Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47322 * 2 1 4 4 C 1.50698 * 109.47115 * 119.99935 * 2 1 3 5 5 H 1.08005 * 120.00282 * 120.00109 * 4 2 1 6 6 C 1.37876 * 120.00014 * 299.99877 * 4 2 1 7 7 N 1.31520 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46624 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47092 * 119.99655 * 8 6 4 11 11 H 1.48500 * 109.47445 * 240.00314 * 8 6 4 12 12 C 1.50699 * 109.47260 * 239.99746 * 2 1 3 13 13 O 1.21284 * 119.99986 * 335.00114 * 12 2 1 14 14 N 1.34774 * 120.00339 * 155.00122 * 12 2 1 15 15 C 1.46849 * 120.37820 * 4.91485 * 14 12 2 16 16 C 1.53842 * 108.55029 * 123.06648 * 15 14 12 17 17 C 1.53188 * 108.70524 * 51.53215 * 16 15 14 18 18 C 1.52848 * 117.65611 * 89.89683 * 17 16 15 19 19 C 1.52820 * 117.70904 * 158.75431 * 17 16 15 20 20 C 1.53176 * 115.08002 * 304.41682 * 17 16 15 21 21 C 1.46837 * 120.38453 * 185.19533 * 14 12 2 22 22 H 1.08996 * 109.46699 * 55.09305 * 1 2 3 23 23 H 1.08999 * 109.47325 * 295.08820 * 1 2 3 24 24 H 1.09000 * 109.47144 * 175.09008 * 1 2 3 25 25 H 0.96993 * 120.00515 * 180.02562 * 7 6 4 26 26 H 1.08991 * 109.58207 * 242.90431 * 15 14 12 27 27 H 1.08997 * 109.57871 * 3.31038 * 15 14 12 28 28 H 1.08998 * 109.72537 * 291.70556 * 16 15 14 29 29 H 1.08993 * 109.62178 * 171.30431 * 16 15 14 30 30 H 1.08997 * 117.50208 * 215.17824 * 18 17 16 31 31 H 1.08994 * 117.50815 * 0.23667 * 18 17 16 32 32 H 1.08998 * 117.50361 * 359.85639 * 19 17 16 33 33 H 1.08995 * 117.50267 * 144.87104 * 19 17 16 34 34 H 1.09000 * 109.59231 * 295.66294 * 20 17 16 35 35 H 1.08996 * 109.70816 * 175.29942 * 20 17 16 36 36 H 1.08997 * 109.58138 * 356.69338 * 21 14 12 37 37 H 1.09000 * 109.58220 * 116.96336 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2870 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1660 -1.5865 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 1.3370 -1.5394 -1.7784 14 7 3.2543 -0.4247 -1.7219 15 6 4.1458 0.4969 -1.0061 16 6 5.4668 -0.2330 -0.7075 17 6 5.9938 -0.8469 -2.0083 18 6 6.9229 0.0073 -2.8705 19 6 7.4832 -1.1802 -2.0844 20 6 5.0169 -1.7824 -2.7272 21 6 3.7072 -1.0265 -2.9825 22 1 -0.3632 0.5881 -0.8428 23 1 -0.3634 0.4357 0.9307 24 1 -0.3633 -1.0239 -0.0880 25 1 0.7087 1.1614 3.4843 26 1 4.3407 1.3719 -1.6259 27 1 3.6778 0.8057 -0.0714 28 1 5.2940 -1.0215 0.0249 29 1 6.1963 0.4759 -0.3162 30 1 6.8435 -0.0978 -3.9525 31 1 7.1646 1.0076 -2.5115 32 1 8.0935 -0.9609 -1.2083 33 1 7.7724 -2.0666 -2.6489 34 1 4.8199 -2.6544 -2.1036 35 1 5.4454 -2.1018 -3.6771 36 1 2.9505 -1.7202 -3.3486 37 1 3.8734 -0.2433 -3.7222 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597201981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = -24.077204 kcal Electronic energy + Delta-G solvation = -17667.132647 eV Core-core repulsion = 15023.604713 eV Total energy + Delta-G solvation = -2643.527935 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67471 -37.93377 -34.68985 -33.85862 -31.16753 -30.10415 -29.14426 -25.22802 -23.92195 -23.17281 -22.29540 -21.51972 -19.16452 -17.65329 -16.37994 -16.24615 -15.30265 -15.18994 -14.43650 -14.37081 -13.95243 -13.46967 -13.02165 -12.89441 -12.46755 -11.97977 -11.92453 -11.56281 -11.41191 -11.29650 -11.02316 -10.92893 -10.80415 -10.49910 -10.30687 -10.23822 -10.02349 -9.82274 -9.63499 -9.02060 -8.60141 -8.32771 -7.89635 -6.10994 -4.19395 3.24440 3.33025 3.36987 3.70235 3.82252 3.92595 4.38939 4.72377 4.87541 4.99575 5.09313 5.20087 5.43182 5.56274 5.65104 5.65475 5.76559 5.91037 5.94293 6.00636 6.09296 6.14938 6.18265 6.33543 6.42575 6.48649 6.61303 6.84306 7.03467 7.14973 7.32391 7.58601 7.76712 7.96957 8.19997 8.33809 8.81628 9.26067 9.46512 10.94492 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025149 B = 0.008392 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.101786 B = 3335.636989 C = 4006.240926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.529 3.471 13 O -0.568 6.568 14 N -0.618 5.618 15 C 0.114 3.886 16 C -0.095 4.095 17 C -0.117 4.117 18 C -0.175 4.175 19 C -0.179 4.179 20 C -0.094 4.094 21 C 0.113 3.887 22 H 0.009 0.991 23 H 0.088 0.912 24 H 0.037 0.963 25 H 0.263 0.737 26 H 0.053 0.947 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.794 0.328 -7.566 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.321 3.679 13 O -0.446 6.446 14 N -0.352 5.352 15 C -0.009 4.009 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.212 4.212 19 C -0.216 4.216 20 C -0.132 4.132 21 C -0.010 4.010 22 H 0.028 0.972 23 H 0.107 0.893 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.321 0.007 -7.716 12.887 hybrid contribution 0.537 -0.433 0.809 1.063 sum 10.858 -0.426 -6.907 12.876 Atomic orbital electron populations 1.21625 0.96254 0.99722 1.00810 1.18921 0.94645 0.96232 0.89313 0.93576 1.20797 1.31786 1.12622 0.89224 0.92383 1.24911 0.94812 0.94916 0.98943 1.69892 1.36059 1.22694 1.23640 0.86464 0.78751 0.79718 0.82714 1.19691 1.20860 1.20837 1.21980 0.79217 0.81468 0.85224 1.90508 1.57148 1.35027 1.61961 1.48102 1.16500 1.47294 1.23334 1.21792 0.89773 0.90777 0.98591 1.21599 0.96920 1.00058 0.94723 1.21486 0.90715 1.01184 0.98299 1.22990 1.04528 0.95768 0.97951 1.22969 0.96452 0.99468 1.02697 1.21498 0.94760 0.97570 0.99414 1.21364 0.95589 0.97232 0.86814 0.97212 0.89307 0.94358 0.92734 0.92840 0.86912 0.90567 0.91287 0.89213 0.88972 0.89002 0.89221 0.91188 0.91558 0.89504 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.66 37.16 0.32 -2.91 16 2 C 0.03 0.75 1.79 -92.92 -0.17 0.58 16 3 H 0.05 1.17 6.66 -51.93 -0.35 0.82 16 4 C -0.51 -13.50 7.88 -34.44 -0.27 -13.77 16 5 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 6 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 7 N -0.88 -24.16 11.29 55.43 0.63 -23.54 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.53 12.58 6.73 -10.99 -0.07 12.50 16 13 O -0.57 -14.93 15.38 5.55 0.09 -14.85 16 14 N -0.62 -12.02 2.91 -172.41 -0.50 -12.52 16 15 C 0.11 1.94 6.20 -3.41 -0.02 1.92 16 16 C -0.09 -1.42 5.85 -26.20 -0.15 -1.57 16 17 C -0.12 -1.55 1.94 -154.49 -0.30 -1.85 16 18 C -0.18 -1.94 9.94 -26.79 -0.27 -2.21 16 19 C -0.18 -2.00 9.99 -26.80 -0.27 -2.27 16 20 C -0.09 -1.33 5.83 -26.46 -0.15 -1.48 16 21 C 0.11 1.86 6.44 -3.67 -0.02 1.83 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 24 H 0.04 1.00 7.69 -51.93 -0.40 0.60 16 25 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.11 2.20 5.20 -51.93 -0.27 1.93 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.09 1.55 6.96 -51.93 -0.36 1.19 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -29.34 294.97 -7.71 -37.05 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.87 Total: 1.28 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.47 Total: -7.54 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.12 Total: -36.06 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.34 -7.71 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597201981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.969 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds