Wall clock time and date at job start Mon Mar 30 2020 03:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46854 * 119.99490 * 2 1 3 5 5 H 1.07997 * 120.00031 * 120.00412 * 4 2 1 6 6 C 1.37881 * 120.00015 * 300.00209 * 4 2 1 7 7 N 1.31509 * 119.99965 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99854 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47346 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46905 * 299.99965 * 8 6 4 12 12 C 1.50692 * 109.47572 * 239.99492 * 2 1 3 13 13 O 1.21279 * 120.00188 * 266.69782 * 12 2 1 14 14 N 1.34781 * 119.99804 * 86.41477 * 12 2 1 15 15 C 1.48153 * 127.83585 * 174.74269 * 14 12 2 16 16 C 1.53978 * 104.81547 * 219.54220 * 15 14 12 17 17 H 1.09002 * 118.03165 * 115.99379 * 16 15 14 18 18 C 1.54280 * 105.00302 * 336.43459 * 16 15 14 19 19 H 1.09001 * 121.81550 * 136.72846 * 18 16 15 20 20 C 1.48137 * 127.83917 * 355.07282 * 14 12 2 21 21 C 1.52996 * 59.72471 * 245.66840 * 18 16 15 22 22 C 1.53000 * 117.44329 * 107.65009 * 21 18 16 23 23 C 1.53003 * 117.44241 * 252.35366 * 21 18 16 24 24 H 1.09001 * 109.47707 * 301.74274 * 1 2 3 25 25 H 1.09004 * 109.46835 * 61.74376 * 1 2 3 26 26 H 1.09001 * 109.47446 * 181.73821 * 1 2 3 27 27 H 0.97000 * 119.99715 * 180.02562 * 7 6 4 28 28 H 1.09003 * 110.40690 * 338.37641 * 15 14 12 29 29 H 1.09001 * 110.40237 * 100.80399 * 15 14 12 30 30 H 1.09006 * 110.40788 * 259.19379 * 20 14 12 31 31 H 1.09003 * 110.41259 * 21.50613 * 20 14 12 32 32 H 1.08991 * 109.47014 * 66.79990 * 22 21 18 33 33 H 1.08997 * 109.47022 * 186.80036 * 22 21 18 34 34 H 1.09001 * 109.47060 * 306.79712 * 22 21 18 35 35 H 1.09002 * 109.47298 * 59.99773 * 23 21 18 36 36 H 1.09006 * 109.47068 * 180.02562 * 23 21 18 37 37 H 1.09004 * 109.46801 * 299.99684 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8266 -0.4195 5.2205 11 1 1.8278 -2.5195 4.0083 12 6 2.0324 -0.7105 -1.2303 13 8 2.2916 -1.8943 -1.1836 14 7 2.1883 -0.0315 -2.3841 15 6 2.7650 -0.5232 -3.6571 16 6 3.5996 0.6549 -4.1923 17 1 4.6779 0.5212 -4.2790 18 6 2.9857 1.9095 -3.5370 19 1 3.6067 2.7036 -3.1225 20 6 1.8279 1.3776 -2.6651 21 6 2.8989 1.7094 -5.0513 22 6 1.5329 1.3472 -5.6376 23 6 3.7783 2.5996 -5.9318 24 1 -0.3634 0.5406 0.8739 25 1 -0.3633 0.4865 -0.9053 26 1 -0.3634 -1.0272 0.0312 27 1 0.7085 1.1614 3.4843 28 1 3.4028 -1.3884 -3.4763 29 1 1.9720 -0.7750 -4.3613 30 1 0.8863 1.4274 -3.2121 31 1 1.7575 1.9444 -1.7367 32 1 0.8507 2.1884 -5.5159 33 1 1.6417 1.1181 -6.6977 34 1 1.1332 0.4769 -5.1170 35 1 4.8264 2.4388 -5.6790 36 1 3.6144 2.3494 -6.9800 37 1 3.5203 3.6452 -5.7636 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597301150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:42 Heat of formation + Delta-G solvation = -27.652686 kcal Electronic energy + Delta-G solvation = -17330.271394 eV Core-core repulsion = 14686.588415 eV Total energy + Delta-G solvation = -2643.682979 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.67859 -39.66958 -35.82218 -35.39691 -32.59916 -30.31003 -29.50352 -28.58870 -27.30230 -26.06908 -23.70421 -21.23403 -20.34834 -19.40932 -18.42538 -17.85952 -16.88165 -16.61898 -15.95210 -15.83233 -15.08747 -14.99554 -14.62500 -14.28803 -13.66335 -13.43063 -13.19763 -13.11792 -12.96961 -12.82471 -12.76714 -12.66571 -12.63363 -12.32354 -12.28817 -12.07360 -12.02978 -11.14250 -10.91786 -10.58557 -10.51258 -10.28114 -9.62691 -8.18615 -6.30043 1.39199 1.41522 1.49689 1.82665 2.10475 2.43807 2.49491 3.10405 3.49496 3.56128 3.77501 4.05199 4.16087 4.19964 4.26333 4.48381 4.61510 4.65262 4.72361 4.79041 4.86955 4.89805 4.95702 4.99727 5.09844 5.12474 5.15455 5.17199 5.31282 5.35675 5.45482 5.53602 5.67260 5.88602 6.15529 6.62983 6.76145 7.33340 7.42616 8.87373 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043572 B = 0.005848 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.463177 B = 4786.848380 C = 4875.784621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.539 3.461 13 O -0.593 6.593 14 N -0.632 5.632 15 C 0.121 3.879 16 C -0.177 4.177 17 H 0.124 0.876 18 C -0.175 4.175 19 H 0.126 0.874 20 C 0.124 3.876 21 C -0.061 4.061 22 C -0.130 4.130 23 C -0.112 4.112 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.019 0.981 27 H 0.267 0.733 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 6.990 -16.824 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.014 3.986 3 H 0.057 0.943 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.195 1.195 11 H -0.203 1.203 12 C 0.332 3.668 13 O -0.473 6.473 14 N -0.366 5.366 15 C -0.001 4.001 16 C -0.196 4.196 17 H 0.142 0.858 18 C -0.194 4.194 19 H 0.144 0.856 20 C 0.002 3.998 21 C -0.062 4.062 22 C -0.187 4.187 23 C -0.169 4.169 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.218 6.414 -16.535 17.874 hybrid contribution 0.413 -0.693 1.248 1.486 sum 2.631 5.721 -15.288 16.534 Atomic orbital electron populations 1.21499 0.95197 0.99365 1.01239 1.18739 0.95074 0.95793 0.88997 0.94338 1.21158 1.32244 1.12507 0.91205 0.94003 1.25598 0.95027 0.95698 1.01376 1.69931 1.36801 1.23399 1.24586 0.85616 0.78747 0.78659 0.78656 1.19933 1.19518 1.20330 1.21402 0.75223 0.86453 0.83771 1.90498 1.53598 1.17951 1.85291 1.49541 1.62322 1.13941 1.10818 1.21764 0.97043 0.96478 0.84798 1.23799 0.99607 0.89928 1.06236 0.85811 1.23854 1.00365 1.00511 0.94710 0.85581 1.21974 0.97578 0.80717 0.99525 1.21760 0.97613 0.97112 0.89678 1.21542 0.94000 1.01757 1.01403 1.21359 0.97975 0.98640 0.98897 0.90522 0.93844 0.96212 0.92359 0.92144 0.89625 0.89371 0.90547 0.90776 0.90193 0.93055 0.92156 0.90306 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 8.93 71.98 0.64 -5.02 16 2 C 0.04 1.86 2.14 -12.29 -0.03 1.84 16 3 H 0.04 2.07 6.80 -2.39 -0.02 2.06 16 4 C -0.53 -31.94 8.33 25.60 0.21 -31.73 16 5 H 0.04 2.67 7.06 -2.91 -0.02 2.65 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -51.61 11.34 21.45 0.24 -51.37 16 8 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 C 0.54 27.07 6.99 87.65 0.61 27.68 16 13 O -0.59 -34.13 16.17 -3.03 -0.05 -34.18 16 14 N -0.63 -24.47 3.32 -808.75 -2.68 -27.16 16 15 C 0.12 3.79 6.46 86.39 0.56 4.35 16 16 C -0.18 -4.26 6.69 -10.03 -0.07 -4.32 16 17 H 0.12 2.78 8.13 -2.39 -0.02 2.76 16 18 C -0.18 -4.19 6.82 -9.89 -0.07 -4.26 16 19 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 20 C 0.12 3.75 6.41 86.54 0.55 4.30 16 21 C -0.06 -1.11 2.67 -52.18 -0.14 -1.25 16 22 C -0.13 -2.13 8.53 71.98 0.61 -1.52 16 23 C -0.11 -1.45 9.84 71.98 0.71 -0.74 16 24 H 0.08 4.03 6.12 -2.39 -0.01 4.02 16 25 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 27 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 29 H 0.09 2.38 5.97 -2.39 -0.01 2.37 16 30 H 0.09 2.32 6.75 -2.38 -0.02 2.30 16 31 H 0.08 2.53 6.61 -2.39 -0.02 2.51 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.02 8.04 -2.39 -0.02 1.00 16 34 H 0.05 1.01 4.94 -2.39 -0.01 1.00 16 35 H 0.06 0.78 7.96 -2.39 -0.02 0.77 16 36 H 0.08 0.81 8.01 -2.38 -0.02 0.79 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.41 294.14 4.64 -64.78 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.05 Total: 9.33 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.05 Total: -8.92 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -2.44 Total: -78.53 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.05 Total: -34.18 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.41 4.64 -64.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597301150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.124 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds