Wall clock time and date at job start Mon Mar 30 2020 03:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47551 * 2 1 4 4 C 1.50701 * 109.46950 * 240.00118 * 2 1 3 5 5 H 1.08003 * 119.99448 * 240.00209 * 4 2 1 6 6 C 1.37872 * 120.00103 * 60.00034 * 4 2 1 7 7 N 1.31510 * 119.99842 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00059 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47302 * 59.99743 * 8 6 4 10 10 H 1.48494 * 109.47337 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46959 * 299.99908 * 8 6 4 12 12 C 1.50710 * 109.47227 * 120.00219 * 2 1 3 13 13 O 1.21284 * 119.99790 * 89.63278 * 12 2 1 14 14 N 1.34772 * 119.99867 * 269.64106 * 12 2 1 15 15 C 1.47023 * 125.64824 * 185.05215 * 14 12 2 16 16 C 1.54319 * 107.27204 * 178.89720 * 15 14 12 17 17 C 1.55157 * 102.94452 * 337.80972 * 16 15 14 18 18 H 1.08994 * 111.00442 * 277.42737 * 17 16 15 19 19 C 1.53005 * 111.00406 * 153.60916 * 17 16 15 20 20 C 1.53004 * 117.49688 * 130.07474 * 19 17 16 21 21 C 1.52995 * 117.49613 * 61.45518 * 19 17 16 22 22 C 1.47426 * 125.65062 * 4.73770 * 14 12 2 23 23 H 1.08993 * 109.46983 * 57.01505 * 1 2 3 24 24 H 1.08997 * 109.47144 * 177.01989 * 1 2 3 25 25 H 1.09002 * 109.46931 * 297.02096 * 1 2 3 26 26 H 0.97003 * 120.00013 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.88400 * 298.32121 * 15 14 12 28 28 H 1.09003 * 109.87982 * 59.48474 * 15 14 12 29 29 H 1.09001 * 110.71676 * 96.17325 * 16 15 14 30 30 H 1.09004 * 110.72424 * 219.26365 * 16 15 14 31 31 H 1.09001 * 115.55083 * 275.78241 * 19 17 16 32 32 H 1.08996 * 117.49746 * 0.02562 * 20 19 17 33 33 H 1.09003 * 117.49690 * 145.01894 * 20 19 17 34 34 H 1.09004 * 117.49996 * 214.97386 * 21 19 17 35 35 H 1.08999 * 117.50452 * 359.97438 * 21 19 17 36 36 H 1.08998 * 110.36760 * 323.01295 * 22 14 12 37 37 H 1.09000 * 110.36129 * 85.33255 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 6 2.0324 -0.7105 1.2305 13 8 2.2282 -1.9071 1.2023 14 7 2.2639 -0.0162 2.3622 15 6 2.8503 -0.5596 3.5960 16 6 2.9490 0.6023 4.6068 17 6 2.9369 1.8579 3.6953 18 1 3.9316 2.0633 3.3000 19 6 2.3854 3.0734 4.4434 20 6 3.2036 4.3652 4.3925 21 6 3.1476 3.5454 5.6831 22 6 1.9771 1.4155 2.5658 23 1 -0.3633 0.5594 -0.8620 24 1 -0.3633 -1.0262 -0.0534 25 1 -0.3633 0.4669 0.9155 26 1 0.7087 1.1613 -3.4843 27 1 2.2099 -1.3456 3.9960 28 1 3.8442 -0.9572 3.3902 29 1 2.0896 0.6042 5.2773 30 1 3.8782 0.5428 5.1735 31 1 1.2993 3.1652 4.4550 32 1 4.1346 4.3493 3.8258 33 1 2.6559 5.3073 4.3705 34 1 2.5631 3.9483 6.5102 35 1 4.0417 2.9899 5.9661 36 1 2.1799 1.9765 1.6535 37 1 0.9412 1.5545 2.8752 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597469656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:16 Heat of formation + Delta-G solvation = -21.700357 kcal Electronic energy + Delta-G solvation = -17121.919228 eV Core-core repulsion = 14478.494362 eV Total energy + Delta-G solvation = -2643.424867 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58314 -37.83982 -35.81568 -33.70167 -31.18542 -30.02985 -28.74133 -25.15222 -23.96857 -22.69967 -22.34189 -21.15489 -19.89761 -18.38483 -16.56280 -15.94048 -15.77914 -15.60813 -14.64409 -14.12159 -13.89251 -13.42715 -13.15373 -12.60852 -12.55089 -12.36947 -11.87772 -11.64949 -11.43225 -11.36606 -11.11236 -10.95353 -10.71424 -10.66967 -10.56636 -10.30256 -10.21774 -9.99884 -9.87294 -8.97559 -8.57342 -8.29574 -7.97464 -6.01797 -4.05157 3.36983 3.39353 3.44350 3.66139 3.71984 3.76436 4.45635 4.51618 4.68402 4.73887 4.92864 5.10718 5.19593 5.31384 5.39139 5.51514 5.57468 5.62848 5.79898 5.84127 5.92628 6.00577 6.05712 6.09721 6.20427 6.22684 6.39934 6.70591 6.89608 6.99579 7.04287 7.51059 7.79044 8.01554 8.18035 8.44562 8.99357 9.26574 9.59357 11.05756 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.005949 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.579738 B = 4705.231074 C = 5114.362133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H 0.046 0.954 4 C -0.501 4.501 5 H 0.067 0.933 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.537 3.463 13 O -0.549 6.549 14 N -0.633 5.633 15 C 0.105 3.895 16 C -0.121 4.121 17 C -0.073 4.073 18 H 0.084 0.916 19 C -0.139 4.139 20 C -0.179 4.179 21 C -0.179 4.179 22 C 0.113 3.887 23 H 0.092 0.908 24 H 0.034 0.966 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 7.124 14.588 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 H 0.063 0.937 4 C -0.539 4.539 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.329 3.671 13 O -0.425 6.425 14 N -0.370 5.370 15 C -0.018 4.018 16 C -0.159 4.159 17 C -0.092 4.092 18 H 0.102 0.898 19 C -0.157 4.157 20 C -0.216 4.216 21 C -0.216 4.216 22 C -0.010 4.010 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.569 6.509 14.327 15.944 hybrid contribution 0.294 -0.343 -0.739 0.866 sum 2.863 6.166 13.588 15.193 Atomic orbital electron populations 1.21665 0.96171 1.00496 1.00191 1.18857 0.94279 0.96527 0.88848 0.93650 1.21013 1.31308 1.12437 0.89151 0.91516 1.24923 0.95072 0.95046 0.99016 1.69867 1.36910 1.23011 1.23650 0.86508 0.79184 0.79840 0.81631 1.20111 1.21289 1.20240 1.21827 0.75036 0.87295 0.82943 1.90534 1.52482 1.15646 1.83814 1.48823 1.64787 1.10362 1.12989 1.21788 0.98444 0.96168 0.85449 1.22634 1.02419 0.93717 0.97147 1.21923 0.99487 0.92820 0.94997 0.89803 1.22172 0.98392 0.94536 1.00627 1.23019 1.02344 0.95261 1.00996 1.22909 1.02840 1.04180 0.91708 1.22193 0.97967 0.82283 0.98596 0.88942 0.94694 0.97089 0.92869 0.92250 0.92281 0.90716 0.90667 0.87473 0.88712 0.88871 0.89016 0.88893 0.89868 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.91 37.16 0.33 -2.79 16 2 C 0.04 0.93 2.19 -92.92 -0.20 0.73 16 3 H 0.05 1.18 6.55 -51.93 -0.34 0.84 16 4 C -0.50 -14.54 8.32 -34.44 -0.29 -14.82 16 5 H 0.07 2.03 7.15 -52.48 -0.38 1.66 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.37 11.35 55.43 0.63 -24.74 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.54 13.12 6.89 -10.98 -0.08 13.04 16 13 O -0.55 -15.20 16.30 5.55 0.09 -15.11 16 14 N -0.63 -12.19 3.33 -170.66 -0.57 -12.76 16 15 C 0.10 1.66 6.87 -3.07 -0.02 1.63 16 16 C -0.12 -1.39 6.18 -24.90 -0.15 -1.55 16 17 C -0.07 -0.88 3.19 -88.59 -0.28 -1.16 16 18 H 0.08 1.03 7.97 -51.93 -0.41 0.62 16 19 C -0.14 -1.38 5.25 -90.62 -0.48 -1.86 16 20 C -0.18 -1.63 10.19 -26.73 -0.27 -1.90 16 21 C -0.18 -1.52 9.99 -26.73 -0.27 -1.78 16 22 C 0.11 1.75 6.20 -2.65 -0.02 1.74 16 23 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.05 7.94 -51.93 -0.41 0.64 16 32 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.39 6.68 -51.93 -0.35 1.04 16 37 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -31.66 301.21 -8.12 -39.78 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.97 Total: -1.59 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.82 Total: -7.12 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.06 Total: -37.50 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.66 -8.12 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597469656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.077 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds