Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47230 * 2 1 4 4 C 1.50698 * 109.46991 * 239.99446 * 2 1 3 5 5 H 1.08001 * 119.99997 * 239.99958 * 4 2 1 6 6 C 1.37878 * 119.99640 * 60.00888 * 4 2 1 7 7 N 1.31513 * 120.00289 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99675 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47208 * 119.99851 * 8 6 4 11 11 H 1.48507 * 109.46741 * 239.99559 * 8 6 4 12 12 C 1.50707 * 109.46664 * 119.99968 * 2 1 3 13 13 O 1.21275 * 119.99906 * 85.34869 * 12 2 1 14 14 N 1.34773 * 119.99571 * 265.61328 * 12 2 1 15 15 C 1.46853 * 120.67843 * 5.18738 * 14 12 2 16 16 C 1.53110 * 109.22644 * 123.38436 * 15 14 12 17 17 C 1.53189 * 109.43937 * 57.74445 * 16 15 14 18 18 C 1.53146 * 108.99476 * 302.03670 * 17 16 15 19 19 C 1.52773 * 117.80471 * 269.59776 * 18 17 16 20 20 C 1.52750 * 117.83966 * 200.59492 * 18 17 16 21 21 C 1.47156 * 120.66873 * 184.90023 * 14 12 2 22 22 H 1.09004 * 109.47050 * 304.93722 * 1 2 3 23 23 H 1.09003 * 109.46918 * 64.93376 * 1 2 3 24 24 H 1.08996 * 109.47478 * 184.93530 * 1 2 3 25 25 H 0.97002 * 120.00113 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.51784 * 243.31299 * 15 14 12 27 27 H 1.09007 * 109.51324 * 3.41393 * 15 14 12 28 28 H 1.09003 * 109.47337 * 177.73498 * 16 15 14 29 29 H 1.08999 * 109.47797 * 297.75001 * 16 15 14 30 30 H 1.09001 * 109.55643 * 61.88788 * 17 16 15 31 31 H 1.09000 * 109.55241 * 182.09011 * 17 16 15 32 32 H 1.09001 * 117.50868 * 359.65447 * 19 18 17 33 33 H 1.09004 * 117.50684 * 144.72039 * 19 18 17 34 34 H 1.08997 * 117.50653 * 215.23107 * 20 18 17 35 35 H 1.08999 * 117.50619 * 0.25792 * 20 18 17 36 36 H 1.09000 * 109.74640 * 350.01332 * 21 14 12 37 37 H 1.09000 * 109.74358 * 110.73616 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1482 -2.2859 -3.6036 10 1 1.1678 -1.5867 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 6 2.0322 -0.7105 1.2306 13 8 2.1540 -1.9171 1.2268 14 7 2.3409 -0.0053 2.3368 15 6 2.0875 1.4398 2.3992 16 6 1.1912 1.7430 3.6030 17 6 1.8664 1.2371 4.8816 18 6 2.1292 -0.2655 4.7455 19 6 1.0430 -1.2255 5.2277 20 6 2.3400 -1.0717 6.0256 21 6 2.9330 -0.6691 3.5091 22 1 -0.3633 0.5885 0.8425 23 1 -0.3633 0.4354 -0.9309 24 1 -0.3634 -1.0238 0.0884 25 1 0.7084 1.1609 -3.4844 26 1 3.0332 1.9711 2.5065 27 1 1.5907 1.7622 1.4841 28 1 1.0334 2.8191 3.6766 29 1 0.2312 1.2427 3.4764 30 1 2.8112 1.7608 5.0271 31 1 1.2134 1.4187 5.7353 32 1 0.1375 -0.7899 5.6501 33 1 0.9034 -2.1501 4.6675 34 1 3.0534 -1.8950 5.9904 35 1 2.2880 -0.5349 6.9729 36 1 2.8904 -1.7507 3.3805 37 1 3.9692 -0.3522 3.6274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597525769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = -21.742932 kcal Electronic energy + Delta-G solvation = -17587.832570 eV Core-core repulsion = 14944.405857 eV Total energy + Delta-G solvation = -2643.426713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.78411 -37.79573 -34.93841 -33.73468 -31.81535 -30.51278 -27.75044 -25.36323 -25.15195 -22.59268 -22.08293 -21.89145 -19.02847 -17.99651 -16.49514 -16.01823 -15.46900 -15.06835 -14.60032 -14.29025 -13.94859 -13.57858 -12.95937 -12.86129 -12.56550 -12.41967 -12.18474 -11.51108 -11.41774 -11.10243 -11.01306 -10.90490 -10.66555 -10.59236 -10.55652 -10.23271 -10.05584 -10.03328 -9.64834 -8.96670 -8.55892 -8.24505 -7.97870 -6.03351 -4.07014 3.32002 3.39477 3.46649 3.55647 3.76338 3.97441 4.46992 4.65982 4.81727 4.94376 5.06671 5.21308 5.29387 5.37714 5.58665 5.64990 5.70242 5.81301 5.93547 5.95267 5.98756 6.01342 6.12880 6.19003 6.21777 6.41830 6.45091 6.69071 6.91334 7.03659 7.15535 7.46978 7.78773 7.99942 8.15482 8.41307 8.97668 9.26496 9.57676 11.03651 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042632 B = 0.006528 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.625500 B = 4288.234611 C = 4584.201242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.497 4.497 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.526 3.474 13 O -0.552 6.552 14 N -0.623 5.623 15 C 0.108 3.892 16 C -0.132 4.132 17 C -0.078 4.078 18 C -0.137 4.137 19 C -0.168 4.168 20 C -0.172 4.172 21 C 0.148 3.852 22 H 0.012 0.988 23 H 0.095 0.905 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 3.301 14.396 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.536 4.536 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.318 3.682 13 O -0.428 6.428 14 N -0.358 5.358 15 C -0.016 4.016 16 C -0.171 4.171 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.205 4.205 20 C -0.210 4.210 21 C 0.025 3.975 22 H 0.031 0.969 23 H 0.114 0.886 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.927 2.746 14.212 14.505 hybrid contribution 0.261 -0.340 -0.690 0.812 sum 1.187 2.406 13.522 13.786 Atomic orbital electron populations 1.21698 0.96200 0.99275 1.01653 1.18915 0.94317 0.96606 0.89182 0.93474 1.21078 1.31023 1.12318 0.89160 0.91552 1.24928 0.95108 0.95064 0.99041 1.69869 1.36995 1.23073 1.23460 0.86409 0.78676 0.79743 0.82507 1.19627 1.20937 1.21014 1.22009 0.74513 0.87727 0.83923 1.90510 1.53671 1.15226 1.83424 1.48326 1.64418 1.08519 1.14541 1.21659 0.99028 0.81268 0.99618 1.21905 0.99710 1.00741 0.94716 1.21083 1.00415 0.92358 0.97648 1.21741 1.02848 0.93813 0.95379 1.22984 0.92736 1.01400 1.03408 1.22933 1.00502 1.02722 0.94837 1.20898 0.94734 0.98960 0.82948 0.96907 0.88640 0.94976 0.92953 0.92284 0.88263 0.90984 0.91429 0.91579 0.92072 0.89114 0.88712 0.88839 0.88942 0.89431 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.96 37.16 0.33 -2.83 16 2 C 0.03 0.78 1.85 -92.92 -0.17 0.61 16 3 H 0.05 1.20 6.14 -51.93 -0.32 0.88 16 4 C -0.50 -14.27 8.32 -34.44 -0.29 -14.56 16 5 H 0.07 2.01 7.25 -52.49 -0.38 1.63 16 6 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 7 N -0.89 -25.11 11.29 55.43 0.63 -24.48 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.53 12.56 6.68 -10.98 -0.07 12.48 16 13 O -0.55 -14.89 15.55 5.56 0.09 -14.80 16 14 N -0.62 -11.79 2.98 -172.87 -0.52 -12.31 16 15 C 0.11 1.69 6.12 -3.79 -0.02 1.67 16 16 C -0.13 -1.69 6.08 -26.58 -0.16 -1.85 16 17 C -0.08 -0.90 5.64 -26.56 -0.15 -1.05 16 18 C -0.14 -1.80 2.10 -154.73 -0.32 -2.13 16 19 C -0.17 -2.16 9.91 -26.82 -0.27 -2.42 16 20 C -0.17 -1.90 9.99 -26.83 -0.27 -2.17 16 21 C 0.15 2.41 6.17 -3.74 -0.02 2.38 16 22 H 0.01 0.26 8.04 -51.93 -0.42 -0.16 16 23 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.71 5.37 -51.92 -0.28 1.43 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.59 6.95 -51.93 -0.36 1.23 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -30.91 295.31 -7.73 -38.64 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.85 Total: -0.01 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.51 Total: -8.31 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.11 Total: -36.79 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.09 Total: -14.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.91 -7.73 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597525769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.901 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds