Wall clock time and date at job start Mon Mar 30 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46854 * 119.99490 * 2 1 3 5 5 H 1.07997 * 120.00031 * 120.00412 * 4 2 1 6 6 C 1.37881 * 120.00015 * 300.00209 * 4 2 1 7 7 N 1.31509 * 119.99965 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47346 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46905 * 299.99965 * 8 6 4 12 12 C 1.50692 * 109.47572 * 239.99492 * 2 1 3 13 13 O 1.21279 * 120.00188 * 266.69782 * 12 2 1 14 14 N 1.34781 * 119.99804 * 86.41477 * 12 2 1 15 15 C 1.48153 * 127.83585 * 174.74269 * 14 12 2 16 16 C 1.53978 * 104.81547 * 219.54220 * 15 14 12 17 17 H 1.09002 * 118.03165 * 115.99379 * 16 15 14 18 18 C 1.54280 * 105.00302 * 336.43459 * 16 15 14 19 19 H 1.09001 * 121.81550 * 136.72846 * 18 16 15 20 20 C 1.48137 * 127.83917 * 355.07282 * 14 12 2 21 21 C 1.52996 * 59.72471 * 245.66840 * 18 16 15 22 22 C 1.53000 * 117.44329 * 107.65009 * 21 18 16 23 23 C 1.53003 * 117.44241 * 252.35366 * 21 18 16 24 24 H 1.09001 * 109.47707 * 301.74274 * 1 2 3 25 25 H 1.09004 * 109.46835 * 61.74376 * 1 2 3 26 26 H 1.09001 * 109.47446 * 181.73821 * 1 2 3 27 27 H 0.97000 * 119.99715 * 180.02562 * 7 6 4 28 28 H 1.09003 * 110.40690 * 338.37641 * 15 14 12 29 29 H 1.09001 * 110.40237 * 100.80399 * 15 14 12 30 30 H 1.09006 * 110.40788 * 259.19379 * 20 14 12 31 31 H 1.09003 * 110.41259 * 21.50613 * 20 14 12 32 32 H 1.08991 * 109.47014 * 66.79990 * 22 21 18 33 33 H 1.08997 * 109.47022 * 186.80036 * 22 21 18 34 34 H 1.09001 * 109.47060 * 306.79712 * 22 21 18 35 35 H 1.09002 * 109.47298 * 59.99773 * 23 21 18 36 36 H 1.09006 * 109.47068 * 180.02562 * 23 21 18 37 37 H 1.09004 * 109.46801 * 299.99684 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8266 -0.4195 5.2205 11 1 1.8278 -2.5195 4.0083 12 6 2.0324 -0.7105 -1.2303 13 8 2.2916 -1.8943 -1.1836 14 7 2.1883 -0.0315 -2.3841 15 6 2.7650 -0.5232 -3.6571 16 6 3.5996 0.6549 -4.1923 17 1 4.6779 0.5212 -4.2790 18 6 2.9857 1.9095 -3.5370 19 1 3.6067 2.7036 -3.1225 20 6 1.8279 1.3776 -2.6651 21 6 2.8989 1.7094 -5.0513 22 6 1.5329 1.3472 -5.6376 23 6 3.7783 2.5996 -5.9318 24 1 -0.3634 0.5406 0.8739 25 1 -0.3633 0.4865 -0.9053 26 1 -0.3634 -1.0272 0.0312 27 1 0.7085 1.1614 3.4843 28 1 3.4028 -1.3884 -3.4763 29 1 1.9720 -0.7750 -4.3613 30 1 0.8863 1.4274 -3.2121 31 1 1.7575 1.9444 -1.7367 32 1 0.8507 2.1884 -5.5159 33 1 1.6417 1.1181 -6.6977 34 1 1.1332 0.4769 -5.1170 35 1 4.8264 2.4388 -5.6790 36 1 3.6144 2.3494 -6.9800 37 1 3.5203 3.6452 -5.7636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597301150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:42 Heat of formation + Delta-G solvation = -8.830336 kcal Electronic energy + Delta-G solvation = -17329.455196 eV Core-core repulsion = 14686.588415 eV Total energy + Delta-G solvation = -2642.866781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.41002 -37.94841 -34.01803 -33.70607 -30.60005 -29.18418 -28.20813 -27.79926 -25.15910 -24.63847 -21.89612 -20.05899 -18.85395 -18.23598 -16.46108 -16.02701 -15.38602 -14.97578 -14.61810 -14.22677 -13.97852 -13.51207 -12.86626 -12.64091 -12.44185 -12.27076 -12.24829 -11.74852 -11.56647 -11.47824 -11.18796 -11.16738 -10.96657 -10.68360 -10.64401 -10.26854 -10.00656 -9.79935 -9.55875 -8.98223 -8.57614 -8.30425 -8.06272 -6.02593 -4.05944 3.36674 3.38983 3.43585 3.48636 3.66553 3.71395 4.46789 4.54108 4.65580 4.76383 4.97616 5.20335 5.28269 5.30525 5.50879 5.55298 5.64670 5.75784 5.80151 5.82324 5.90482 6.00060 6.05888 6.10756 6.21525 6.26583 6.36410 6.66911 6.82654 6.91910 7.01708 7.49040 7.77933 8.01270 8.18064 8.44202 8.99201 9.23775 9.58672 11.04940 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043572 B = 0.005848 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.463177 B = 4786.848380 C = 4875.784621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.037 3.963 3 H 0.046 0.954 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.543 3.457 13 O -0.547 6.547 14 N -0.633 5.633 15 C 0.126 3.874 16 C -0.169 4.169 17 H 0.115 0.885 18 C -0.167 4.167 19 H 0.118 0.882 20 C 0.130 3.870 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.113 4.113 24 H 0.093 0.907 25 H 0.011 0.989 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 5.556 -15.222 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.016 3.984 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.086 0.914 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.336 3.664 13 O -0.423 6.423 14 N -0.370 5.370 15 C 0.003 3.997 16 C -0.188 4.188 17 H 0.133 0.867 18 C -0.187 4.187 19 H 0.136 0.864 20 C 0.007 3.993 21 C -0.092 4.092 22 C -0.184 4.184 23 C -0.170 4.170 24 H 0.112 0.888 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.098 4.922 -14.888 15.820 hybrid contribution 0.464 -0.304 0.827 0.995 sum 2.562 4.619 -14.061 15.020 Atomic orbital electron populations 1.21688 0.96154 1.00311 1.00507 1.18837 0.94270 0.96544 0.88762 0.93636 1.21030 1.31293 1.12501 0.89098 0.91390 1.24929 0.95070 0.95046 0.99034 1.69862 1.36928 1.23014 1.23668 0.86502 0.79199 0.79821 0.81601 1.20233 1.21290 1.20113 1.21810 0.75022 0.87002 0.82591 1.90538 1.51271 1.16264 1.84235 1.49621 1.63762 1.12435 1.11141 1.21570 0.96325 0.95735 0.86084 1.23825 0.99332 0.91247 1.04435 0.86717 1.23860 1.01319 1.00430 0.93062 0.86420 1.21758 0.95374 0.82972 0.99231 1.21604 0.97222 0.99306 0.91115 1.21481 0.94533 1.01965 1.00408 1.21304 0.98413 0.98670 0.98586 0.88838 0.97006 0.94754 0.92861 0.90206 0.91463 0.91378 0.89145 0.91931 0.92217 0.91509 0.92405 0.92012 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.93 37.16 0.33 -2.79 16 2 C 0.04 0.95 2.14 -92.93 -0.20 0.75 16 3 H 0.05 1.19 6.80 -51.93 -0.35 0.84 16 4 C -0.50 -14.53 8.33 -34.44 -0.29 -14.82 16 5 H 0.07 2.07 7.06 -52.49 -0.37 1.70 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.35 11.34 55.43 0.63 -24.72 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.54 13.22 6.99 -10.99 -0.08 13.14 16 13 O -0.55 -15.08 16.17 5.56 0.09 -14.99 16 14 N -0.63 -12.20 3.32 -169.56 -0.56 -12.76 16 15 C 0.13 2.00 6.46 -2.62 -0.02 1.98 16 16 C -0.17 -2.20 6.69 -89.44 -0.60 -2.80 16 17 H 0.11 1.40 8.13 -51.93 -0.42 0.98 16 18 C -0.17 -2.18 6.82 -89.22 -0.61 -2.79 16 19 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 20 C 0.13 2.03 6.41 -2.41 -0.02 2.02 16 21 C -0.09 -0.99 2.67 -154.51 -0.41 -1.40 16 22 C -0.13 -1.27 8.53 37.16 0.32 -0.95 16 23 C -0.11 -0.96 9.84 37.16 0.37 -0.60 16 24 H 0.09 2.43 6.12 -51.93 -0.32 2.12 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 29 H 0.07 0.98 5.97 -51.93 -0.31 0.67 16 30 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 31 H 0.09 1.51 6.61 -51.93 -0.34 1.16 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 34 H 0.07 0.75 4.94 -51.93 -0.26 0.50 16 35 H 0.06 0.48 7.96 -51.93 -0.41 0.07 16 36 H 0.06 0.46 8.01 -51.93 -0.42 0.05 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -31.47 294.14 -7.36 -38.83 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.63 Total: -1.15 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.29 Total: -6.65 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.07 Total: -37.49 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.09 Total: -14.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.47 -7.36 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597301150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.002 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds