154 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91481 -38.02275 -35.52478 -32.63843 -31.56296 -29.15466 -27.91981 -26.50933 -25.31135 -22.94988 -21.33127 -20.37138 -19.38914 -17.89634 -16.67703 -16.27425 -15.89345 -15.04409 -14.63080 -14.23173 -13.50384 -13.01171 -12.84978 -12.77027 -12.55763 -12.11495 -11.63211 -11.38001 -11.20200 -11.07225 -10.98444 -10.88186 -10.73245 -10.67117 -10.55916 -10.29574 -10.16859 -9.79637 -9.49266 -9.23022 -8.86313 -8.54214 -7.60378 -6.18326 -4.26342 3.19898 3.28975 3.31924 3.37465 3.86318 4.05051 4.31773 4.79034 4.99421 5.12032 5.12859 5.45100 5.50290 5.57328 5.77195 5.81338 5.88480 6.03656 6.10342 6.18117 6.26988 6.32251 6.39909 6.46323 6.52341 6.58609 6.69687 6.72554 6.77521 6.93873 7.19830 7.42453 7.67054 7.86124 8.11831 8.47395 8.77061 9.04585 9.42056 10.86216 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.008775 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.794695 B = 3190.226969 C = 3832.299520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.251 3.749 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.591 5.591 13 C 0.096 3.904 14 C 0.516 3.484 15 O -0.578 6.578 16 C -0.106 4.106 17 H 0.100 0.900 18 C -0.078 4.078 19 C -0.161 4.161 20 H 0.110 0.890 21 C -0.156 4.156 22 C -0.169 4.169 23 H 0.107 0.893 24 C -0.078 4.078 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.033 0.967 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 3.259 -5.215 7.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.151 3.849 3 H 0.075 0.925 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.048 4.048 14 C 0.304 3.696 15 O -0.460 6.460 16 C -0.127 4.127 17 H 0.118 0.882 18 C -0.116 4.116 19 C -0.179 4.179 20 H 0.128 0.872 21 C -0.193 4.193 22 C -0.187 4.187 23 H 0.125 0.875 24 C -0.116 4.116 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.196 3.072 -5.568 7.619 hybrid contribution 0.141 -0.387 1.132 1.205 sum 4.338 2.685 -4.435 6.760 Atomic orbital electron populations 1.22143 0.98194 0.99900 1.00869 1.19118 0.91331 0.93562 0.80913 0.92497 1.21368 1.31737 1.13183 0.90050 0.92032 1.24873 0.94807 0.94947 0.98959 1.69865 1.36313 1.22648 1.23816 0.86472 0.78691 0.79757 0.82741 1.19749 1.20872 1.20924 1.48245 1.48436 1.11764 1.23621 1.21355 1.00419 0.82712 1.00293 1.20374 0.78261 0.87986 0.82951 1.90567 1.58747 1.69954 1.26696 1.22373 0.99518 0.94046 0.96811 0.88222 1.21836 0.94576 0.94950 1.00258 1.23257 1.02733 0.99688 0.92237 0.87180 1.23032 0.91308 1.02649 1.02267 1.23224 0.96418 0.99448 0.99573 0.87501 1.21816 0.97610 0.95941 0.96215 0.88661 0.96877 0.94794 0.92657 0.93693 0.91376 0.92374 0.88927 0.91613 0.89107 0.88838 0.91510 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.25 5.81 2.40 -69.08 -0.17 5.64 16 3 H 0.06 1.36 4.92 -51.93 -0.26 1.11 16 4 C -0.52 -13.21 8.37 -34.44 -0.29 -13.50 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.15 11.32 55.43 0.63 -22.52 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.59 -12.79 2.75 -175.25 -0.48 -13.27 16 13 C 0.10 1.88 9.71 59.85 0.58 2.47 16 14 C 0.52 10.96 6.95 -10.99 -0.08 10.88 16 15 O -0.58 -13.32 15.26 5.55 0.08 -13.23 16 16 C -0.11 -1.95 2.22 -89.78 -0.20 -2.15 16 17 H 0.10 1.85 6.74 -51.93 -0.35 1.50 16 18 C -0.08 -1.38 5.84 -25.07 -0.15 -1.53 16 19 C -0.16 -2.38 6.94 -89.50 -0.62 -3.00 16 20 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 21 C -0.16 -2.02 10.07 -26.73 -0.27 -2.29 16 22 C -0.17 -2.34 6.94 -89.50 -0.62 -2.96 16 23 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 24 C -0.08 -1.25 5.81 -25.08 -0.15 -1.40 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.73 6.66 -51.92 -0.35 0.39 16 28 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 31 H 0.06 1.10 7.37 -51.93 -0.38 0.72 16 32 H 0.09 1.81 7.62 -51.93 -0.40 1.41 16 33 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.39 7.29 -51.93 -0.38 1.01 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -27.19 293.78 -7.75 -34.94 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.67 Total: 3.91 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.71 Total: -9.33 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.15 Total: -35.79 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.19 -7.75 -34.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.845 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds