Wall clock time and date at job start Mon Mar 30 2020 03:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47241 * 2 1 4 4 C 1.50706 * 109.47224 * 119.99931 * 2 1 3 5 5 H 1.08003 * 119.99671 * 120.00222 * 4 2 1 6 6 C 1.37870 * 119.99914 * 300.00419 * 4 2 1 7 7 N 1.31513 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47097 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47185 * 119.99833 * 8 6 4 11 11 H 1.48501 * 109.47100 * 239.99627 * 8 6 4 12 12 N 1.46504 * 109.47434 * 240.00094 * 2 1 3 13 13 C 1.46502 * 119.99853 * 299.99853 * 12 2 1 14 14 C 1.34774 * 119.99980 * 120.00011 * 12 2 1 15 15 O 1.21290 * 119.99717 * 184.98252 * 14 12 2 16 16 C 1.50697 * 120.00274 * 4.97727 * 14 12 2 17 17 H 1.08997 * 110.67156 * 315.21227 * 16 14 12 18 18 C 1.54890 * 110.90997 * 78.55481 * 16 14 12 19 19 C 1.54265 * 104.19513 * 156.33168 * 18 16 14 20 20 H 1.09002 * 117.41729 * 116.36810 * 19 18 16 21 21 C 1.53005 * 118.19934 * 272.20851 * 19 18 16 22 22 C 1.52999 * 60.37490 * 93.61672 * 21 19 18 23 23 H 1.09000 * 119.75576 * 111.12745 * 22 21 19 24 24 C 1.54268 * 118.19954 * 266.38487 * 22 21 19 25 25 H 1.09001 * 109.47439 * 299.99749 * 1 2 3 26 26 H 1.08999 * 109.46983 * 60.00137 * 1 2 3 27 27 H 1.09011 * 109.46857 * 180.02562 * 1 2 3 28 28 H 0.97007 * 120.00422 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47084 * 269.58199 * 13 12 2 30 30 H 1.09004 * 109.47257 * 29.58002 * 13 12 2 31 31 H 1.09003 * 109.47175 * 149.57945 * 13 12 2 32 32 H 1.09005 * 110.48871 * 275.00439 * 18 16 14 33 33 H 1.08995 * 110.48974 * 37.52104 * 18 16 14 34 34 H 1.08999 * 117.45647 * 346.01910 * 21 19 18 35 35 H 1.08997 * 117.46238 * 201.21467 * 21 19 18 36 36 H 1.09006 * 110.48521 * 206.46810 * 24 22 21 37 37 H 1.09005 * 110.48478 * 329.10968 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.1465 -2.2869 3.6038 10 1 3.1465 -0.1874 4.8166 11 1 1.1660 -1.5867 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1229 -0.5777 -3.1170 16 6 3.2500 1.3704 -1.7910 17 1 2.4251 1.9712 -1.4080 18 6 4.4372 1.3705 -0.7962 19 6 5.1556 2.7090 -1.0645 20 1 5.1801 3.4369 -0.2535 21 6 6.2319 2.7467 -2.1514 22 6 4.7907 3.1235 -2.5007 23 1 4.5464 4.1566 -2.7478 24 6 3.8633 2.0223 -3.0550 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.7093 1.1618 3.4844 29 1 2.4198 -2.7376 -0.9780 30 1 0.6939 -2.3022 -0.9782 31 1 1.6166 -2.2834 -2.5002 32 1 4.0743 1.3316 0.2310 33 1 5.1029 0.5310 -0.9966 34 1 6.6058 1.7922 -2.5218 35 1 6.9649 3.5521 -2.1052 36 1 3.0815 2.4592 -3.6764 37 1 4.4376 1.2895 -3.6218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597143636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:31 Heat of formation + Delta-G solvation = -30.497244 kcal Electronic energy + Delta-G solvation = -17704.979668 eV Core-core repulsion = 15061.173340 eV Total energy + Delta-G solvation = -2643.806328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41907 -39.46013 -37.33467 -34.54565 -32.92575 -31.00250 -29.23805 -28.09756 -27.26244 -24.37448 -23.03805 -21.66795 -20.58927 -19.60224 -18.45510 -18.00579 -17.19914 -16.77082 -16.36545 -15.95035 -15.01980 -14.62169 -14.46296 -14.17479 -13.95681 -13.69466 -13.44222 -13.07711 -12.88815 -12.72995 -12.61955 -12.37604 -12.21834 -12.19036 -12.05106 -11.99817 -11.90911 -11.24662 -10.91909 -10.73458 -10.47888 -10.42483 -9.38268 -8.13523 -6.27148 1.40916 1.45561 1.54155 1.69424 2.31461 2.47713 2.76460 3.15110 3.47336 3.76579 3.88568 4.05714 4.22619 4.29068 4.45659 4.53144 4.58904 4.63259 4.68164 4.72937 4.79461 4.92278 4.93538 4.94778 5.04698 5.07328 5.20827 5.25292 5.34007 5.38768 5.46040 5.58320 5.76208 5.96859 6.21187 6.66056 6.84561 7.30022 7.45939 8.89854 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.008775 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.794695 B = 3190.226969 C = 3832.299520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.258 3.742 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.049 0.951 6 C 0.030 3.970 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.510 3.490 15 O -0.598 6.598 16 C -0.107 4.107 17 H 0.096 0.904 18 C -0.074 4.074 19 C -0.173 4.173 20 H 0.122 0.878 21 C -0.139 4.139 22 C -0.161 4.161 23 H 0.132 0.868 24 C -0.075 4.075 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.036 0.964 28 H 0.266 0.734 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 4.124 -5.382 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.157 3.843 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.068 0.932 6 C -0.170 4.170 7 N -0.546 5.546 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.327 5.327 13 C -0.048 4.048 14 C 0.300 3.700 15 O -0.481 6.481 16 C -0.128 4.128 17 H 0.114 0.886 18 C -0.112 4.112 19 C -0.191 4.191 20 H 0.140 0.860 21 C -0.176 4.176 22 C -0.179 4.179 23 H 0.150 0.850 24 C -0.113 4.113 25 H 0.095 0.905 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.894 3.933 -5.737 8.505 hybrid contribution -0.086 -0.699 1.162 1.359 sum 4.808 3.235 -4.575 7.383 Atomic orbital electron populations 1.21999 0.97630 0.99985 1.00572 1.18926 0.91609 0.92968 0.80819 0.93487 1.21482 1.31754 1.12957 0.91158 0.93244 1.25447 0.94983 0.95528 1.01092 1.69945 1.36833 1.23385 1.24401 0.85632 0.78164 0.78673 0.79909 1.19991 1.20574 1.20550 1.48309 1.48593 1.12473 1.23291 1.21428 1.00774 0.81854 1.00788 1.20896 0.77666 0.89031 0.82449 1.90546 1.59396 1.70762 1.27425 1.22416 0.99674 0.92304 0.98385 0.88570 1.21702 0.94423 0.96575 0.98503 1.23196 1.04492 0.98122 0.93339 0.86033 1.23147 0.91243 1.03365 0.99855 1.23284 0.96740 0.99813 0.98091 0.84989 1.21781 0.98202 0.96267 0.95046 0.90504 0.95497 0.94474 0.92494 0.93824 0.90568 0.91707 0.91477 0.92935 0.89756 0.85797 0.90390 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 8.95 71.98 0.64 -5.77 16 2 C 0.26 11.99 2.40 44.25 0.11 12.09 16 3 H 0.05 2.29 4.92 -2.38 -0.01 2.28 16 4 C -0.53 -27.07 8.37 25.60 0.21 -26.85 16 5 H 0.05 2.58 7.65 -2.91 -0.02 2.56 16 6 C 0.03 1.53 5.30 84.65 0.45 1.98 16 7 N -0.91 -47.17 11.32 21.44 0.24 -46.93 16 8 Si 0.95 41.02 29.54 68.60 2.03 43.05 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.60 -25.94 2.75 -826.76 -2.28 -28.22 16 13 C 0.09 3.71 9.71 127.77 1.24 4.95 16 14 C 0.51 21.76 6.95 87.66 0.61 22.37 16 15 O -0.60 -27.60 15.26 -3.06 -0.05 -27.64 16 16 C -0.11 -3.90 2.22 -10.25 -0.02 -3.92 16 17 H 0.10 3.58 6.74 -2.39 -0.02 3.56 16 18 C -0.07 -2.63 5.84 31.67 0.18 -2.44 16 19 C -0.17 -4.82 6.94 -10.07 -0.07 -4.89 16 20 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 21 C -0.14 -3.22 10.07 30.60 0.31 -2.91 16 22 C -0.16 -4.06 6.94 -10.07 -0.07 -4.13 16 23 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 24 C -0.08 -2.32 5.81 31.67 0.18 -2.13 16 25 H 0.08 3.75 6.07 -2.39 -0.01 3.74 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.59 6.66 -2.38 -0.02 1.57 16 28 H 0.27 13.19 8.31 -92.70 -0.77 12.42 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.82 6.43 -2.39 -0.02 2.81 16 31 H 0.06 2.43 7.37 -2.39 -0.02 2.42 16 32 H 0.07 2.69 7.62 -2.38 -0.02 2.67 16 33 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.06 2.22 7.29 -2.38 -0.02 2.20 16 Total: -1.00 -56.67 293.78 4.77 -51.90 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 1.05 Total: 19.50 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 3.78 Total: -11.66 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.03 Total: -75.15 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -56.67 4.77 -51.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.405 kcal (2) G-P(sol) polarization free energy of solvation -56.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds