Wall clock time and date at job start Mon Mar 30 2020 03:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47551 * 2 1 4 4 C 1.50701 * 109.46950 * 240.00118 * 2 1 3 5 5 H 1.08003 * 119.99448 * 240.00209 * 4 2 1 6 6 C 1.37872 * 120.00103 * 60.00034 * 4 2 1 7 7 N 1.31510 * 119.99842 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00059 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47302 * 59.99743 * 8 6 4 10 10 H 1.48494 * 109.47337 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46959 * 299.99908 * 8 6 4 12 12 C 1.50710 * 109.47227 * 120.00219 * 2 1 3 13 13 O 1.21284 * 119.99790 * 89.63278 * 12 2 1 14 14 N 1.34772 * 119.99867 * 269.64106 * 12 2 1 15 15 C 1.47023 * 125.64824 * 185.05215 * 14 12 2 16 16 C 1.54319 * 107.27204 * 178.89720 * 15 14 12 17 17 C 1.55157 * 102.94452 * 337.80972 * 16 15 14 18 18 H 1.08994 * 111.00442 * 277.42737 * 17 16 15 19 19 C 1.53005 * 111.00406 * 153.60916 * 17 16 15 20 20 C 1.53004 * 117.49688 * 130.07474 * 19 17 16 21 21 C 1.52995 * 117.49613 * 61.45518 * 19 17 16 22 22 C 1.47426 * 125.65062 * 4.73770 * 14 12 2 23 23 H 1.08993 * 109.46983 * 57.01505 * 1 2 3 24 24 H 1.08997 * 109.47144 * 177.01989 * 1 2 3 25 25 H 1.09002 * 109.46931 * 297.02096 * 1 2 3 26 26 H 0.97003 * 120.00013 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.88400 * 298.32121 * 15 14 12 28 28 H 1.09003 * 109.87982 * 59.48474 * 15 14 12 29 29 H 1.09001 * 110.71676 * 96.17325 * 16 15 14 30 30 H 1.09004 * 110.72424 * 219.26365 * 16 15 14 31 31 H 1.09001 * 115.55083 * 275.78241 * 19 17 16 32 32 H 1.08996 * 117.49746 * 0.02562 * 20 19 17 33 33 H 1.09003 * 117.49690 * 145.01894 * 20 19 17 34 34 H 1.09004 * 117.49996 * 214.97386 * 21 19 17 35 35 H 1.08999 * 117.50452 * 359.97438 * 21 19 17 36 36 H 1.08998 * 110.36760 * 323.01295 * 22 14 12 37 37 H 1.09000 * 110.36129 * 85.33255 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 6 2.0324 -0.7105 1.2305 13 8 2.2282 -1.9071 1.2023 14 7 2.2639 -0.0162 2.3622 15 6 2.8503 -0.5596 3.5960 16 6 2.9490 0.6023 4.6068 17 6 2.9369 1.8579 3.6953 18 1 3.9316 2.0633 3.3000 19 6 2.3854 3.0734 4.4434 20 6 3.2036 4.3652 4.3925 21 6 3.1476 3.5454 5.6831 22 6 1.9771 1.4155 2.5658 23 1 -0.3633 0.5594 -0.8620 24 1 -0.3633 -1.0262 -0.0534 25 1 -0.3633 0.4669 0.9155 26 1 0.7087 1.1613 -3.4843 27 1 2.2099 -1.3456 3.9960 28 1 3.8442 -0.9572 3.3902 29 1 2.0896 0.6042 5.2773 30 1 3.8782 0.5428 5.1735 31 1 1.2993 3.1652 4.4550 32 1 4.1346 4.3493 3.8258 33 1 2.6559 5.3073 4.3705 34 1 2.5631 3.9483 6.5102 35 1 4.0417 2.9899 5.9661 36 1 2.1799 1.9765 1.6535 37 1 0.9412 1.5545 2.8752 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597469656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:16 Heat of formation + Delta-G solvation = -40.266197 kcal Electronic energy + Delta-G solvation = -17122.724304 eV Core-core repulsion = 14478.494362 eV Total energy + Delta-G solvation = -2644.229942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06626 -39.17279 -37.01046 -35.81350 -32.95574 -31.66057 -29.98584 -27.30675 -25.55121 -23.85395 -23.26249 -22.48003 -20.85309 -20.04211 -18.46080 -17.81877 -17.19854 -16.77940 -16.32633 -15.72046 -15.24394 -14.74904 -14.60754 -14.21872 -14.07433 -13.82390 -13.34975 -13.08083 -12.95256 -12.66730 -12.63805 -12.53878 -12.30017 -12.21759 -12.09990 -12.03818 -11.57860 -11.10747 -11.08862 -10.67614 -10.63101 -10.33296 -9.56741 -8.18174 -6.29656 1.39540 1.41875 1.50042 1.85140 2.16961 2.44688 2.92616 3.10915 3.57066 3.64115 3.82289 4.13466 4.22284 4.27063 4.30297 4.35363 4.55996 4.63486 4.66862 4.73960 4.89096 4.89929 4.91862 4.95268 5.00805 5.07772 5.15894 5.25572 5.37564 5.38947 5.47549 5.53624 5.68221 5.88340 6.15438 6.61745 6.75849 7.34124 7.44262 8.87905 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.005949 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.579738 B = 4705.231074 C = 5114.362133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.033 3.967 3 H 0.040 0.960 4 C -0.533 4.533 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.273 1.273 12 C 0.532 3.468 13 O -0.594 6.594 14 N -0.630 5.630 15 C 0.095 3.905 16 C -0.104 4.104 17 C -0.061 4.061 18 H 0.080 0.920 19 C -0.149 4.149 20 C -0.185 4.185 21 C -0.163 4.163 22 C 0.104 3.896 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.041 0.959 26 H 0.267 0.733 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 8.407 16.093 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.012 3.988 3 H 0.058 0.942 4 C -0.571 4.571 5 H 0.059 0.941 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.198 1.198 12 C 0.324 3.676 13 O -0.475 6.475 14 N -0.364 5.364 15 C -0.027 4.027 16 C -0.142 4.142 17 C -0.080 4.080 18 H 0.098 0.902 19 C -0.167 4.167 20 C -0.222 4.222 21 C -0.200 4.200 22 C -0.018 4.018 23 H 0.094 0.906 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.816 7.849 15.874 17.931 hybrid contribution 0.220 -0.685 -1.166 1.370 sum 3.036 7.164 14.708 16.640 Atomic orbital electron populations 1.21479 0.95362 0.99409 1.00953 1.18771 0.94983 0.95903 0.89119 0.94179 1.21144 1.32266 1.12446 0.91230 0.94078 1.25599 0.95023 0.95696 1.01384 1.69936 1.36795 1.23417 1.24584 0.85616 0.78789 0.78636 0.78645 1.20363 1.19541 1.19841 1.21446 0.75318 0.86747 0.84121 1.90494 1.54797 1.17297 1.84870 1.48740 1.63063 1.11925 1.12644 1.22081 0.97615 0.98103 0.84889 1.22625 1.04683 0.90878 0.96003 1.21820 0.98289 0.94057 0.93830 0.90162 1.22073 0.98731 0.93930 1.01981 1.23098 1.02092 0.95273 1.01698 1.22997 1.02616 1.03000 0.91385 1.22468 0.99930 0.79854 0.99539 0.90556 0.96275 0.94049 0.92361 0.92504 0.93006 0.88933 0.87937 0.87064 0.89081 0.88103 0.87590 0.88216 0.91479 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 8.91 71.98 0.64 -5.03 16 2 C 0.03 1.77 2.19 -12.28 -0.03 1.75 16 3 H 0.04 2.15 6.55 -2.39 -0.02 2.13 16 4 C -0.53 -31.90 8.32 25.60 0.21 -31.69 16 5 H 0.04 2.62 7.15 -2.91 -0.02 2.60 16 6 C 0.02 1.29 5.30 84.65 0.45 1.74 16 7 N -0.91 -51.68 11.35 21.44 0.24 -51.44 16 8 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 12 C 0.53 26.70 6.89 87.66 0.60 27.30 16 13 O -0.59 -34.17 16.30 -3.04 -0.05 -34.22 16 14 N -0.63 -24.21 3.33 -812.24 -2.70 -26.92 16 15 C 0.10 2.92 6.87 86.73 0.60 3.52 16 16 C -0.10 -2.07 6.18 31.78 0.20 -1.88 16 17 C -0.06 -1.32 3.19 -9.48 -0.03 -1.35 16 18 H 0.08 1.82 7.97 -2.39 -0.02 1.80 16 19 C -0.15 -2.51 5.25 -10.79 -0.06 -2.57 16 20 C -0.18 -2.86 10.19 30.59 0.31 -2.54 16 21 C -0.16 -2.14 9.99 30.59 0.31 -1.83 16 22 C 0.10 3.13 6.20 86.78 0.54 3.67 16 23 H 0.08 4.04 6.15 -2.39 -0.01 4.02 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.58 8.04 -2.39 -0.02 1.56 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.55 16 31 H 0.11 1.83 7.94 -2.39 -0.02 1.81 16 32 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 2.24 6.68 -2.39 -0.02 2.22 16 37 H 0.08 2.12 7.88 -2.39 -0.02 2.10 16 Total: -1.00 -69.69 301.21 4.29 -65.40 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.03 Total: 8.63 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 3.74 Total: -8.92 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.46 Total: -78.36 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.22 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.69 4.29 -65.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597469656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.137 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds