Wall clock time and date at job start Mon Mar 30 2020 03:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46927 * 2 1 4 4 C 1.50698 * 109.47026 * 239.99680 * 2 1 3 5 5 H 1.08000 * 120.00537 * 275.10827 * 4 2 1 6 6 C 1.37879 * 119.99784 * 95.10990 * 4 2 1 7 7 N 1.31512 * 119.99977 * 184.91201 * 6 4 2 8 8 Si 1.86799 * 120.00163 * 4.90522 * 6 4 2 9 9 H 1.48496 * 109.47065 * 84.82486 * 8 6 4 10 10 H 1.48496 * 109.47255 * 204.82694 * 8 6 4 11 11 H 1.48504 * 109.47276 * 324.82612 * 8 6 4 12 12 C 1.50701 * 109.47001 * 119.99805 * 2 1 3 13 13 O 1.21283 * 119.99786 * 119.99546 * 12 2 1 14 14 N 1.34766 * 120.00302 * 300.00295 * 12 2 1 15 15 C 1.46505 * 120.00386 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47269 * 179.97438 * 15 14 12 17 17 C 1.53003 * 115.56184 * 179.89467 * 16 15 14 18 18 C 1.52997 * 117.49580 * 34.43538 * 17 16 15 19 19 C 1.52998 * 117.49472 * 325.77949 * 17 16 15 20 20 C 1.52997 * 117.50142 * 325.58657 * 16 15 14 21 21 C 1.52998 * 60.00163 * 107.48548 * 20 16 15 22 22 H 1.08995 * 109.47324 * 175.07612 * 1 2 3 23 23 H 1.09006 * 109.46789 * 295.07893 * 1 2 3 24 24 H 1.09007 * 109.46995 * 55.07329 * 1 2 3 25 25 H 0.96999 * 119.99903 * 179.97438 * 7 6 4 26 26 H 0.97005 * 120.00232 * 359.97438 * 14 12 2 27 27 H 1.09004 * 109.46574 * 59.99939 * 15 14 12 28 28 H 1.08992 * 109.46954 * 299.99778 * 15 14 12 29 29 H 1.09000 * 115.55200 * 180.10944 * 17 16 15 30 30 H 1.08994 * 117.50337 * 0.02562 * 18 17 16 31 31 H 1.09004 * 117.49469 * 145.02178 * 18 17 16 32 32 H 1.09005 * 117.49412 * 214.97805 * 19 17 16 33 33 H 1.09001 * 117.50311 * 359.97438 * 19 17 16 34 34 H 1.08995 * 117.50084 * 359.97438 * 20 16 15 35 35 H 1.09001 * 117.50096 * 214.97615 * 20 16 15 36 36 H 1.09001 * 117.49777 * 107.48843 * 21 20 16 37 37 H 1.08998 * 117.50292 * 252.48423 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1338 -1.7857 -1.2296 6 6 2.3624 0.0122 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3183 1.8792 -2.3157 9 1 3.6039 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2030 2.3288 -1.4442 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4545 15 6 2.1946 -0.9409 3.6508 16 6 1.6852 -0.2192 4.9000 17 6 2.1133 -0.8299 6.2359 18 6 3.5014 -1.4691 6.3079 19 6 2.2511 -2.3521 6.3049 20 6 1.5492 1.3031 4.8304 21 6 0.2981 0.4225 4.8287 22 1 -0.3634 -1.0238 -0.0882 23 1 -0.3633 0.4356 0.9308 24 1 -0.3633 0.5884 -0.8426 25 1 2.9400 -0.1044 -4.2543 26 1 1.1493 0.5389 2.5436 27 1 3.2846 -0.9413 3.6509 28 1 1.8309 -1.9683 3.6506 29 1 1.7487 -0.3167 7.1258 30 1 4.1099 -1.4542 5.4037 31 1 4.0500 -1.3767 7.2453 32 1 1.9776 -2.8403 7.2403 33 1 2.0364 -2.9185 5.3987 34 1 1.8231 1.7906 3.8948 35 1 1.7648 1.8696 5.7363 36 1 -0.3095 0.4097 5.7336 37 1 -0.2518 0.3309 3.8921 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597430213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:15 Heat of formation + Delta-G solvation = -15.827803 kcal Electronic energy + Delta-G solvation = -17021.484118 eV Core-core repulsion = 14378.313905 eV Total energy + Delta-G solvation = -2643.170214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11146 -39.63792 -36.55492 -35.65297 -34.56938 -33.20154 -28.40663 -27.22119 -24.80669 -23.60939 -23.58334 -22.88170 -21.16449 -19.72720 -19.13117 -17.85687 -17.37968 -16.48122 -16.23774 -15.97635 -15.66966 -15.10778 -14.64331 -14.46272 -14.11294 -14.00901 -13.83932 -13.10924 -12.96219 -12.61491 -12.51454 -12.34540 -12.20066 -12.04731 -11.97633 -11.75525 -11.65930 -11.27056 -10.91918 -10.76579 -10.48094 -10.37578 -9.88146 -8.27853 -6.34746 1.35098 1.38735 1.48821 1.86492 2.32818 2.35308 2.55868 3.08927 3.24641 3.51584 3.68824 3.96019 3.97559 4.12965 4.20001 4.21952 4.38685 4.41462 4.66339 4.71087 4.74487 4.80961 4.84694 4.88222 4.97871 5.04668 5.10840 5.14283 5.26811 5.28125 5.30984 5.48185 5.56665 5.57292 6.24553 6.63251 6.82094 7.26640 7.48636 8.90307 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037196 B = 0.005904 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.588218 B = 4741.736181 C = 5038.592272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 H 0.072 0.928 4 C -0.508 4.508 5 H 0.021 0.979 6 C 0.005 3.995 7 N -0.952 5.952 8 Si 0.947 3.053 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.222 1.222 12 C 0.516 3.484 13 O -0.585 6.585 14 N -0.724 5.724 15 C 0.156 3.844 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.185 4.185 19 C -0.183 4.183 20 C -0.165 4.165 21 C -0.163 4.163 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.267 0.733 26 H 0.410 0.590 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 7.524 22.299 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 H 0.090 0.910 4 C -0.547 4.547 5 H 0.039 0.961 6 C -0.191 4.191 7 N -0.592 5.592 8 Si 0.769 3.231 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.144 1.144 12 C 0.305 3.695 13 O -0.464 6.464 14 N -0.380 5.380 15 C 0.032 3.968 16 C -0.120 4.120 17 C -0.122 4.122 18 C -0.221 4.221 19 C -0.220 4.220 20 C -0.202 4.202 21 C -0.200 4.200 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.249 0.751 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.135 6.828 22.045 23.643 hybrid contribution 0.327 0.262 -0.811 0.913 sum -4.808 7.090 21.234 22.897 Atomic orbital electron populations 1.21835 0.93707 1.01175 1.01774 1.19339 0.96358 0.96937 0.90400 0.91003 1.20877 1.43646 0.93752 0.96391 0.96106 1.26100 0.93888 1.04767 0.94343 1.70077 1.47839 1.38454 1.02800 0.85754 0.80585 0.78316 0.78453 1.19494 1.20962 1.14421 1.21575 0.78564 0.83931 0.85441 1.90567 1.39588 1.28756 1.87492 1.46115 1.54519 1.32661 1.04669 1.20640 0.97952 0.95403 0.82814 1.20975 1.02261 0.95721 0.93088 1.21620 1.00062 0.94927 0.95610 1.23045 0.90989 1.04685 1.03422 1.23046 1.02427 0.93103 1.03448 1.23174 1.01466 0.91263 1.04308 1.23179 0.90062 1.02307 1.04406 0.94405 0.90732 0.92206 0.92376 0.75128 0.93087 0.92948 0.85165 0.90358 0.86984 0.86954 0.90309 0.88887 0.86491 0.86446 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.12 71.98 0.66 -4.14 16 2 C -0.01 -0.40 2.30 -12.28 -0.03 -0.43 16 3 H 0.07 3.05 5.29 -2.39 -0.01 3.04 16 4 C -0.51 -30.69 8.36 25.60 0.21 -30.48 16 5 H 0.02 1.47 7.61 -2.91 -0.02 1.45 16 6 C 0.01 0.32 5.47 84.66 0.46 0.79 16 7 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 8 Si 0.95 42.60 26.99 68.60 1.85 44.45 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.22 -8.41 6.82 99.48 0.68 -7.73 16 12 C 0.52 23.40 7.15 87.66 0.63 24.02 16 13 O -0.59 -32.81 15.77 -3.04 -0.05 -32.86 16 14 N -0.72 -23.54 4.85 -463.07 -2.25 -25.78 16 15 C 0.16 4.58 4.84 86.38 0.42 5.00 16 16 C -0.12 -2.43 2.51 -52.18 -0.13 -2.56 16 17 C -0.10 -1.77 5.85 -10.79 -0.06 -1.83 16 18 C -0.18 -3.39 9.92 30.62 0.30 -3.09 16 19 C -0.18 -3.35 9.92 30.62 0.30 -3.04 16 20 C -0.17 -2.73 9.47 30.59 0.29 -2.44 16 21 C -0.16 -2.64 9.47 30.59 0.29 -2.35 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 2.07 7.43 -2.38 -0.02 2.05 16 24 H 0.06 2.20 8.14 -2.38 -0.02 2.19 16 25 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.41 10.49 4.94 -92.70 -0.46 10.03 16 27 H 0.05 1.67 6.91 -2.38 -0.02 1.66 16 28 H 0.05 1.70 6.90 -2.39 -0.02 1.69 16 29 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.76 6.76 -2.39 -0.02 1.75 16 31 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.08 1.76 6.75 -2.39 -0.02 1.74 16 34 H 0.09 1.66 7.02 -2.39 -0.02 1.65 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.64 7.00 -2.39 -0.02 1.62 16 Total: -1.00 -77.20 298.88 3.77 -73.42 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.58 Total: 22.53 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.34 Total: -20.53 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.95 Total: -87.02 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.86 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.85 Total: 44.45 kcal Total: -77.20 3.77 -73.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597430213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.596 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds