Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47230 * 2 1 4 4 C 1.50698 * 109.46991 * 239.99446 * 2 1 3 5 5 H 1.08001 * 119.99997 * 239.99958 * 4 2 1 6 6 C 1.37878 * 119.99640 * 60.00888 * 4 2 1 7 7 N 1.31513 * 120.00289 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99675 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47212 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47208 * 119.99851 * 8 6 4 11 11 H 1.48507 * 109.46741 * 239.99559 * 8 6 4 12 12 C 1.50707 * 109.46664 * 119.99968 * 2 1 3 13 13 O 1.21275 * 119.99906 * 85.34869 * 12 2 1 14 14 N 1.34773 * 119.99571 * 265.61328 * 12 2 1 15 15 C 1.46853 * 120.67843 * 5.18738 * 14 12 2 16 16 C 1.53110 * 109.22644 * 123.38436 * 15 14 12 17 17 C 1.53189 * 109.43937 * 57.74445 * 16 15 14 18 18 C 1.53146 * 108.99476 * 302.03670 * 17 16 15 19 19 C 1.52773 * 117.80471 * 269.59776 * 18 17 16 20 20 C 1.52750 * 117.83966 * 200.59492 * 18 17 16 21 21 C 1.47156 * 120.66873 * 184.90023 * 14 12 2 22 22 H 1.09004 * 109.47050 * 304.93722 * 1 2 3 23 23 H 1.09003 * 109.46918 * 64.93376 * 1 2 3 24 24 H 1.08996 * 109.47478 * 184.93530 * 1 2 3 25 25 H 0.97002 * 120.00113 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.51784 * 243.31299 * 15 14 12 27 27 H 1.09007 * 109.51324 * 3.41393 * 15 14 12 28 28 H 1.09003 * 109.47337 * 177.73498 * 16 15 14 29 29 H 1.08999 * 109.47797 * 297.75001 * 16 15 14 30 30 H 1.09001 * 109.55643 * 61.88788 * 17 16 15 31 31 H 1.09000 * 109.55241 * 182.09011 * 17 16 15 32 32 H 1.09001 * 117.50868 * 359.65447 * 19 18 17 33 33 H 1.09004 * 117.50684 * 144.72039 * 19 18 17 34 34 H 1.08997 * 117.50653 * 215.23107 * 20 18 17 35 35 H 1.08999 * 117.50619 * 0.25792 * 20 18 17 36 36 H 1.09000 * 109.74640 * 350.01332 * 21 14 12 37 37 H 1.09000 * 109.74358 * 110.73616 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1482 -2.2859 -3.6036 10 1 1.1678 -1.5867 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 6 2.0322 -0.7105 1.2306 13 8 2.1540 -1.9171 1.2268 14 7 2.3409 -0.0053 2.3368 15 6 2.0875 1.4398 2.3992 16 6 1.1912 1.7430 3.6030 17 6 1.8664 1.2371 4.8816 18 6 2.1292 -0.2655 4.7455 19 6 1.0430 -1.2255 5.2277 20 6 2.3400 -1.0717 6.0256 21 6 2.9330 -0.6691 3.5091 22 1 -0.3633 0.5885 0.8425 23 1 -0.3633 0.4354 -0.9309 24 1 -0.3634 -1.0238 0.0884 25 1 0.7084 1.1609 -3.4844 26 1 3.0332 1.9711 2.5065 27 1 1.5907 1.7622 1.4841 28 1 1.0334 2.8191 3.6766 29 1 0.2312 1.2427 3.4764 30 1 2.8112 1.7608 5.0271 31 1 1.2134 1.4187 5.7353 32 1 0.1375 -0.7899 5.6501 33 1 0.9034 -2.1501 4.6675 34 1 3.0534 -1.8950 5.9904 35 1 2.2880 -0.5349 6.9729 36 1 2.8904 -1.7507 3.3805 37 1 3.9692 -0.3522 3.6274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597525769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = -39.793847 kcal Electronic energy + Delta-G solvation = -17588.615316 eV Core-core repulsion = 14944.405857 eV Total energy + Delta-G solvation = -2644.209459 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23955 -39.24816 -36.33811 -35.78302 -33.06044 -32.53604 -29.02134 -27.31448 -26.71524 -23.96259 -23.57635 -22.97228 -20.46276 -19.35351 -18.47899 -17.82349 -17.01770 -16.50555 -16.03253 -15.87558 -15.26122 -14.96766 -14.69175 -14.29580 -14.04680 -13.78366 -13.51313 -13.27760 -12.98170 -12.65663 -12.60844 -12.46820 -12.38529 -12.14811 -12.08022 -11.94393 -11.72498 -11.08203 -11.04071 -10.72393 -10.57956 -10.17528 -9.49336 -8.17830 -6.29292 1.38159 1.40098 1.52987 1.88942 2.14935 2.44608 2.90303 3.10875 3.62142 3.80411 3.96193 4.01175 4.13128 4.14564 4.32583 4.54198 4.65298 4.69699 4.72492 4.75586 4.79628 4.91751 4.95143 5.00352 5.01551 5.03716 5.15411 5.25301 5.33320 5.40996 5.43010 5.64061 5.74209 5.91081 6.17310 6.59576 6.75745 7.35169 7.48056 8.87917 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042632 B = 0.006528 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.625500 B = 4288.234611 C = 4584.201242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.029 3.971 3 H 0.047 0.953 4 C -0.529 4.529 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.269 1.269 12 C 0.522 3.478 13 O -0.597 6.597 14 N -0.615 5.615 15 C 0.099 3.901 16 C -0.126 4.126 17 C -0.071 4.071 18 C -0.148 4.148 19 C -0.183 4.183 20 C -0.145 4.145 21 C 0.143 3.857 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.014 0.986 25 H 0.267 0.733 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 4.946 16.065 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.008 3.992 3 H 0.065 0.935 4 C -0.567 4.567 5 H 0.056 0.944 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.194 1.194 12 C 0.313 3.687 13 O -0.478 6.478 14 N -0.348 5.348 15 C -0.023 4.023 16 C -0.164 4.164 17 C -0.108 4.108 18 C -0.149 4.149 19 C -0.220 4.220 20 C -0.182 4.182 21 C 0.021 3.979 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.171 4.446 15.919 16.569 hybrid contribution 0.204 -0.824 -1.181 1.454 sum 1.375 3.621 14.738 15.239 Atomic orbital electron populations 1.21510 0.95626 0.98479 1.01874 1.18832 0.94823 0.96254 0.89289 0.93494 1.21188 1.31960 1.12263 0.91310 0.94353 1.25578 0.95076 0.95716 1.01322 1.69931 1.36847 1.23432 1.24441 0.85527 0.78405 0.78572 0.79285 1.20630 1.19935 1.19419 1.21684 0.74863 0.87173 0.84971 1.90476 1.56016 1.16911 1.84394 1.48296 1.62747 1.09889 1.13867 1.21934 1.00817 0.79087 1.00503 1.21878 0.98111 1.02565 0.93844 1.21107 1.01626 0.90587 0.97515 1.21724 1.02901 0.95379 0.94908 1.22991 0.94202 1.00476 1.04293 1.23028 0.98583 1.01869 0.94730 1.21061 0.96223 0.97284 0.83353 0.93952 0.90439 0.96639 0.92366 0.90050 0.90192 0.87917 0.93035 0.89884 0.89687 0.87655 0.91414 0.88747 0.86063 0.92233 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.96 71.98 0.64 -5.15 16 2 C 0.03 1.52 1.85 -12.28 -0.02 1.50 16 3 H 0.05 2.43 6.14 -2.39 -0.01 2.42 16 4 C -0.53 -31.42 8.32 25.60 0.21 -31.20 16 5 H 0.04 2.44 7.25 -2.91 -0.02 2.42 16 6 C 0.02 1.28 5.29 84.66 0.45 1.73 16 7 N -0.91 -51.08 11.29 21.45 0.24 -50.84 16 8 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.52 25.75 6.68 87.66 0.59 26.34 16 13 O -0.60 -33.93 15.55 -3.02 -0.05 -33.98 16 14 N -0.62 -23.29 2.98 -819.24 -2.44 -25.73 16 15 C 0.10 2.94 6.12 86.35 0.53 3.47 16 16 C -0.13 -2.83 6.08 30.69 0.19 -2.64 16 17 C -0.07 -1.35 5.64 30.71 0.17 -1.17 16 18 C -0.15 -3.57 2.10 -52.33 -0.11 -3.68 16 19 C -0.18 -4.43 9.91 30.54 0.30 -4.12 16 20 C -0.14 -2.75 9.99 30.53 0.31 -2.45 16 21 C 0.14 4.59 6.17 86.22 0.53 5.12 16 22 H 0.04 1.78 8.04 -2.38 -0.02 1.76 16 23 H 0.08 4.12 5.95 -2.39 -0.01 4.11 16 24 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.70 5.37 -2.38 -0.01 2.69 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.28 8.11 -2.39 -0.02 1.27 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 2.24 6.95 -2.39 -0.02 2.23 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.02 295.31 4.60 -64.42 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.04 Total: 11.15 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.79 Total: -12.26 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -2.20 Total: -76.57 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.05 Total: -33.98 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.02 4.60 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597525769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.622 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds