Wall clock time and date at job start Mon Mar 30 2020 03:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46927 * 2 1 4 4 C 1.50698 * 109.47026 * 239.99680 * 2 1 3 5 5 H 1.08000 * 120.00537 * 275.10827 * 4 2 1 6 6 C 1.37879 * 119.99784 * 95.10990 * 4 2 1 7 7 N 1.31512 * 119.99977 * 184.91201 * 6 4 2 8 8 Si 1.86799 * 120.00163 * 4.90522 * 6 4 2 9 9 H 1.48496 * 109.47065 * 84.82486 * 8 6 4 10 10 H 1.48496 * 109.47255 * 204.82694 * 8 6 4 11 11 H 1.48504 * 109.47276 * 324.82612 * 8 6 4 12 12 C 1.50701 * 109.47001 * 119.99805 * 2 1 3 13 13 O 1.21283 * 119.99786 * 119.99546 * 12 2 1 14 14 N 1.34766 * 120.00302 * 300.00295 * 12 2 1 15 15 C 1.46505 * 120.00386 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47269 * 179.97438 * 15 14 12 17 17 C 1.53003 * 115.56184 * 179.89467 * 16 15 14 18 18 C 1.52997 * 117.49580 * 34.43538 * 17 16 15 19 19 C 1.52998 * 117.49472 * 325.77949 * 17 16 15 20 20 C 1.52997 * 117.50142 * 325.58657 * 16 15 14 21 21 C 1.52998 * 60.00163 * 107.48548 * 20 16 15 22 22 H 1.08995 * 109.47324 * 175.07612 * 1 2 3 23 23 H 1.09006 * 109.46789 * 295.07893 * 1 2 3 24 24 H 1.09007 * 109.46995 * 55.07329 * 1 2 3 25 25 H 0.96999 * 119.99903 * 179.97438 * 7 6 4 26 26 H 0.97005 * 120.00232 * 359.97438 * 14 12 2 27 27 H 1.09004 * 109.46574 * 59.99939 * 15 14 12 28 28 H 1.08992 * 109.46954 * 299.99778 * 15 14 12 29 29 H 1.09000 * 115.55200 * 180.10944 * 17 16 15 30 30 H 1.08994 * 117.50337 * 0.02562 * 18 17 16 31 31 H 1.09004 * 117.49469 * 145.02178 * 18 17 16 32 32 H 1.09005 * 117.49412 * 214.97805 * 19 17 16 33 33 H 1.09001 * 117.50311 * 359.97438 * 19 17 16 34 34 H 1.08995 * 117.50084 * 359.97438 * 20 16 15 35 35 H 1.09001 * 117.50096 * 214.97615 * 20 16 15 36 36 H 1.09001 * 117.49777 * 107.48843 * 21 20 16 37 37 H 1.08998 * 117.50292 * 252.48423 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1338 -1.7857 -1.2296 6 6 2.3624 0.0122 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3183 1.8792 -2.3157 9 1 3.6039 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2030 2.3288 -1.4442 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4545 15 6 2.1946 -0.9409 3.6508 16 6 1.6852 -0.2192 4.9000 17 6 2.1133 -0.8299 6.2359 18 6 3.5014 -1.4691 6.3079 19 6 2.2511 -2.3521 6.3049 20 6 1.5492 1.3031 4.8304 21 6 0.2981 0.4225 4.8287 22 1 -0.3634 -1.0238 -0.0882 23 1 -0.3633 0.4356 0.9308 24 1 -0.3633 0.5884 -0.8426 25 1 2.9400 -0.1044 -4.2543 26 1 1.1493 0.5389 2.5436 27 1 3.2846 -0.9413 3.6509 28 1 1.8309 -1.9683 3.6506 29 1 1.7487 -0.3167 7.1258 30 1 4.1099 -1.4542 5.4037 31 1 4.0500 -1.3767 7.2453 32 1 1.9776 -2.8403 7.2403 33 1 2.0364 -2.9185 5.3987 34 1 1.8231 1.7906 3.8948 35 1 1.7648 1.8696 5.7363 36 1 -0.3095 0.4097 5.7336 37 1 -0.2518 0.3309 3.8921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597430213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:15 Heat of formation + Delta-G solvation = 6.020183 kcal Electronic energy + Delta-G solvation = -17020.536718 eV Core-core repulsion = 14378.313905 eV Total energy + Delta-G solvation = -2642.222814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82955 -38.23389 -35.62793 -33.62502 -33.07605 -31.19963 -27.08732 -25.23725 -23.66072 -22.82754 -22.12306 -22.04823 -19.50520 -18.64214 -17.04098 -16.44530 -16.13956 -15.06590 -14.71348 -14.63894 -14.15357 -13.65666 -13.31097 -13.13643 -12.67041 -12.40631 -12.17901 -11.71522 -11.55362 -11.40028 -11.21848 -11.14692 -11.03507 -10.85875 -10.74224 -10.24959 -10.11610 -9.80215 -9.45583 -9.15561 -8.68007 -8.52609 -8.41978 -6.05031 -4.04097 3.25289 3.31527 3.34415 3.35142 3.67348 3.82425 4.03974 4.32700 4.39594 4.60961 4.76737 4.82241 4.96671 5.06576 5.19942 5.25359 5.53211 5.55271 5.72181 5.76367 5.81288 5.90516 5.94533 6.02049 6.05359 6.08613 6.16324 6.18462 6.40330 6.54116 6.84028 7.03733 7.19211 7.57365 8.17523 8.56585 9.10775 9.19052 9.54710 11.08369 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037196 B = 0.005904 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.588218 B = 4741.736181 C = 5038.592272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 H 0.053 0.947 4 C -0.494 4.494 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.518 3.482 13 O -0.530 6.530 14 N -0.750 5.750 15 C 0.155 3.845 16 C -0.106 4.106 17 C -0.112 4.112 18 C -0.179 4.179 19 C -0.178 4.178 20 C -0.173 4.173 21 C -0.172 4.172 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.054 0.946 25 H 0.264 0.736 26 H 0.393 0.607 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 4.192 19.482 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 H 0.071 0.929 4 C -0.532 4.532 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.190 1.190 12 C 0.306 3.694 13 O -0.404 6.404 14 N -0.407 5.407 15 C 0.031 3.969 16 C -0.106 4.106 17 C -0.131 4.131 18 C -0.215 4.215 19 C -0.215 4.215 20 C -0.210 4.210 21 C -0.209 4.209 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.228 0.772 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.471 3.468 19.165 19.784 hybrid contribution -0.204 1.436 0.045 1.451 sum -3.675 4.904 19.210 20.164 Atomic orbital electron populations 1.21951 0.96838 1.01382 0.98952 1.19345 0.94027 0.96920 0.92377 0.92887 1.20747 1.42902 0.96186 0.93373 0.89628 1.25029 0.94689 0.97984 0.95348 1.69885 1.46108 1.35656 1.01663 0.86961 0.78967 0.86777 0.77440 1.20137 1.21249 1.18969 1.21756 0.79065 0.84610 0.83933 1.90580 1.36933 1.26295 1.86572 1.46467 1.55751 1.32771 1.05702 1.20612 0.98727 0.95542 0.82009 1.21071 1.00460 0.94745 0.94346 1.21543 1.00579 0.95189 0.95749 1.23024 0.90824 1.04255 1.03437 1.23023 1.02267 0.92791 1.03432 1.23078 1.01953 0.92438 1.03551 1.23079 0.90567 1.03729 1.03561 0.92875 0.95649 0.92691 0.92565 0.77162 0.91546 0.91526 0.87645 0.88260 0.88863 0.88863 0.88262 0.88299 0.88577 0.88583 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.12 37.16 0.34 -2.34 16 2 C 0.00 -0.11 2.30 -92.92 -0.21 -0.33 16 3 H 0.05 1.21 5.29 -51.93 -0.27 0.94 16 4 C -0.49 -14.34 8.36 -34.44 -0.29 -14.63 16 5 H 0.09 2.82 7.61 -52.49 -0.40 2.42 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 8 Si 0.87 21.07 26.99 -169.99 -4.59 16.48 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -5.89 6.82 56.52 0.39 -5.50 16 12 C 0.52 11.65 7.15 -10.99 -0.08 11.57 16 13 O -0.53 -14.11 15.77 5.56 0.09 -14.03 16 14 N -0.75 -12.72 4.85 -60.29 -0.29 -13.01 16 15 C 0.16 2.32 4.84 -4.04 -0.02 2.30 16 16 C -0.11 -1.20 2.51 -154.51 -0.39 -1.59 16 17 C -0.11 -1.11 5.85 -90.62 -0.53 -1.64 16 18 C -0.18 -1.76 9.92 -26.70 -0.26 -2.02 16 19 C -0.18 -1.74 9.92 -26.70 -0.26 -2.01 16 20 C -0.17 -1.78 9.47 -26.73 -0.25 -2.03 16 21 C -0.17 -1.75 9.47 -26.73 -0.25 -2.00 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.02 0.40 7.43 -51.93 -0.39 0.02 16 24 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.39 5.68 4.94 -40.82 -0.20 5.48 16 27 H 0.07 1.06 6.91 -51.93 -0.36 0.70 16 28 H 0.07 1.05 6.90 -51.93 -0.36 0.70 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.10 6.76 -51.93 -0.35 0.75 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.09 6.75 -51.93 -0.35 0.74 16 34 H 0.10 1.08 7.02 -51.93 -0.36 0.72 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.07 7.00 -51.93 -0.36 0.70 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -32.83 298.88 -7.35 -40.18 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.52 Total: 5.63 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.31 Total: -12.75 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.48 Total: -40.02 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.59 Total: 16.48 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.83 -7.35 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597430213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.197 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds