Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47322 * 2 1 4 4 C 1.50698 * 109.47115 * 119.99935 * 2 1 3 5 5 H 1.08005 * 120.00282 * 120.00109 * 4 2 1 6 6 C 1.37876 * 120.00014 * 299.99877 * 4 2 1 7 7 N 1.31520 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46624 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47092 * 119.99655 * 8 6 4 11 11 H 1.48500 * 109.47445 * 240.00314 * 8 6 4 12 12 C 1.50699 * 109.47260 * 239.99746 * 2 1 3 13 13 O 1.21284 * 119.99986 * 335.00114 * 12 2 1 14 14 N 1.34774 * 120.00339 * 155.00122 * 12 2 1 15 15 C 1.46849 * 120.37820 * 4.91485 * 14 12 2 16 16 C 1.53842 * 108.55029 * 123.06648 * 15 14 12 17 17 C 1.53188 * 108.70524 * 51.53215 * 16 15 14 18 18 C 1.52848 * 117.65611 * 89.89683 * 17 16 15 19 19 C 1.52820 * 117.70904 * 158.75431 * 17 16 15 20 20 C 1.53176 * 115.08002 * 304.41682 * 17 16 15 21 21 C 1.46837 * 120.38453 * 185.19533 * 14 12 2 22 22 H 1.08996 * 109.46699 * 55.09305 * 1 2 3 23 23 H 1.08999 * 109.47325 * 295.08820 * 1 2 3 24 24 H 1.09000 * 109.47144 * 175.09008 * 1 2 3 25 25 H 0.96993 * 120.00515 * 180.02562 * 7 6 4 26 26 H 1.08991 * 109.58207 * 242.90431 * 15 14 12 27 27 H 1.08997 * 109.57871 * 3.31038 * 15 14 12 28 28 H 1.08998 * 109.72537 * 291.70556 * 16 15 14 29 29 H 1.08993 * 109.62178 * 171.30431 * 16 15 14 30 30 H 1.08997 * 117.50208 * 215.17824 * 18 17 16 31 31 H 1.08994 * 117.50815 * 0.23667 * 18 17 16 32 32 H 1.08998 * 117.50361 * 359.85639 * 19 17 16 33 33 H 1.08995 * 117.50267 * 144.87104 * 19 17 16 34 34 H 1.09000 * 109.59231 * 295.66294 * 20 17 16 35 35 H 1.08996 * 109.70816 * 175.29942 * 20 17 16 36 36 H 1.08997 * 109.58138 * 356.69338 * 21 14 12 37 37 H 1.09000 * 109.58220 * 116.96336 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2870 3.6039 10 1 3.1466 -0.1872 4.8165 11 1 1.1660 -1.5865 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 1.3370 -1.5394 -1.7784 14 7 3.2543 -0.4247 -1.7219 15 6 4.1458 0.4969 -1.0061 16 6 5.4668 -0.2330 -0.7075 17 6 5.9938 -0.8469 -2.0083 18 6 6.9229 0.0073 -2.8705 19 6 7.4832 -1.1802 -2.0844 20 6 5.0169 -1.7824 -2.7272 21 6 3.7072 -1.0265 -2.9825 22 1 -0.3632 0.5881 -0.8428 23 1 -0.3634 0.4357 0.9307 24 1 -0.3633 -1.0239 -0.0880 25 1 0.7087 1.1614 3.4843 26 1 4.3407 1.3719 -1.6259 27 1 3.6778 0.8057 -0.0714 28 1 5.2940 -1.0215 0.0249 29 1 6.1963 0.4759 -0.3162 30 1 6.8435 -0.0978 -3.9525 31 1 7.1646 1.0076 -2.5115 32 1 8.0935 -0.9609 -1.2083 33 1 7.7724 -2.0666 -2.6489 34 1 4.8199 -2.6544 -2.1036 35 1 5.4454 -2.1018 -3.6771 36 1 2.9505 -1.7202 -3.3486 37 1 3.8734 -0.2433 -3.7222 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597201981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = -40.240849 kcal Electronic energy + Delta-G solvation = -17667.833555 eV Core-core repulsion = 15023.604713 eV Total energy + Delta-G solvation = -2644.228843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17669 -39.33719 -36.15399 -35.87513 -32.79522 -31.78774 -30.49182 -27.31566 -25.49723 -24.48575 -23.41095 -22.92469 -20.62113 -19.18350 -18.31870 -17.99211 -16.95886 -16.24941 -16.20903 -15.91149 -15.12083 -14.96504 -14.66942 -14.44935 -13.89875 -13.72064 -13.49532 -13.09583 -12.89057 -12.77824 -12.56172 -12.49511 -12.29655 -12.21905 -12.09863 -12.04870 -11.47629 -11.09960 -10.93165 -10.65590 -10.60460 -10.27348 -9.42020 -8.16549 -6.31779 1.40075 1.43166 1.53613 1.88944 2.29555 2.44300 2.93182 3.11887 3.70639 3.79437 3.98021 4.08848 4.15398 4.24071 4.37689 4.55987 4.64725 4.71009 4.75628 4.83427 4.87222 4.93747 4.97757 5.02787 5.08670 5.11723 5.19051 5.31619 5.36157 5.38476 5.46273 5.63303 5.86207 5.86406 6.15766 6.59061 6.71259 7.34080 7.46745 8.88864 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025149 B = 0.008392 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.101786 B = 3335.636989 C = 4006.240926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.029 3.971 3 H 0.043 0.957 4 C -0.518 4.518 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.269 1.269 11 H -0.281 1.281 12 C 0.523 3.477 13 O -0.603 6.603 14 N -0.612 5.612 15 C 0.111 3.889 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.157 4.157 19 C -0.168 4.168 20 C -0.086 4.086 21 C 0.109 3.891 22 H 0.022 0.978 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.267 0.733 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.202 0.766 -8.211 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 H 0.061 0.939 4 C -0.557 4.557 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.195 1.195 11 H -0.207 1.207 12 C 0.315 3.685 13 O -0.485 6.485 14 N -0.344 5.344 15 C -0.011 4.011 16 C -0.126 4.126 17 C -0.142 4.142 18 C -0.193 4.193 19 C -0.205 4.205 20 C -0.124 4.124 21 C -0.013 4.013 22 H 0.041 0.959 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.776 0.467 -8.372 15.282 hybrid contribution -0.188 -0.532 0.975 1.127 sum 12.587 -0.065 -7.397 14.600 Atomic orbital electron populations 1.21497 0.96923 0.98632 1.00516 1.18838 0.94209 0.96140 0.90026 0.93911 1.20840 1.32078 1.12399 0.90335 0.93876 1.25580 0.94827 0.95504 1.01384 1.69970 1.36500 1.23514 1.24515 0.85531 0.78256 0.78722 0.79331 1.19881 1.19453 1.20681 1.21669 0.80647 0.81288 0.84936 1.90479 1.58609 1.36532 1.62920 1.48116 1.15281 1.46880 1.24143 1.21907 0.90087 0.91548 0.97604 1.21496 0.96189 0.99532 0.95422 1.21356 0.91834 1.02915 0.98131 1.23088 1.01760 0.96014 0.98474 1.23050 0.94159 1.00181 1.03066 1.21417 0.93837 0.96558 1.00609 1.21603 0.96218 0.97849 0.85633 0.95886 0.90748 0.96015 0.92347 0.90050 0.89863 0.93491 0.88976 0.87749 0.88008 0.88408 0.88094 0.93652 0.88499 0.91516 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 8.66 71.98 0.62 -5.58 16 2 C 0.03 1.50 1.79 -12.29 -0.02 1.47 16 3 H 0.04 2.23 6.66 -2.39 -0.02 2.21 16 4 C -0.52 -28.38 7.88 25.60 0.20 -28.18 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.47 5.29 84.65 0.45 1.92 16 7 N -0.91 -49.95 11.29 21.45 0.24 -49.71 16 8 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.52 25.52 6.73 87.66 0.59 26.11 16 13 O -0.60 -32.73 15.38 -3.04 -0.05 -32.78 16 14 N -0.61 -23.78 2.91 -817.76 -2.38 -26.16 16 15 C 0.11 3.70 6.20 86.60 0.54 4.24 16 16 C -0.09 -2.52 5.85 30.94 0.18 -2.34 16 17 C -0.14 -3.38 1.94 -52.17 -0.10 -3.48 16 18 C -0.16 -2.76 9.94 30.56 0.30 -2.46 16 19 C -0.17 -3.11 9.99 30.55 0.31 -2.81 16 20 C -0.09 -2.26 5.83 30.77 0.18 -2.09 16 21 C 0.11 3.45 6.44 86.43 0.56 4.01 16 22 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 4.11 5.95 -2.39 -0.01 4.10 16 24 H 0.02 1.16 7.69 -2.39 -0.02 1.14 16 25 H 0.27 13.86 8.31 -92.71 -0.77 13.08 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 3.30 5.20 -2.39 -0.01 3.29 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 2.17 8.10 -2.39 -0.02 2.15 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.96 8.11 -2.39 -0.02 1.94 16 36 H 0.07 2.39 6.96 -2.39 -0.02 2.37 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -64.05 294.97 4.68 -59.38 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.04 Total: 13.81 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 3.80 Total: -9.18 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -2.14 Total: -75.86 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -64.05 4.68 -59.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597201981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.134 kcal (2) G-P(sol) polarization free energy of solvation -64.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds